TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.2
(710 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stres... 247 2e-065
gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorgh... 122 3e-052
gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorgh... 117 3e-050
gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-tr... 177 2e-043
gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) So... 162 6e-039
gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adap... 116 7e-037
gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infecte... 149 6e-035
gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methy... 148 1e-034
gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkal... 145 5e-034
gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorg... 136 4e-031
gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorg... 136 4e-031
gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves... 135 8e-031
gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum met... 129 5e-029
gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation... 129 5e-029
gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stresse... 125 6e-028
gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorg... 124 2e-027
gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorgh... 122 6e-027
gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorgh... 122 6e-027
gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Me... 122 8e-027
gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infecte... 122 8e-027
gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorg... 121 1e-026
gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) So... 121 1e-026
gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-tr... 118 1e-025
gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-tr... 117 2e-025
gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient se... 117 2e-025
gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorgh... 116 3e-025
gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infecte... 116 3e-025
gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infecte... 112 5e-025
gb|CW265210.1|CW265210 104_734_11231740_116_35260_010 Sorgh... 69 7e-025
gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient se... 114 1e-024
gb|CL150354.1|CL150354 104_332_10778471_114_31357_023 Sorgh... 104 5e-024
gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorg... 110 3e-023
gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sor... 108 8e-023
gb|CD219670.1|CD219670 CCC1_58_A07.b1_A007 Callus culture/c... 67 8e-023
gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated... 105 5e-022
gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum m... 103 4e-021
gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorgh... 103 4e-021
>gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H05_A002 3', mRNA sequence
Length = 732
Score = 247 bits (533), Expect(2) = 2e-065
Identities = 104/167 (62%), Positives = 125/167 (74%)
Frame = +3 / +2
Query: 66 NQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAI 245
++S+LVY SW+ I +L VMKTVSVGRR FSA+FQL FRLIK LIF+ FTAI+++LI
Sbjct: 125 DKSILVYLMSWLAIVAVLFVMKTVSVGRRTFSADFQLFFRLIKFLIFVAFTAILIVLIVF 304
Query: 246 PGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTP 425
MT DIFVC LAF+PTGWG+ +P+ GLWGS++ALAR YEI+MG+LLFTP
Sbjct: 305 LHMTFRDIFVCFLAFLPTGWGILLIAQPCKPLARHVGLWGSVRALARAYEIIMGVLLFTP 484
Query: 426 IAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE* 566
I LA FVSEFQTRMLFNQAFS GLQISRI G KK+ +K+*
Sbjct: 485 ITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKKERSARSKD* 625
Score = 136 bits (291), Expect = 4e-031
Identities = 70/164 (42%), Positives = 84/164 (51%)
Frame = -2 / -1
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SF P IREIC PLLNA LNSI VWNSDT A +GV
Sbjct: 621 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 442
Query: 382 XXALIEPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVIN 203
A +P +P G I PHPVG AR TN+S V+ I+ +AV N
Sbjct: 441 ARARTDPHNPTCRARGLQGCAISSIPHPVGKNARKHTNISRKVI*RNTIKTIKIAVKATN 262
Query: 202 IRPLINRNTSWNSALNLLLPTDTVFITSKITKITTHEKQ*TSTL 71
I+ LI R SW SALN+ LPTDTVFIT++ I + + + T L
Sbjct: 261 IKNLIRRKNSWKSALNVRLPTDTVFITNRTATIASQDIKYTKML 130
Score = 24.0 bits (46), Expect(2) = 2e-065
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3 / +2
Query: 15 RYGLVYHLNI 44
+YGLVYHL+I
Sbjct: 89 QYGLVYHLHI 118
>gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892573, DNA
sequence
Length = 745
Score = 122 bits (261), Expect(2) = 3e-052
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +3 / +3
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A +P+ GLWGS++ALAR YEI+MG+LLFTPI LA FVSEFQTRMLFNQAFS GL
Sbjct: 348 ACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGL 527
Query: 507 QISRIXXGHKKDXXTXNKE* 566
QISRI G KK+ +K+*
Sbjct: 528 QISRILGGQKKERSARSKD* 587
Score = 104 bits (222), Expect(2) = 3e-052
Identities = 43/65 (66%), Positives = 52/65 (80%)
Frame = +3 / +2
Query: 117 LLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMP 296
L ++TVSVGRR FSA+FQL FRLIK LIF+ FTAI+++LI MT DIFVC LAF+P
Sbjct: 32 LYSLQTVSVGRRTFSADFQLFFRLIKFLIFVAFTAILIVLIVFLHMTFRDIFVCFLAFLP 211
Query: 297 TGWGL 311
TGWG+
Sbjct: 212 TGWGI 226
Score = 69.8 bits (146), Expect(2) = 1e-023
Identities = 31/59 (52%), Positives = 37/59 (62%)
Frame = -2 / -2
Query: 307 PHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSWNSALNLLLPTDTV 131
PHPVG AR TN+S V+ I+ +AV NI+ LI R SW SALN+ LPTDTV
Sbjct: 222 PHPVGKNARKHTNISRKVI*RNTIKTIKIAVKATNIKNLIRRKNSWKSALNVRLPTDTV 46
Score = 61.1 bits (127), Expect(2) = 1e-023
Identities = 34/82 (41%), Positives = 37/82 (45%)
Frame = -2 / -1
Query: 562 SLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXX 383
SL SF P IREIC PLLNA LNSI VWNSDT A +GV
Sbjct: 583 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 404
Query: 382 XXALIEPQSPVLWITGRIAXXI 317
A +P +P G A I
Sbjct: 403 ARARTDPHNPTCRARGLQACAI 338
>gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174363, DNA
sequence
Length = 703
Score = 117 bits (250), Expect(2) = 3e-050
Identities = 49/72 (68%), Positives = 57/72 (79%)
Frame = +3 / +1
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A +P+ GLWGS++ALAR YEI+MG+LLFTPI LA FVSEFQTRMLFNQAFS GL
Sbjct: 430 ACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGL 609
Query: 507 QISRIXXGHKKD 542
QISRI G K++
Sbjct: 610 QISRILGGQKRN 645
Score = 104 bits (222), Expect(2) = 3e-050
Identities = 43/65 (66%), Positives = 52/65 (80%)
Frame = +3 / +3
Query: 117 LLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMP 296
L ++TVSVGRR FSA+FQL FRLIK LIF+ FTAI+++LI MT DIFVC LAF+P
Sbjct: 114 LYSLQTVSVGRRTFSADFQLFFRLIKFLIFVAFTAILIVLIVFLHMTFRDIFVCFLAFLP 293
Query: 297 TGWGL 311
TGWG+
Sbjct: 294 TGWGI 308
Score = 69.8 bits (146), Expect(2) = 4e-022
Identities = 31/59 (52%), Positives = 37/59 (62%)
Frame = -2 / -1
Query: 307 PHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSWNSALNLLLPTDTV 131
PHPVG AR TN+S V+ I+ +AV NI+ LI R SW SALN+ LPTDTV
Sbjct: 304 PHPVGKNARKHTNISRKVI*RNTIKTIKIAVKATNIKNLIRRKNSWKSALNVRLPTDTV 128
Score = 56.1 bits (116), Expect(2) = 4e-022
Identities = 30/71 (42%), Positives = 33/71 (46%)
Frame = -2 / -3
Query: 529 PXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXXXXXALIEPQSPV 350
P IREIC PLLNA LNSI VWNSDT A +GV A +P +P
Sbjct: 632 PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*ARARARTDPHNPT 453
Query: 349 LWITGRIAXXI 317
G A I
Sbjct: 452 CRARGLQACAI 420
>gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 3', mRNA sequence
Length = 555
Score = 177 bits (381), Expect = 2e-043
Identities = 73/121 (60%), Positives = 89/121 (73%)
Frame = +3 / +3
Query: 204 FITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALA 383
F+ FTAI+++LI MT DI+VC LAF+PTGWG+ A +P+ GLWGS++ALA
Sbjct: 3 FVAFTAILIVLIVFLHMTFRDIYVCFLAFLPTGWGILLIAQACKPLARHVGLWGSVRALA 182
Query: 384 RGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE 563
R YEI+MG+LLFTPI LA FVSEFQTRMLFNQAFS GLQISRI G KK+ +K+
Sbjct: 183 RAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKKERSARSKD 362
Query: 564 * 566
*
Sbjct: 363 * 365
>gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 423
Score = 162 bits (348), Expect = 6e-039
Identities = 70/95 (73%), Positives = 74/95 (77%)
Frame = +3 / +1
Query: 282 LAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSE 461
LAFMP+GWGL +R I GLWGS+KALARGYEI+MGLLLFTPIAFLA FVSE
Sbjct: 1 LAFMPSGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSE 180
Query: 462 FQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE* 566
FQTRMLFNQAFS GLQISRI GHKKD NKE*
Sbjct: 181 FQTRMLFNQAFSRGLQISRILGGHKKDRAARNKE* 285
Score = 119 bits (254), Expect = 5e-026
Identities = 52/94 (55%), Positives = 58/94 (61%)
Frame = -2 / -2
Query: 565 YSLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGVNXXXXXXXXXX 386
+SLF SFLCP IREICRPLL AWLNSILVWNS+TN QAR A+GVN
Sbjct: 284 HSLFRAALSFLCPPRIREICRPLLKAWLNSILVWNSETNGNQARNAIGVNSSKPMMIS*P 105
Query: 385 XXXALIEPQSPVLWITGRIAXXIXXKPHPVGMKA 284
AL +P SP+ I I I KPHP+GM A
Sbjct: 104 RASALTDPHSPICEIADLIVCAIRSKPHPLGMNA 3
>gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx93f03 5', DNA sequence
Length = 633
Score = 116 bits (249), Expect(2) = 7e-037
Identities = 49/71 (69%), Positives = 57/71 (80%)
Frame = +3 / -3
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A +PVI GLWGS+KAL+RGYE LMG+++F P+A LA FVSEFQTR+LFNQAFS GL
Sbjct: 253 ASKPVIKACGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQTRLLFNQAFSRGL 74
Query: 507 QISRIXXGHKK 539
QISRI G KK
Sbjct: 73 QISRILAGGKK 41
Score = 60.2 bits (125), Expect(2) = 7e-037
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = +3 / -1
Query: 159 SAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRP 338
SA+FQL+FRL+K +FI + +L + +TV DIF LAF PTGW + + P
Sbjct: 633 SADFQLMFRLLKLFLFIGSVGTLAVLFTVLHLTVGDIFASFLAFAPTGWAILQVPPPVSP 454
Query: 339 V 341
+
Sbjct: 453 L 451
>gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 511
Score = 149 bits (319), Expect = 6e-035
Identities = 61/97 (62%), Positives = 72/97 (74%)
Frame = +3 / +1
Query: 276 CILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFV 455
C LAF+PTGWG+ A +P+ GLWGS++ALAR YEI+MG+LLFTPI LA FV
Sbjct: 1 CFLAFLPTGWGILLIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFV 180
Query: 456 SEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE* 566
SEFQTRMLFNQAFS GLQISRI G KK+ +K+*
Sbjct: 181 SEFQTRMLFNQAFSRGLQISRILGGQKKERSARSKD* 291
>gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii39c04, DNA sequence
Length = 589
Score = 148 bits (317), Expect = 1e-034
Identities = 52/62 (83%), Positives = 57/62 (91%)
Frame = +2 / +1
Query: 125 YEDRISGQEKVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPWHDGAGHICLHPCFHAHWM 304
+ DRISGQE+VQCRVPA VPVDQGS IYN YSHRGN NS+PWHDG+GH+CLHPCFHAHWM
Sbjct: 274 FADRISGQEEVQCRVPARVPVDQGSHIYNFYSHRGNLNSNPWHDGSGHLCLHPCFHAHWM 453
Query: 305 GF 310
GF
Sbjct: 454 GF 459
Score = 141 bits (303), Expect = 9e-033
Identities = 60/66 (90%), Positives = 64/66 (96%)
Frame = +3 / +2
Query: 114 ILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFM 293
+ +++TVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFM
Sbjct: 263 LYFLLQTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFM 442
Query: 294 PTGWGL 311
PTGWGL
Sbjct: 443 PTGWGL 460
Score = 137 bits (293), Expect = 2e-031
Identities = 54/64 (84%), Positives = 57/64 (89%)
Frame = -1 / -1
Query: 311 QTPSSGHESKDANKYVQHRHARDRY*DYHDGCKCYKYQTLDQPEH*LELCTEPSPAH*YG 132
QTPSSGHESKDANK VQ+RHARD Y*DYHDGCK YKY+TLDQPEH LELCTEP PAH*YG
Sbjct: 460 QTPSSGHESKDANKDVQNRHARDCY*DYHDGCKSYKYETLDQPEHELELCTEPPPAH*YG 281
Query: 131 LHNE 120
L +
Sbjct: 280 LQKK 269
Score = 132 bits (282), Expect = 7e-030
Identities = 55/60 (91%), Positives = 57/60 (95%)
Frame = -2 / -2
Query: 310 KPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSWNSALNLLLPTDTV 131
KPHPVGMKARMQT MS TVMPGIAI+ITTMAV VIN+RPLINRNTSWNSALNLLLPTDTV
Sbjct: 459 KPHPVGMKARMQTKMSRTVMPGIAIKITTMAVKVINMRPLINRNTSWNSALNLLLPTDTV 280
>gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G03_A002 5', mRNA sequence
Length = 809
Score = 145 bits (312), Expect = 5e-034
Identities = 63/152 (41%), Positives = 91/152 (59%)
Frame = +3 / +3
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y L I++DN++ LVY SWVVI I+ +K V+ RR S + QL+FR IK L F+
Sbjct: 354 YGLVYHLNISQDNKNFLVYLLSWVVIIAIIGFVKLVNCASRRLSTKHQLIFRFIKLLTFL 533
Query: 210 TFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARG 389
+ +++L + +++ D+ +C LAF+PTGWGL +RP I +W I+ +A
Sbjct: 534 SVVTSLILLYCLCQLSIXDLIICCLAFIPTGWGLLLIVQVLRPKIEYYAIWEPIQVIAHA 713
Query: 390 YEILMGLLLFTPIAFLAXXXFVSEFQTRMLFN 485
Y+ MG LLF PIA LA +S QTR+LFN
Sbjct: 714 YDYGMGSLLFFPIAVLAWMPVISAIQTRVLFN 809
>gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 651
Score = 136 bits (291), Expect = 4e-031
Identities = 56/122 (45%), Positives = 81/122 (66%)
Frame = +3 / +2
Query: 168 FQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIH 347
FQL RL+K + + A +V+ I +++ D+F ILAF+PTGWG+ A +PV+
Sbjct: 44 FQLFLRLVKSIALLMVLAGLVLAILFTELSIGDVFASILAFVPTGWGIISIAMAWKPVVK 223
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXX 527
K GLW +++ALAR Y+ G+++F PIA + F+S FQTR+LFNQAFS GL+IS I
Sbjct: 224 KLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILA 403
Query: 528 GH 533
G+
Sbjct: 404 GN 409
>gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 650
Score = 136 bits (291), Expect = 4e-031
Identities = 56/122 (45%), Positives = 81/122 (66%)
Frame = +3 / +2
Query: 168 FQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIH 347
FQL RL+K + + A +V+ I +++ D+F ILAF+PTGWG+ A +PV+
Sbjct: 32 FQLFLRLVKSIALLMVLAGLVLAILFTELSIGDVFASILAFVPTGWGIISIAMAWKPVVK 211
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXX 527
K GLW +++ALAR Y+ G+++F PIA + F+S FQTR+LFNQAFS GL+IS I
Sbjct: 212 KLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILA 391
Query: 528 GH 533
G+
Sbjct: 392 GN 397
>gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 3', mRNA sequence
Length = 735
Score = 135 bits (289), Expect = 8e-031
Identities = 56/122 (45%), Positives = 80/122 (65%)
Frame = +3 / +2
Query: 168 FQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIH 347
FQL RL+K + + A +V+ I +++ D+F ILAF+PTGWG+ A PV+
Sbjct: 125 FQLFLRLVKSIALLMVLAGLVLAILFTELSIGDVFASILAFVPTGWGIISIAMAWNPVVK 304
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXX 527
K GLW +++ALAR Y+ G+++F PIA + F+S FQTR+LFNQAFS GL+IS I
Sbjct: 305 KLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILA 484
Query: 528 GH 533
G+
Sbjct: 485 GN 490
>gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431366, DNA
sequence
Length = 343
Score = 129 bits (276), Expect = 5e-029
Identities = 54/66 (81%), Positives = 61/66 (92%)
Frame = +3 / +2
Query: 114 ILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFM 293
+L ++TVSVGRR+FSAEFQLVFRLIKGLIFITF +I++ILIAIP MTV DIFVCILAFM
Sbjct: 80 VLYRLQTVSVGRRKFSAEFQLVFRLIKGLIFITFISIIIILIAIPHMTVQDIFVCILAFM 259
Query: 294 PTGWGL 311
PTGWGL
Sbjct: 260 PTGWGL 277
Score = 113 bits (242), Expect = 2e-024
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2 / -2
Query: 310 KPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSWNSALNLLLPTDTV 131
KPHPVGM ARMQT MS TVM GIAI I + +NV+NIRPLINRNTSWNSALN LLPTDTV
Sbjct: 276 KPHPVGMNARMQTKMS*TVMCGIAINIMIIEINVMNIRPLINRNTSWNSALNFLLPTDTV 97
Score = 110 bits (234), Expect = 3e-023
Identities = 39/62 (62%), Positives = 50/62 (80%)
Frame = +2 / +1
Query: 125 YEDRISGQEKVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPWHDGAGHICLHPCFHAHWM 304
+ D IS QE++QCRVPA VPVDQGSDI+N+Y + N +S+P HD +GH+CLHPC HA W+
Sbjct: 91 FADCISWQEEIQCRVPACVPVDQGSDIHNVYLYYHNIDSNPTHDSSGHLCLHPCVHADWV 270
Query: 305 GF 310
GF
Sbjct: 271 GF 276
>gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 727
Score = 129 bits (276), Expect = 5e-029
Identities = 54/66 (81%), Positives = 61/66 (92%)
Frame = +3 / -1
Query: 114 ILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFM 293
+L ++TVSVGRR+FSAEFQLVFRLIKGLIFITF +I++ILIAIP MTV DIFVCILAFM
Sbjct: 340 VLYRLQTVSVGRRKFSAEFQLVFRLIKGLIFITFISIIIILIAIPHMTVQDIFVCILAFM 161
Query: 294 PTGWGL 311
PTGWGL
Sbjct: 160 PTGWGL 143
Score = 113 bits (242), Expect = 2e-024
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2 / +3
Query: 310 KPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLINRNTSWNSALNLLLPTDTV 131
KPHPVGM ARMQT MS TVM GIAI I + +NV+NIRPLINRNTSWNSALN LLPTDTV
Sbjct: 144 KPHPVGMNARMQTKMS*TVMCGIAINIMIIEINVMNIRPLINRNTSWNSALNFLLPTDTV 323
Score = 110 bits (234), Expect = 3e-023
Identities = 39/62 (62%), Positives = 50/62 (80%)
Frame = +2 / -3
Query: 125 YEDRISGQEKVQCRVPASVPVDQGSDIYNIYSHRGNPNSDPWHDGAGHICLHPCFHAHWM 304
+ D IS QE++QCRVPA VPVDQGSDI+N+Y + N +S+P HD +GH+CLHPC HA W+
Sbjct: 329 FADCISWQEEIQCRVPACVPVDQGSDIHNVYLYYHNIDSNPTHDSSGHLCLHPCVHADWV 150
Query: 305 GF 310
GF
Sbjct: 149 GF 144
>gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_20_E12_A010 3', mRNA sequence
Length = 634
Score = 125 bits (268), Expect = 6e-028
Identities = 51/115 (44%), Positives = 76/115 (66%)
Frame = +3 / +2
Query: 189 IKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGS 368
+K + + A +V+ I +++ D+F ILAF+PTGWG+ A +PV+ K GLW +
Sbjct: 2 VKSIALLMVLAGLVLAILFTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKT 181
Query: 369 IKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGH 533
++ALAR Y+ G+++F PIA + F+S FQTR+LFNQAFS GL+IS I G+
Sbjct: 182 VRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 346
>gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 590
Score = 124 bits (265), Expect = 2e-027
Identities = 51/114 (44%), Positives = 75/114 (65%)
Frame = +3 / +2
Query: 192 KGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSI 371
K + + A +V+ I +++ D+F ILAF+PTGWG+ A +PV+ K GLW ++
Sbjct: 2 KSIALLMVLAGLVLAILFTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTV 181
Query: 372 KALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGH 533
+ALAR Y+ G+++F PIA + F+S FQTR+LFNQAFS GL+IS I G+
Sbjct: 182 RALARLYDAGTGMIIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 343
>gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140330, DNA
sequence
Length = 721
Score = 122 bits (261), Expect = 6e-027
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +3 / +1
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A +P+ GLWGS++ALAR YEI+MG+LLFTPI LA FVSEFQTRMLFNQAFS GL
Sbjct: 139 ACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGL 318
Query: 507 QISRIXXGHKKDXXTXNKE* 566
QISRI G KK+ +K+*
Sbjct: 319 QISRILGGQKKERSARSKD* 378
>gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470397, DNA
sequence
Length = 730
Score = 122 bits (261), Expect = 6e-027
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +3 / +1
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A +P+ GLWGS++ALAR YEI+MG+LLFTPI LA FVSEFQTRMLFNQAFS GL
Sbjct: 79 ACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGL 258
Query: 507 QISRIXXGHKKDXXTXNKE* 566
QISRI G KK+ +K+*
Sbjct: 259 QISRILGGQKKERSARSKD* 318
>gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 601
Score = 122 bits (260), Expect = 8e-027
Identities = 49/103 (47%), Positives = 71/103 (68%)
Frame = +3 / +1
Query: 225 VVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILM 404
+V+ I +++ D+F ILAF+PTGWG+ A +PV+ K GLW +++ALAR Y+
Sbjct: 31 LVLAILFTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGT 210
Query: 405 GLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGH 533
G+++F PIA + F+S FQTR+LFNQAFS GL+IS I G+
Sbjct: 211 GMIIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 339
>gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 612
Score = 122 bits (260), Expect = 8e-027
Identities = 49/103 (47%), Positives = 71/103 (68%)
Frame = +3 / +3
Query: 225 VVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILM 404
+V+ I +++ D+F ILAF+PTGWG+ A +PV+ K GLW +++ALAR Y+
Sbjct: 33 LVLAILFTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGT 212
Query: 405 GLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGH 533
G+++F PIA + F+S FQTR+LFNQAFS GL+IS I G+
Sbjct: 213 GMIIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 341
>gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 352
Score = 121 bits (259), Expect = 1e-026
Identities = 49/102 (48%), Positives = 70/102 (68%)
Frame = +3 / +1
Query: 228 VILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMG 407
V+ I +++ D+F ILAF+PTGWG+ A +PV+ K GLW +++ALAR Y+ G
Sbjct: 1 VLAILFTELSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTG 180
Query: 408 LLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGH 533
+++F PIA + F+S FQTR+LFNQAFS GL+IS I G+
Sbjct: 181 MIIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 306
>gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 121 bits (258), Expect = 1e-026
Identities = 52/150 (34%), Positives = 84/150 (56%)
Frame = +3 / +1
Query: 102 VIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCI 281
++ V+++++ + S R ++G++ I A +V+LI + T+ D+F
Sbjct: 16 IVLVVMVLLFKLFTATPNKSTALPTFIRFLQGVLAIGIIAGIVLLIVLTSFTIADLFASA 195
Query: 282 LAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSE 461
LAF+ TGW + + V+ LW S++ +AR Y+ MG ++F PI F + FVS
Sbjct: 196 LAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVST 375
Query: 462 FQTRMLFNQAFSXGLQISRIXXGHKKDXXT 551
FQ+R LFNQAFS GL+IS I G+K + T
Sbjct: 376 FQSRFLFNQAFSRGLEISLILAGNKANQQT 465
>gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 3', mRNA sequence
Length = 637
Score = 118 bits (252), Expect = 1e-025
Identities = 52/147 (35%), Positives = 82/147 (55%)
Frame = +3 / +3
Query: 111 VILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAF 290
V+++++ + S R ++G++ I A +V+LI + T+ D+F LAF
Sbjct: 3 VVMVLLFKLFTATPNKSTALPTFIRFLQGVLAIGIIAGIVLLIVLTSFTIADLFASALAF 182
Query: 291 MPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQT 470
+ TGW + + V+ LW S++ +AR Y+ MG ++F PI F + FVS FQ+
Sbjct: 183 IATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQS 362
Query: 471 RMLFNQAFSXGLQISRIXXGHKKDXXT 551
R LFNQAFS GL+IS I G+K + T
Sbjct: 363 RFLFNQAFSRGLEISLILAGNKANQQT 443
>gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 5', mRNA sequence
Length = 612
Score = 117 bits (250), Expect = 2e-025
Identities = 50/123 (40%), Positives = 74/123 (60%)
Frame = +3 / +2
Query: 183 RLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLW 362
R ++G++ I A +V+LI + T+ D+F LAF+ TGW + + V+ LW
Sbjct: 74 RFLQGVLAIGIIAGIVLLIVLTSFTIADLFASALAFIATGWCILCLAVTWKKVVKTLRLW 253
Query: 363 GSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKD 542
S++ +AR Y+ MG ++F PI F + FVS FQ+R LFNQAFS GL+IS I G+K +
Sbjct: 254 DSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKAN 433
Query: 543 XXT 551
T
Sbjct: 434 QQT 442
>gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 3', mRNA sequence
Length = 587
Score = 117 bits (250), Expect = 2e-025
Identities = 50/123 (40%), Positives = 74/123 (60%)
Frame = +3 / +1
Query: 183 RLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLW 362
R ++G++ I A +V+LI + T+ D+F LAF+ TGW + + V+ LW
Sbjct: 58 RFLQGVLAIGIIAGIVLLIVLTSFTIADLFASALAFIATGWCILCLAVTWKKVVKTLRLW 237
Query: 363 GSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKD 542
S++ +AR Y+ MG ++F PI F + FVS FQ+R LFNQAFS GL+IS I G+K +
Sbjct: 238 DSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKAN 417
Query: 543 XXT 551
T
Sbjct: 418 QQT 426
>gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204129, DNA
sequence
Length = 682
Score = 116 bits (249), Expect = 3e-025
Identities = 49/71 (69%), Positives = 57/71 (80%)
Frame = +3 / -2
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A +PVI GLWGS+KAL+RGYE LMG+++F P+A LA FVSEFQTR+LFNQAFS GL
Sbjct: 549 ASKPVIKACGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQTRLLFNQAFSRGL 370
Query: 507 QISRIXXGHKK 539
QISRI G KK
Sbjct: 369 QISRILAGGKK 337
>gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 437
Score = 116 bits (249), Expect = 3e-025
Identities = 50/71 (70%), Positives = 57/71 (80%)
Frame = +3 / +1
Query: 354 GLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGH 533
GLWGS++ALAR YEI+MG+LLFTPI LA FVSEFQTRMLFNQAFS GLQISRI G
Sbjct: 10 GLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQ 189
Query: 534 KKDXXTXNKE* 566
KK+ +K+*
Sbjct: 190 KKERFARSKD* 222
>gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 588
Score = 112 bits (240), Expect(2) = 5e-025
Identities = 45/107 (42%), Positives = 69/107 (64%)
Frame = +3 / +2
Query: 168 FQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIH 347
FQL RL+K + + A +V+ I +++ D+F ILAF+PTGWG+ A +PV+
Sbjct: 221 FQLFLRLVKSIALLMVLAGLVLAILFTELSIGDVFASILAFVPTGWGIISIAMAWKPVVK 400
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQ 488
K GLW +++ALAR Y+ G+++F PIA + F+S FQTR+LF +
Sbjct: 401 KLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRLLFTR 541
Score = 22.6 bits (43), Expect(2) = 5e-025
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +3 / +2
Query: 15 RYGLVYHLNITKKIT 59
+YG+VYH++ +++ T
Sbjct: 83 QYGVVYHMHASREST 127
>gb|CW265210.1|CW265210 104_734_11231740_116_35260_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231740, DNA
sequence
Length = 651
Score = 69.3 bits (145), Expect(2) = 7e-025
Identities = 25/70 (35%), Positives = 46/70 (65%)
Frame = +3 / -1
Query: 102 VIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCI 281
V + + +++ V+ RR S + QL+FR IK L F++ +++L + ++++D+ +C
Sbjct: 648 VQYSFVKLLQLVNCASRRLSTKHQLIFRFIKLLTFLSVVTSLILLYCLCQLSIMDLIICC 469
Query: 282 LAFMPTGWGL 311
LAF+PTGWGL
Sbjct: 468 LAFIPTGWGL 439
Score = 65.7 bits (137), Expect(2) = 7e-025
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +3 / -1
Query: 330 IRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQ 509
+RP I +W I+ +A Y+ MG LLF PIA LA +S QTR+LFN+AFS LQ
Sbjct: 333 LRPKIEYYAIWEPIQVIAHAYDYGMGSLLFFPIAVLAWMPVISAIQTRVLFNRAFSRQLQ 154
Query: 510 I 512
I
Sbjct: 153 I 151
>gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_A03_A002 3', mRNA sequence
Length = 417
Score = 114 bits (244), Expect = 1e-024
Identities = 50/71 (70%), Positives = 56/71 (78%)
Frame = +3 / +2
Query: 354 GLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGH 533
GLWGS+ ALAR YEI+MG+LLFTPI LA FVSEFQTRMLFNQAFS GLQISRI G
Sbjct: 14 GLWGSVGALARPYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQ 193
Query: 534 KKDXXTXNKE* 566
KK+ +K+*
Sbjct: 194 KKERSARSKD* 226
>gb|CL150354.1|CL150354 104_332_10778471_114_31357_023 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778471, DNA
sequence
Length = 534
Score = 104 bits (222), Expect(2) = 5e-024
Identities = 43/65 (66%), Positives = 52/65 (80%)
Frame = +3 / +2
Query: 117 LLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMP 296
L ++TVSVGRR FSA+FQL FRLIK LIF+ FTAI+++LI MT DIFVC LAF+P
Sbjct: 200 LYSLQTVSVGRRTFSADFQLFFRLIKFLIFVAFTAILIVLIVFLHMTFRDIFVCFLAFLP 379
Query: 297 TGWGL 311
TGWG+
Sbjct: 380 TGWGI 394
Score = 27.6 bits (54), Expect(2) = 5e-024
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3 / +1
Query: 81 VYCFSWVVIFVILLVMK 131
VY SW+VI +L VMK
Sbjct: 25 VYLMSWLVIVAVLFVMK 75
>gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 508
Score = 110 bits (234), Expect = 3e-023
Identities = 44/84 (52%), Positives = 60/84 (71%)
Frame = +3 / +1
Query: 282 LAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSE 461
LAF+PTGWG+ A +PV+ K GLW +++ALAR Y+ G+++F PIA + F+S
Sbjct: 1 LAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFIST 180
Query: 462 FQTRMLFNQAFSXGLQISRIXXGH 533
FQTR+LFNQAFS GL+IS I G+
Sbjct: 181 FQTRLLFNQAFSRGLEISLILAGN 252
>gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 108 bits (231), Expect = 8e-023
Identities = 46/108 (42%), Positives = 65/108 (60%)
Frame = +3 / +2
Query: 228 VILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMG 407
V+LI + T+ D+F LAF+ TGW + + V+ LW S++ +AR Y+ MG
Sbjct: 2 VLLIVLTSFTIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMG 181
Query: 408 LLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXT 551
++F PI F + FVS FQ+R LFNQAFS GL+IS I G+K + T
Sbjct: 182 AIIFVPIVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKANQQT 325
>gb|CD219670.1|CD219670 CCC1_58_A07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A07_A007 3', mRNA sequence
Length = 669
Score = 67.0 bits (140), Expect(2) = 8e-023
Identities = 27/60 (45%), Positives = 41/60 (68%)
Frame = +3 / +1
Query: 357 LWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
+W ++ +AR Y+IL G+++ P+A L+ + E QTR+LFN+AFS GL IS+I G K
Sbjct: 238 VWKTVVTVARLYDILFGVIVMAPVAVLSWLPGLQEMQTRILFNEAFSRGLHISQIITGKK 417
Score = 61.1 bits (127), Expect(2) = 8e-023
Identities = 23/74 (31%), Positives = 43/74 (58%)
Frame = +3 / +1
Query: 132 TVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGL 311
TV+ R R+SA+ + +RL++ +I + A +V+L+ +D F +LAF+PTGWG+
Sbjct: 10 TVAYFRDRYSAKKHIRYRLVQAIIVGSTVAAIVVLLEFTKFQFVDTFTSLLAFLPTGWGI 189
Query: 312 XXXXXAIRPVIHKT 353
+P + ++
Sbjct: 190 VSIALVFKPYLRRS 231
>gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F10_A002 3', mRNA sequence
Length = 673
Score = 105 bits (225), Expect = 5e-022
Identities = 45/86 (52%), Positives = 56/86 (65%)
Frame = +3 / +1
Query: 279 ILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVS 458
+LAF+PTGWGL IRP I T +W SI ++AR YEIL+G + P+A L+
Sbjct: 1 LLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGAFIMAPVALLSWLPGFQ 180
Query: 459 EFQTRMLFNQAFSXGLQISRIXXGHK 536
E QTR+LFN+ FS GLQISRI G K
Sbjct: 181 EMQTRVLFNEGFSRGLQISRILTGKK 258
>gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512756, DNA
sequence
Length = 421
Score = 103 bits (219), Expect = 4e-021
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = +3 / +3
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A P+I +T LW SI L R YE +MGL+LF PI FL+ FVSEFQTR+LFNQAFS GL
Sbjct: 3 ACSPLIRRTMLWDSIMELGRSYENIMGLILFLPIGFLSWFPFVSEFQTRLLFNQAFSRGL 182
Query: 507 QISRIXXGHK 536
QISRI G K
Sbjct: 183 QISRILAGQK 212
>gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154083, DNA
sequence
Length = 690
Score = 103 bits (219), Expect = 4e-021
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = +3 / -2
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A P+I +T LW SI L R YE +MGL+LF PI FL+ FVSEFQTR+LFNQAFS GL
Sbjct: 488 ACSPLIRRTMLWDSIMELGRSYENIMGLILFLPIGFLSWFPFVSEFQTRLLFNQAFSRGL 309
Query: 507 QISRIXXGHK 536
QISRI G K
Sbjct: 308 QISRILAGQK 279
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 655,125,533
Number of Sequences: 832831
Number of extensions: 8553025
Number of successful extensions: 52167
Number of sequences better than 1.0e-020: 38
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21624090124
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)