TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405087.2.1
(737 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW435810.1|CW435810 fsbb001f152c06k0 Sorghum methylation... 259 1e-091
gb|CN130960.1|CN130960 RHOH1_45_B03.b1_A002 Acid- and alkal... 295 4e-079
gb|BE364125.1|BE364125 PI1_11_D07.g1_A002 Pathogen induced ... 248 1e-064
gb|BG050804.1|BG050804 FM1_70_H01.b1_A003 Floral-Induced Me... 178 8e-060
gb|CX614951.1|CX614951 GABR1_17_F12.b1_A002 GA- or brassino... 90 5e-033
gb|CL184321.1|CL184321 104_397_10898775_114_32360_056 Sorgh... 142 5e-033
gb|BG488446.1|BG488446 RHIZ2_63_G11.b1_A003 Rhizome2 (RHIZ2... 111 9e-029
gb|BG050643.1|BG050643 FM1_70_H01.g1_A003 Floral-Induced Me... 128 1e-028
gb|CW078961.1|CW078961 104_397_10898775_114_32380_056 Sorgh... 88 4e-022
>gb|CW435810.1|CW435810 fsbb001f152c06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f152c06, DNA
sequence
Length = 735
Score = 259 bits (561), Expect(2) = 1e-091
Identities = 105/110 (95%), Positives = 108/110 (98%)
Frame = +2 / -2
Query: 281 ISEIHSLLLSGGMLPTDFDAFICNSGSNIYYPSHSRETSNNSKITFALDQNHQSHIEYRW 460
ISEI+SLLLSGGMLPTDFDAFICNSGSNIYYPS+S ET NNSKITFALDQNHQSHIEYRW
Sbjct: 734 ISEINSLLLSGGMLPTDFDAFICNSGSNIYYPSYSGETPNNSKITFALDQNHQSHIEYRW 555
Query: 461 GGEGLRKYLVKWATSVVERKGRTERQIIFEDPEHSSAYCLAFRVVNPNHL 610
GGEGLRKYLVKWATSVVERKGRTERQIIFEDPEHSSAYCLAFRVVNPNH+
Sbjct: 554 GGEGLRKYLVKWATSVVERKGRTERQIIFEDPEHSSAYCLAFRVVNPNHV 405
Score = 226 bits (488), Expect(2) = 2e-081
Identities = 102/109 (93%), Positives = 103/109 (94%)
Frame = -3 / +1
Query: 606 *LGLTTLNARQYAEECSGSSKIICLSVLPFLSTTEVAHFTRYFLRPSPPQRYSICDW*F* 427
*LGLTTLNARQ AEECSGSSKIICLSVLPFLSTTEVAHFTRYFL PSPPQRYSICDW*F*
Sbjct: 409 *LGLTTLNARQ*AEECSGSSKIICLSVLPFLSTTEVAHFTRYFLSPSPPQRYSICDW*F* 588
Query: 426 SNANVILELFDVSLECEG**MLLPLLQMKASKSVGSMPPDSSSECISDI 280
SNANVILELF VS E EG**MLLPLLQMKASKSVGSMPPD+SSE ISDI
Sbjct: 589 SNANVILELFGVSPEYEG**MLLPLLQMKASKSVGSMPPDNSSEFISDI 735
Score = 223 bits (481), Expect(2) = 1e-078
Identities = 97/109 (88%), Positives = 101/109 (92%)
Frame = +3 / -3
Query: 282 YQKYIHCYYLEACFPLILMLSSAIVGVTFTILHIPEKRQTTPRLHLH*IKITSHILSIVG 461
YQ+ IHCYYL ACFPLILMLSSAIVGVTFTILHIP K QTTPRLHLH*IKITSHI SIVG
Sbjct: 733 YQR*IHCYYLVACFPLILMLSSAIVGVTFTILHIPVKHQTTPRLHLH*IKITSHISSIVG 554
Query: 462 EEKA*GNIL*SGPLQW*KEREEQRDKLFLKIQSTLRRIVLHLEWLIPII 608
EEK *GNIL*SGPLQW*KEREEQR KLFLKIQ+TL+ IVLHLEWLIPI+
Sbjct: 553 EEKD*GNIL*SGPLQW*KEREEQRGKLFLKIQNTLQPIVLHLEWLIPIM 407
Score = 215 bits (463), Expect(2) = 7e-077
Identities = 96/109 (88%), Positives = 102/109 (93%)
Frame = -2 / +3
Query: 607 MIGINHSKCKTIRRRVLWIFKNNLSLCSSLSFYH*SGPLHKIFP*AFSSPTILNM*LVIL 428
MIGINHSKCKTI RV WIFKNNL LCSSLSFYH*SGPLHKIFP*+FSSPTIL+M*LVIL
Sbjct: 408 MIGINHSKCKTIG*RVFWIFKNNLPLCSSLSFYH*SGPLHKIFP*SFSSPTILDM*LVIL 587
Query: 427 I*CKCNLGVV*RFSGM*RIVNVTPTIADESIKISGKHASR**Q*MYF*Y 281
I*CKCNLGVV F+G+*RIVNVTPTIADESIKISGKHA+R**Q*+Y *Y
Sbjct: 588 I*CKCNLGVVWCFTGI*RIVNVTPTIADESIKISGKHATR**Q*IYL*Y 734
Score = 201 bits (434), Expect(2) = 2e-071
Identities = 87/113 (76%), Positives = 92/113 (81%)
Frame = -1 / +2
Query: 620 LKEEDDWD*PL*MQDNTPKSALDLQK*FVSXXXXXXXXLKWPTSQDISLGLLLPNDTQYV 441
+K DWD*PL*MQDN KS LDLQK*F S LKWPTSQDISL LLLPNDT+YV
Sbjct: 395 IKGLHDWD*PL*MQDNRLKSVLDLQK*FASLFFPFFLPLKWPTSQDISLVLLLPNDTRYV 574
Query: 440 TGDFDLMQM*SWSCLTFLWNVKDSKCYSHYCR*KHQNQWEACLQIVAVNVFLI 282
TGDFDLMQM*SWSCL F N+KDSKCYSHYCR*KHQNQWEAC QI+AVN+ LI
Sbjct: 575 TGDFDLMQM*SWSCLVFHRNMKDSKCYSHYCR*KHQNQWEACHQIIAVNLSLI 733
Score = 198 bits (427), Expect(2) = 1e-066
Identities = 84/99 (84%), Positives = 88/99 (88%)
Frame = +1 / -1
Query: 280 DIRNTFTATIWRHASH*F*CFHLQ*WE*HLLSFTFQRNVKQLQDYICIRSKSPVTY*VSL 459
+IR+ FTA IW HASH*F*CFHLQ*WE*HLLSF F+ N KQLQDYICIRSKSPVTY VSL
Sbjct: 735 NIRDKFTAIIWWHASH*F*CFHLQ*WE*HLLSFIFR*NTKQLQDYICIRSKSPVTYRVSL 556
Query: 460 GRRRPKEISCEVGHFSGRKKGKNRETNYF*RSRALFGVL 576
GRRR KEISCEVGHFSGRKKGKNRE NYF*RSR LF +L
Sbjct: 555 GRRRTKEISCEVGHFSGRKKGKNREANYF*RSRTLFSLL 439
Score = 100 bits (214), Expect(2) = 1e-091
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +2 / -2
Query: 608 LPPLKELRKLMRIQSLRCNALYNHSATRLSVVPIHASRSQALR 736
LPPLKELRKLMRIQSLRCNALYNHSATRLSVVPIHASRSQALR
Sbjct: 281 LPPLKELRKLMRIQSLRCNALYNHSATRLSVVPIHASRSQALR 153
Score = 100 bits (212), Expect(2) = 2e-081
Identities = 40/42 (95%), Positives = 41/42 (97%)
Frame = -3 / +1
Query: 735 LRA*ERDAWIGTTDNLVALWLYNALQRRDWILINFLNSFKGG 610
LRA*+ DAWIGTTDNLVALWLYNALQRRDWILINFLNSFKGG
Sbjct: 154 LRA*DLDAWIGTTDNLVALWLYNALQRRDWILINFLNSFKGG 279
Score = 96.4 bits (204), Expect(2) = 7e-077
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = -1 / +2
Query: 737 TLEPESVMRG*GLQIIW*RCGYIMHCNGEIGFSSTSSTPLKEE 609
TLEPE +MRG*GLQIIW*RCGY MHCNGEIGFSSTSS PLKEE
Sbjct: 152 TLEPEILMRG*GLQIIW*RCGYTMHCNGEIGFSSTSSIPLKEE 280
Score = 94.1 bits (199), Expect(2) = 1e-078
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = +1 / -1
Query: 616 FKGVEEVDENPISPLQCII*PQRYQIICSPYPRITLSGSK 735
FKG+EEVDENPISPLQCI+*PQRYQIICSPYPRI +SGSK
Sbjct: 273 FKGIEEVDENPISPLQCIV*PQRYQIICSPYPRIKISGSK 154
Score = 89.5 bits (189), Expect(2) = 2e-071
Identities = 40/44 (90%), Positives = 42/44 (95%)
Frame = -2 / +3
Query: 736 P*SLRA*CVDRDYR*SGSAVVI*CIATERLDSHQLPQLL*RRKM 605
P*SLR+*CVDRDYR*SGSAVVI CIATERLDSHQLPQ L*RRK+
Sbjct: 153 P*SLRS*CVDRDYR*SGSAVVIQCIATERLDSHQLPQFL*RRKL 284
Score = 79.0 bits (166), Expect(2) = 1e-066
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = +3 / -3
Query: 609 FLL*RS*GS**ESNLSVAMHYITTALPDYL*SLSTHHALRL*G 737
FLL*R+*GS**ESNLSVAMH ITTALPDYL*SLSTH LRL*G
Sbjct: 280 FLL*RN*GS**ESNLSVAMHCITTALPDYL*SLSTHQDLRL*G 152
>gb|CN130960.1|CN130960 RHOH1_45_B03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_45_B03_A002 3', mRNA sequence
Length = 836
Score = 295 bits (639), Expect = 4e-079
Identities = 118/141 (83%), Positives = 131/141 (92%)
Frame = +2 / +3
Query: 314 GMLPTDFDAFICNSGSNIYYPSHSRETSNNSKITFALDQNHQSHIEYRWGGEGLRKYLVK 493
GMLPTDFDAFICNSGS+IYYPS S + +NS++TFALD N++SHIEYRWGGEGLRKYLVK
Sbjct: 12 GMLPTDFDAFICNSGSDIYYPSQSSDVPSNSRVTFALDHNYRSHIEYRWGGEGLRKYLVK 191
Query: 494 WATSVVERKGRTERQIIFEDPEHSSAYCLAFRVVNPNHLPPLKELRKLMRIQSLRCNALY 673
WA+SVVER+GRTE+QIIFED EHSS Y LAFRVVNPNHLPPLKEL+KLMRIQSLRC+ALY
Sbjct: 192 WASSVVERRGRTEKQIIFEDSEHSSTYRLAFRVVNPNHLPPLKELQKLMRIQSLRCHALY 371
Query: 674 NHSATRLSVVPIHASRSQALR 736
NH A RLSV+PIHASRSQALR
Sbjct: 372 NHGAARLSVIPIHASRSQALR 434
Score = 235 bits (507), Expect = 7e-061
Identities = 103/141 (73%), Positives = 115/141 (81%)
Frame = -3 / -2
Query: 735 LRA*ERDAWIGTTDNLVALWLYNALQRRDWILINFLNSFKGGR*LGLTTLNARQYAEECS 556
LRA*+RDA IG TD+L A WLY A QR DWILINF +SFKGG+* GLTTLNAR+Y EECS
Sbjct: 433 LRA*DRDA*IGITDSLAAPWLYRA*QRSDWILINFCSSFKGGK*FGLTTLNARRYVEECS 254
Query: 555 GSSKIICLSVLPFLSTTEVAHFTRYFLRPSPPQRYSICDW*F*SNANVILELFDVSLECE 376
SSK+IC SVLP LSTTE AH T+YFL+PSPPQRYSICD * SNANV EL SL+C+
Sbjct: 253 ESSKMICFSVLPLLSTTEEAHLTKYFLKPSPPQRYSICDR*LWSNANVTRELLGTSLDCD 74
Query: 375 G**MLLPLLQMKASKSVGSMP 313
G* + LPLL +KASKSVGSMP
Sbjct: 73 G*YISLPLLHIKASKSVGSMP 11
Score = 169 bits (363), Expect = 5e-041
Identities = 79/141 (56%), Positives = 104/141 (73%)
Frame = -2 / -1
Query: 736 P*SLRA*CVDRDYR*SGSAVVI*CIATERLDSHQLPQLL*RRKMIGINHSKCKTIRRRVL 557
P*SLR+ C++ +YR* G A+VI + T+ LDSHQL QLL RR+MI INHSKCKTI RV
Sbjct: 434 P*SLRSRCMNWNYR*PGGAMVIQSMTTQ*LDSHQLLQLLQRRQMIWINHSKCKTIC*RVF 255
Query: 556 WIFKNNLSLCSSLSFYH*SGPLHKIFP*AFSSPTILNM*LVILI*CKCNLGVV*RFSGM* 377
IFK++L CS SFY+* PL+ + P* FSSPTIL+M* V+++ CKCN G+ + +*
Sbjct: 254 *IFKDDLLFCSPPSFYY*RSPLN*VLP*TFSSPTILDM*SVVMVQCKCNTGIAWHITRL* 75
Query: 376 RIVNVTPTIADESIKISGKHA 314
I+ +TPTIA + IK+S +HA
Sbjct: 74 WIIYITPTIAYKGIKVSREHA 12
Score = 142 bits (305), Expect = 5e-033
Identities = 74/145 (51%), Positives = 88/145 (60%)
Frame = -1 / -3
Query: 737 TLEPESVMRG*GLQIIW*RCGYIMHCNGEIGFSSTSSTPLKEEDDWD*PL*MQDNTPKSA 558
TLEPE M LQI W R GY H N GFSST + P KE +D D*PL*MQD+ KS
Sbjct: 435 TLEPEIAMHELELQIAWRRHGYTEHDNAVTGFSSTFAAPSKEANDLD*PL*MQDDMLKSV 256
Query: 557 LDLQK*FVSXXXXXXXXLKWPTSQDISLGLLLPNDTQYVTGDFDLMQM*SWSCLTFLWNV 378
L+LQ+*F LK PT SL LLLPNDT+YV G + MQM* +CL V
Sbjct: 255 LNLQR*FAFLFSPFFLLLKKPT*LSTSLNLLLPNDTRYVIGSYGPMQM*HGNCLAHH*IV 76
Query: 377 KDSKCYSHYCR*KHQNQWEACLQIV 303
D+ +SHYC *+HQ+Q ACL ++
Sbjct: 75 MDNIYHSHYCI*RHQSQ*GACLCVL 1
Score = 139 bits (299), Expect = 3e-032
Identities = 83/144 (57%), Positives = 90/144 (62%)
Frame = +3 / +1
Query: 306 YLEACFPLILMLSSAIVGVTFTILHIPEKRQTTPRLHLH*IKITSHILSIVGEEKA*GNI 485
Y +AC L LM AIVGV + I H Q P LHLH T HI SIVGEEK *G+
Sbjct: 4 YAQACSLLTLMPLYAIVGVIYIIHHNLVMCQAIPVLHLHWTITTDHISSIVGEEKV*GST 183
Query: 486 L*SGPLQW*KEREEQRDKLFLKIQSTLRRIVLHLEWLIPIIFLL*RS*GS**ESNLSVAM 665
SG LQ *KE EQ+ K LKIQ+TL+ IVLHLEWLI II LL*RS S**ES+ V M
Sbjct: 184 *LSGLLQ**KEGGEQKSKSSLKIQNTLQHIVLHLEWLIQIICLL*RSCKS**ESSHCVVM 363
Query: 666 HYITTALPDYL*SLSTHHALRL*G 737
IT A P YL* H LRL*G
Sbjct: 364 LCITMAPPGYL*FQFMHRDLRL*G 435
Score = 103 bits (219), Expect(2) = 3e-030
Identities = 48/87 (55%), Positives = 59/87 (67%)
Frame = +1 / +2
Query: 313 RHASH*F*CFHLQ*WE*HLLSFTFQRNVKQLQDYICIRSKSPVTY*VSLGRRRPKEISCE 492
RHA +* *C ++Q*WE*++LS T KQ YICI P+TY VSLGRRR KE+
Sbjct: 11 RHAPY*L*CLYMQ*WE*YILSITI**CAKQFPCYICIGP*LPITYRVSLGRRRFKEVLS* 190
Query: 493 VGHFSGRKKGKNRETNYF*RSRALFGV 573
VG FS RKKG+NR+ N+ *R R LF +
Sbjct: 191 VGFFSSRKKGENRKANHL*RFRTLFNI 271
Score = 50.1 bits (103), Expect(2) = 3e-030
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = +1 / +2
Query: 616 FKGVEEVDENPISPLQCII*PQRYQIICSPYPRITLSGSK 735
F+G +VDENP++ L C +*P R Q IC+ I +SGSK
Sbjct: 314 FEGAAKVDENPVTALSCSV*PWRRQAICNSNSCIAISGSK 433
>gb|BE364125.1|BE364125 PI1_11_D07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 653
Score = 248 bits (535), Expect = 1e-064
Identities = 98/116 (84%), Positives = 110/116 (94%)
Frame = +2 / +1
Query: 389 ETSNNSKITFALDQNHQSHIEYRWGGEGLRKYLVKWATSVVERKGRTERQIIFEDPEHSS 568
+ +NS++TFALD N++SHIEYRWGGEGLRKYLVKWA+SVVER+GRTE+QIIFED EHSS
Sbjct: 4 DVPSNSRVTFALDHNYRSHIEYRWGGEGLRKYLVKWASSVVERRGRTEKQIIFEDSEHSS 183
Query: 569 AYCLAFRVVNPNHLPPLKELRKLMRIQSLRCNALYNHSATRLSVVPIHASRSQALR 736
YCLAFRVVNPNHLPPLKEL+KLMRIQSLRC+ALYNH ATRLSV+PIHASRSQALR
Sbjct: 184 TYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPIHASRSQALR 351
Score = 199 bits (428), Expect = 6e-050
Identities = 87/116 (75%), Positives = 94/116 (81%)
Frame = -3 / -1
Query: 735 LRA*ERDAWIGTTDNLVALWLYNALQRRDWILINFLNSFKGGR*LGLTTLNARQYAEECS 556
LRA*+RDA IG TD+LVA WLY A QR DWILINF +SFKGG+* GLTTLNARQY EECS
Sbjct: 350 LRA*DRDA*IGITDSLVAPWLYRA*QRSDWILINFCSSFKGGK*FGLTTLNARQYVEECS 171
Query: 555 GSSKIICLSVLPFLSTTEVAHFTRYFLRPSPPQRYSICDW*F*SNANVILELFDVS 388
SSK+IC SVLP LSTTE AH T+YFL+PSPPQRYSICD * SNANV EL S
Sbjct: 170 ESSKMICFSVLPLLSTTEEAHLTKYFLKPSPPQRYSICDR*LWSNANVTRELLGTS 3
Score = 144 bits (310), Expect = 1e-033
Identities = 67/112 (59%), Positives = 85/112 (75%)
Frame = -2 / -3
Query: 736 P*SLRA*CVDRDYR*SGSAVVI*CIATERLDSHQLPQLL*RRKMIGINHSKCKTIRRRVL 557
P*SLR+ C++ +YR* G A+VI + T+ LDSHQL QLL RR+MI INHSKCKTI RV
Sbjct: 351 P*SLRSRCMNWNYR*PGGAMVIQSMTTQ*LDSHQLLQLLQRRQMIWINHSKCKTIC*RVF 172
Query: 556 WIFKNNLSLCSSLSFYH*SGPLHKIFP*AFSSPTILNM*LVILI*CKCNLGV 401
IFK++L CS SFY+* PL+ + P* FSSPTIL+M* V+++ CKCN G+
Sbjct: 171 *IFKDDLLFCSPPSFYY*RSPLN*VLP*TFSSPTILDM*SVVMVQCKCNTGI 16
Score = 121 bits (258), Expect = 2e-026
Identities = 70/114 (61%), Positives = 75/114 (65%)
Frame = +3 / +2
Query: 396 QTTPRLHLH*IKITSHILSIVGEEKA*GNIL*SGPLQW*KEREEQRDKLFLKIQSTLRRI 575
Q P LHLH T HI SIVGEEK *G+ SG LQ *KE EQ+ K LKIQ+TL+ I
Sbjct: 11 QAIPVLHLHWTITTDHISSIVGEEKV*GST*LSGLLQ**KEGGEQKSKSSLKIQNTLQHI 190
Query: 576 VLHLEWLIPIIFLL*RS*GS**ESNLSVAMHYITTALPDYL*SLSTHHALRL*G 737
VLHLEWLI II LL*RS S**ES+ V M IT A P YL* H LRL*G
Sbjct: 191 VLHLEWLIQIICLL*RSCKS**ESSHCVVMLCITMAPPGYL*FQFMHRDLRL*G 352
Score = 119 bits (255), Expect = 4e-026
Identities = 62/114 (54%), Positives = 69/114 (60%)
Frame = -1 / -2
Query: 737 TLEPESVMRG*GLQIIW*RCGYIMHCNGEIGFSSTSSTPLKEEDDWD*PL*MQDNTPKSA 558
TLEPE M LQI W R GY H N GFSST + P KE +D D*PL*MQDN KS
Sbjct: 352 TLEPEIAMHELELQIAWWRHGYTEHDNAVTGFSSTFAAPSKEANDLD*PL*MQDNMLKSV 173
Query: 557 LDLQK*FVSXXXXXXXXLKWPTSQDISLGLLLPNDTQYVTGDFDLMQM*SWSCL 396
L+LQ+*F LK PT SL LLLPNDT+YV G + MQM* +CL
Sbjct: 172 LNLQR*FAFLFSPFFLLLKKPT*LSTSLNLLLPNDTRYVIGSYGPMQM*HGNCL 11
Score = 119 bits (254), Expect = 6e-026
Identities = 55/113 (48%), Positives = 69/113 (61%)
Frame = +1 / +3
Query: 397 KQLQDYICIRSKSPVTY*VSLGRRRPKEISCEVGHFSGRKKGKNRETNYF*RSRALFGVL 576
KQ YICI P+TY VSLGRRR KE+ VG FS RKKG+NR+ N+ *R R LF +L
Sbjct: 12 KQFPCYICIGP*LPITYRVSLGRRRFKEVLS*VGFFSSRKKGENRKANHL*RFRTLFNIL 191
Query: 577 XXXXXXXXXXXXXFKGVEEVDENPISPLQCII*PQRYQIICSPYPRITLSGSK 735
F+G +VDENP++ L C +*P R+Q IC+ I +SGSK
Sbjct: 192 SCI*SG*SKSFASFEGAAKVDENPVTALSCSV*PWRHQAICNSNSCIAISGSK 350
>gb|BG050804.1|BG050804 FM1_70_H01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 438
Score = 178 bits (383), Expect(2) = 8e-060
Identities = 72/114 (63%), Positives = 92/114 (80%)
Frame = +2 / +3
Query: 113 EERSNTPISGRKNIIVISVDSVNKEGLVRIIRNAIEVIHKENMSGSTGFVLSTSLTISEI 292
+E P+ RK+I VI+VDSVNKE L++IIRN++E MSGSTGFVLSTSLTI+E+
Sbjct: 96 KEDQKVPVKCRKHIFVIAVDSVNKEDLIQIIRNSVEATRTGTMSGSTGFVLSTSLTIAEL 275
Query: 293 HSLLLSGGMLPTDFDAFICNSGSNIYYPSHSRETSNNSKITFALDQNHQSHIEY 454
S+++ GMLPTDFDAFICNSGS+IYYPS S + +NS++TFALD N++SHIEY
Sbjct: 276 QSVIVRTGMLPTDFDAFICNSGSDIYYPSQSSDVPSNSRVTFALDHNYRSHIEY 437
Score = 130 bits (278), Expect(2) = 4e-040
Identities = 65/113 (57%), Positives = 77/113 (68%)
Frame = -3 / -3
Query: 453 YSICDW*F*SNANVILELFDVSLECEG**MLLPLLQMKASKSVGSMPPDSSSECISDIVK 274
YSICD * SNANV EL SL+C+G* + LPLL +KASKSVGSMP + ++C S IV
Sbjct: 436 YSICDR*LWSNANVTRELLGTSLDCDG*YISLPLLHIKASKSVGSMPVRTITDCSSAIVS 257
Query: 273 EVDSTKPVEPDMFSLCMTSIAFLIILTRPSLLTESTEITMIFFLPEIGVLLRS 115
EVD+TKPVEPD+ + + S FLII + SLLTEST IT I FL G S
Sbjct: 256 EVDNTKPVEPDIVPVRVASTEFLII*IKSSLLTESTAITNICFLHFTGTFWSS 98
Score = 98.2 bits (208), Expect(2) = 2e-026
Identities = 48/102 (47%), Positives = 62/102 (60%)
Frame = +1 / +2
Query: 142 KEEYHCYFCRLC*QGRSSQDNQKCY*GHT*RKHVGFNWFCAVNFLNDIRNTFTATIWRHA 321
+E Y CY CRL *QGR + + QK *GHT +V F FC V+F ++ R T + RHA
Sbjct: 125 QEAYICYCCRLR*QGRFNSNYQKFC*GHTHWNYVRFYRFCVVDFTDNSRATVCNSTHRHA 304
Query: 322 SH*F*CFHLQ*WE*HLLSFTFQRNVKQLQDYICIRSKSPVTY 447
+* *C ++Q*WE*++LS T KQ YICI P+TY
Sbjct: 305 PY*L*CLYMQ*WE*YILSITV**CAKQFPCYICIGP*LPITY 430
Score = 90.0 bits (190), Expect(2) = 2e-025
Identities = 50/104 (48%), Positives = 65/104 (62%)
Frame = -1 / -1
Query: 455 DTQYVTGDFDLMQM*SWSCLTFLWNVKDSKCYSHYCR*KHQNQWEACLQIVAVNVFLISL 276
DT+YV G + MQM* +CL V D+ +SHYC *+HQ+Q ACL ++ V L+
Sbjct: 438 DTRYVIGSYGPMQM*HGNCLAHH*TVMDNIYHSHYCI*RHQSQ*GACLCVLLQTVALLLS 259
Query: 275 RKLTAQNQLNPTCFLYV*PQ*HF*LS*LDLPC*QSLQK*Q*YSS 144
K T QN N T F V PQ +F* L+LPC*+SLQ+*Q Y+S
Sbjct: 258 VKSTTQNL*NLT*FQCVWPQQNF**FELNLPC*RSLQQ*QIYAS 127
Score = 86.3 bits (182), Expect(2) = 2e-021
Identities = 51/104 (49%), Positives = 60/104 (57%)
Frame = +3 / +1
Query: 144 GRISLLFL*TLLTRKV*SG*SEMLLRSYIKKTCRVQLVLCCQLP*RYQKYIHCYYLEACF 323
G I LL L*T LTRK+* SE+LLR + + C+V VLCC+L *+ Q Y Y +AC
Sbjct: 127 GSIYLLLL*TPLTRKI*FKLSEILLRPHALELCQVLQVLCCRLH*Q*QSYSL**YAQACS 306
Query: 324 PLILMLSSAIVGVTFTILHIPEKRQTTPRLHLH*IKITSHILSI 455
L LM AIVGV + I H Q P LHLH T HI SI
Sbjct: 307 LLTLMPLYAIVGVIYIIHHSLVMCQAIPVLHLHWTITTDHISSI 438
Score = 73.9 bits (155), Expect(2) = 8e-060
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = +2 / +3
Query: 17 TNIHQFSWPEHCKNYLSRILTLGPRSPAIGNREER 121
T IHQFSWPEHCKNYLSRILTLGPR PA +E++
Sbjct: 3 TRIHQFSWPEHCKNYLSRILTLGPRHPAFACKEDQ 107
Score = 56.1 bits (116), Expect(2) = 4e-040
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = -3 / -3
Query: 117 SSLLPIAGDLGPRVSILDR*FLQCSGHENW*IFV 16
SSL AG LGPRV+ILD+*FLQCSG ENW I V
Sbjct: 103 SSLHAKAGCLGPRVNILDK*FLQCSGQENWCILV 2
Score = 53.8 bits (111), Expect(3) = 7e-022
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = -2 / -2
Query: 454 ILNM*LVILI*CKCNLGVV*RFSGM*RIVNVTPTIADESIKISGKHA 314
IL+M* V+++ CKCN G+ + +* I+ +TPTIA + IK+S +HA
Sbjct: 437 ILDM*SVVMVQCKCNTGIAWHITRL*WIIYITPTIAYKGIKVSREHA 297
Score = 47.3 bits (97), Expect(2) = 2e-025
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -2 / -2
Query: 100 SRRPWAKS*YP*QVILAMFRPRELV 26
SR W +S*YP*QVILAMFRPR+LV
Sbjct: 86 SRMSWTQS*YP*QVILAMFRPRKLV 12
Score = 45.5 bits (93), Expect(3) = 7e-022
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = -1 / -1
Query: 122 SAPLCYQ*QETLGQELVSLTGNSCNVQATRIG 27
S LC + Q+ L EL+SLT NSCNVQA +IG
Sbjct: 108 SGLLCMRKQDVLDPELISLTSNSCNVQAKKIG 13
Score = 43.2 bits (88), Expect(3) = 7e-022
Identities = 23/45 (51%), Positives = 27/45 (60%)
Frame = -2 / -2
Query: 265 QHKTS*TRHVFFMYDLNSISDYPD*TFLVNRVYRNNNDILPS*NR 131
QHKT T H LN ISD +* FLVN VY NN +LP+ +R
Sbjct: 248 QHKTCRT*HSSSACGLNRISDNLN*IFLVNGVYSNNKYMLPALHR 114
Score = 41.8 bits (85), Expect(2) = 2e-026
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +1 / +2
Query: 25 SPILVA*TLQELPVKDTNSWPKVSCYW*QRGAE 123
+PI +A*TLQEL VKD NS K SC+ QR E
Sbjct: 11 TPIFLA*TLQELLVKDINSGSKTSCFRMQRRPE 109
Score = 37.3 bits (75), Expect(2) = 2e-021
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3 / +1
Query: 24 FTNSRGLNIARITCQGY 74
+TN GLNIARITCQGY
Sbjct: 10 YTNFLGLNIARITCQGY 60
>gb|CX614951.1|CX614951 GABR1_17_F12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_17_F12_A002 3', mRNA sequence
Length = 740
Score = 90.0 bits (190), Expect(2) = 5e-033
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +2 / +2
Query: 614 PLKELRKLMRIQSLRCNALYNHSATRLSVVPIHASRSQALR 736
P ELRKLMRIQSLRCNALYNHSATRLSVVPIHASRSQALR
Sbjct: 80 PNHELRKLMRIQSLRCNALYNHSATRLSVVPIHASRSQALR 202
Score = 89.5 bits (189), Expect(2) = 7e-030
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = -3 / -3
Query: 735 LRA*ERDAWIGTTDNLVALWLYNALQRRDWILINFLNS 622
LRA*+ DAWIGTTDNLVALWLYNALQRRDWILINFLNS
Sbjct: 201 LRA*DLDAWIGTTDNLVALWLYNALQRRDWILINFLNS 88
Score = 86.3 bits (182), Expect(2) = 1e-027
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +1 / +1
Query: 625 VEEVDENPISPLQCII*PQRYQIICSPYPRITLSGSK 735
+EEVDENPISPLQCI+*PQRYQIICSPYPRI +SGSK
Sbjct: 91 IEEVDENPISPLQCIV*PQRYQIICSPYPRIKISGSK 201
Score = 84.9 bits (179), Expect(2) = 3e-028
Identities = 34/37 (91%), Positives = 35/37 (94%)
Frame = -1 / -1
Query: 737 TLEPESVMRG*GLQIIW*RCGYIMHCNGEIGFSSTSS 627
TLEPE +MRG*GLQIIW*RCGY MHCNGEIGFSSTSS
Sbjct: 203 TLEPEILMRG*GLQIIW*RCGYTMHCNGEIGFSSTSS 93
Score = 80.3 bits (169), Expect(2) = 3e-022
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = -2 / -2
Query: 736 P*SLRA*CVDRDYR*SGSAVVI*CIATERLDSHQLPQLL 620
P*SLR+*CVDRDYR*SGSAVVI CIATERLDSHQLPQ +
Sbjct: 202 P*SLRS*CVDRDYR*SGSAVVIQCIATERLDSHQLPQFM 86
Score = 72.5 bits (152), Expect(2) = 5e-033
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +2 / +2
Query: 521 GRTERQIIFEDPEHSSAYCLAFRVVNPNH 607
GRTERQII EDPEHSSAYCLAFRVVNPNH
Sbjct: 2 GRTERQIILEDPEHSSAYCLAFRVVNPNH 88
Score = 62.5 bits (130), Expect(2) = 7e-030
Identities = 25/29 (86%), Positives = 25/29 (86%)
Frame = -2 / -2
Query: 607 MIGINHSKCKTIRRRVLWIFKNNLSLCSS 521
MIGINHSKCKTI RV WIFKNNL LCSS
Sbjct: 88 MIGINHSKCKTIG*RVFWIFKNNLPLCSS 2
Score = 61.6 bits (128), Expect(2) = 3e-028
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -3 / -3
Query: 606 *LGLTTLNARQYAEECSGSSKIICLSVLP 520
*LGLTTLNARQ AEECSGSS+IICLSVLP
Sbjct: 87 *LGLTTLNARQ*AEECSGSSRIICLSVLP 1
Score = 58.3 bits (121), Expect(2) = 1e-027
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = +3 / +3
Query: 522 EEQRDKLFLKIQSTLRRIVLHLEWLIPII 608
EEQR KLFLKIQ+TL+ IVLHLEWLIPI+
Sbjct: 3 EEQRGKLFLKIQNTLQPIVLHLEWLIPIM 89
Score = 46.0 bits (94), Expect(2) = 3e-022
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -1 / -1
Query: 605 DWD*PL*MQDNTPKSALDLQK*FVS 531
DWD*PL*MQDN KS LDLQ+*F S
Sbjct: 86 DWD*PL*MQDNRLKSVLDLQE*FAS 12
>gb|CL184321.1|CL184321 104_397_10898775_114_32360_056 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898775, DNA
sequence
Length = 656
Score = 142 bits (305), Expect = 5e-033
Identities = 56/60 (93%), Positives = 56/60 (93%)
Frame = +1 / -1
Query: 1 QREWTDKYSPILVA*TLQELPVKDTNSWPKVSCYW*QRGAE*YTYFRKEEYHCYFCRLC* 180
QREWTDKYSPILVA*TLQELPVKD NSWPKVSCYW*QRGAE*YTYFRKE HCY CRLC*
Sbjct: 182 QREWTDKYSPILVA*TLQELPVKDINSWPKVSCYW*QRGAE*YTYFRKEANHCYLCRLC* 3
Score = 142 bits (304), Expect = 7e-033
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +2 / -2
Query: 2 RENGLTNIHQFSWPEHCKNYLSRILTLGPRSPAIGNREERSNTPISGRKNIIVISVDSVN 181
RENGLTNIH+FSWPEHCKNYLSRILTLGPRSPAIGNREERSNTPISGR+ IIVISVDSVN
Sbjct: 181 RENGLTNIHRFSWPEHCKNYLSRILTLGPRSPAIGNREERSNTPISGRRQIIVISVDSVN 2
Score = 131 bits (281), Expect = 1e-029
Identities = 56/60 (93%), Positives = 58/60 (96%)
Frame = -2 / +2
Query: 181 VNRVYRNNNDILPS*NRCITPLLSVTNSRRPWAKS*YP*QVILAMFRPRELVNICQSILS 2
VNRVYR+NND+ PS*NRCITPLLSVTNSRRPWAKS*YP*QVILAMFRPRE VNICQSILS
Sbjct: 2 VNRVYRDNNDLPPS*NRCITPLLSVTNSRRPWAKS*YP*QVILAMFRPRESVNICQSILS 181
Score = 130 bits (279), Expect = 2e-029
Identities = 56/60 (93%), Positives = 60/60 (100%)
Frame = -1 / +1
Query: 182 C*QSLQK*Q*YSSFLK*VYYSAPLCYQ*QETLGQELVSLTGNSCNVQATRIGEYLSVHSL 3
C*QSLQ+*Q*++SFLK*VYYSAPLCYQ*QETLGQEL+SLTGNSCNVQATRIGEYLSVHSL
Sbjct: 1 C*QSLQR*Q*FASFLK*VYYSAPLCYQ*QETLGQELISLTGNSCNVQATRIGEYLSVHSL 180
Score = 125 bits (267), Expect = 9e-028
Identities = 56/60 (93%), Positives = 57/60 (95%)
Frame = -3 / +3
Query: 180 LTESTEITMIFFLPEIGVLLRSSLLPIAGDLGPRVSILDR*FLQCSGHENW*IFVSPFSL 1
LTESTEITMI LPEIGVLLRSSLLPIAGDLGPRV+ILDR*FLQCSGHEN *IFVSPFSL
Sbjct: 3 LTESTEITMICLLPEIGVLLRSSLLPIAGDLGPRVNILDR*FLQCSGHENR*IFVSPFSL 182
>gb|BG488446.1|BG488446 RHIZ2_63_G11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 538
Score = 111 bits (236), Expect(2) = 9e-029
Identities = 47/83 (56%), Positives = 62/83 (74%)
Frame = +2 / +1
Query: 143 RKNIIVISVDSVNKEGLVRIIRNAIEVIHKENMSGSTGFVLSTSLTISEIHSLLLSGGML 322
RK+IIVI+VDSV V++I++ E E +GS GFVLST+ ISEIH+LL+SGG+
Sbjct: 211 RKHIIVIAVDSVQDADFVQVIKSIFEASSNERSNGSVGFVLSTARAISEIHALLISGGIE 390
Query: 323 PTDFDAFICNSGSNIYYPSHSRE 391
+DFDAFICNSGS++ YPS + E
Sbjct: 391 ASDFDAFICNSGSDLCYPSSNSE 459
Score = 37.3 bits (75), Expect(2) = 9e-029
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2 / +1
Query: 368 YYPSHSRETSNNSKITFALDQNHQSHIEYRWGG 466
Y S+S + + +++ F +D ++ S IEYRWGG
Sbjct: 439 YPSSNSEDMLSPAELPFMIDLDYHSQIEYRWGG 537
>gb|BG050643.1|BG050643 FM1_70_H01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 461
Score = 128 bits (274), Expect = 1e-028
Identities = 52/57 (91%), Positives = 55/57 (96%)
Frame = +2 / +2
Query: 566 SAYCLAFRVVNPNHLPPLKELRKLMRIQSLRCNALYNHSATRLSVVPIHASRSQALR 736
S YCLAFRVVNPNHLPPLKEL+KLMRIQSLRC+ALYNH ATRLSV+PIHASRSQALR
Sbjct: 2 STYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPIHASRSQALR 172
>gb|CW078961.1|CW078961 104_397_10898775_114_32380_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898775, DNA
sequence
Length = 683
Score = 87.7 bits (185), Expect(2) = 4e-022
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +2 / -3
Query: 2 RENGLTNIHQFSWPEHCKNYLSRILTLGPRSPAI 103
RENGLTNIH+FSWPEHCKNYLSRILTLGPRSPAI
Sbjct: 177 RENGLTNIHRFSWPEHCKNYLSRILTLGPRSPAI 76
Score = 84.5 bits (178), Expect(3) = 1e-021
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +1 / -2
Query: 1 QREWTDKYSPILVA*TLQELPVKDTNSWPKVSCY 102
QREWTDKYSPILVA*TLQELPVKD NSWPKVSCY
Sbjct: 178 QREWTDKYSPILVA*TLQELPVKDINSWPKVSCY 77
Score = 38.2 bits (77), Expect(2) = 4e-022
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2 / -2
Query: 86 PRSPAIGNREERSNTPISGRKNIIV 160
P+ NREERSNTPISGR+ I++
Sbjct: 94 PKVSCYCNREERSNTPISGRRQIML 20
Score = 35.4 bits (71), Expect(3) = 1e-021
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3 / -3
Query: 105 VTERSGVIHLFQEG 146
VTERSGVIHLFQEG
Sbjct: 75 VTERSGVIHLFQEG 34
Score = 22.1 bits (42), Expect(3) = 1e-021
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +1 / -3
Query: 136 FRKEEYHCYFCRLC 177
F++ CY CR+C
Sbjct: 45 FQEGGKSCYLCRIC 4
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 872,145,830
Number of Sequences: 832831
Number of extensions: 11949552
Number of successful extensions: 61842
Number of sequences better than 1.0e-020: 10
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 22693413262
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)