TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404858.2.1
(958 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW182784.1|CW182784 104_598_11164264_116_36670_058 Sorgh... 330 1e-089
gb|CN138418.1|CN138418 OX1_63_E01.g1_A002 Oxidatively-stres... 327 2e-088
gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation... 240 8e-077
gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorgh... 257 2e-069
gb|BG412301.1|BG412301 OV2_40_C07.b1_A002 Ovary 2 (OV2) Sor... 191 1e-047
gb|CW199665.1|CW199665 104_624_11183633_148_36850_065 Sorgh... 70 1e-036
gb|CW338135.1|CW338135 104_838_11484582_116_36125_025 Sorgh... 52 4e-034
gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sor... 63 5e-031
gb|CW182785.1|CW182785 104_598_11164264_148_36669_058 Sorgh... 134 2e-030
gb|CW199664.1|CW199664 104_624_11183633_116_37058_065 Sorgh... 70 7e-026
gb|CW158106.1|CW158106 104_561_11147878_116_36390_083 Sorgh... 118 1e-025
gb|CW325782.1|CW325782 104_820_11477874_116_35926_065 Sorgh... 54 2e-024
gb|CW135684.1|CW135684 104_520_11117978_116_34839_009 Sorgh... 53 5e-024
gb|BG054069.1|BG054069 OV2_3_A08.g1_A002 Ovary 2 (OV2) Sorg... 69 7e-024
gb|CW111876.1|CW111876 104_485_11104574_116_34538_055 Sorgh... 89 2e-023
gb|CW224533.1|CW224533 104_660_11203494_148_37445_017 Sorgh... 51 4e-023
gb|CX607235.1|CX607235 ANR1_7_A06.g1_A002 Anaerobic roots S... 51 2e-022
gb|CN149285.1|CN149285 WOUND1_61_G04.g1_A002 Wounded leaves... 51 2e-022
gb|CW260769.1|CW260769 104_727_11229143_116_35195_086 Sorgh... 59 2e-022
gb|CX607145.1|CX607145 ANR1_7_A06.b1_A002 Anaerobic roots S... 51 2e-021
gb|CW222650.1|CW222650 104_658_11202489_148_37178_043 Sorgh... 51 2e-021
gb|CN148035.1|CN148035 WOUND1_53_G05.g1_A002 Wounded leaves... 51 2e-021
gb|BI141571.1|BI141571 IP1_54_B04.b1_A002 Immature pannicle... 103 5e-021
gb|CW338136.1|CW338136 104_838_11484582_148_36124_025 Sorgh... 53 6e-021
gb|CW265100.1|CW265100 104_734_11231675_148_35261_044 Sorgh... 62 9e-021
>gb|CW182784.1|CW182784 104_598_11164264_116_36670_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164264, DNA
sequence
Length = 602
Score = 330 bits (716), Expect = 1e-089
Identities = 140/183 (76%), Positives = 147/183 (80%)
Frame = +1 / -2
Query: 1 RVCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGPACYSVRESGK 180
RVCAD+GAGAASY HCDVTSE TFGALDIMFNNAGVSGPACYSVR+SGK
Sbjct: 550 RVCADVGAGAASYFHCDVTSEDDVAAAVDHAVATFGALDIMFNNAGVSGPACYSVRDSGK 371
Query: 181 ADFERVLAVNLVGPFLGTKHAARVMVPSRRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMV 360
ADFERVLAVNLVGPFLGTKHAARVMVP+RRGGCII CAKRA+V
Sbjct: 370 ADFERVLAVNLVGPFLGTKHAARVMVPARRGGCIIGTSSVAAAVTGASSYAYACAKRALV 191
Query: 361 TLTENAAAELGQHGIRVNCVSPAGVATPLTMRYMGLEAEALEQAMEGMANLKGVGALRVH 540
LTENAAAELG+HGIRVNCVSPAGVATPLTMRYMGLEAEA EQAME ++NLKGVGALR
Sbjct: 190 ALTENAAAELGRHGIRVNCVSPAGVATPLTMRYMGLEAEAFEQAMEAISNLKGVGALRAD 11
Query: 541 DVA 549
DVA
Sbjct: 10 DVA 2
Score = 323 bits (700), Expect = 2e-087
Identities = 142/171 (83%), Positives = 144/171 (84%)
Frame = -3 / +3
Query: 515 LRLAMPSIACSNASASRPMYLMVSGVATPAGETQFTRMPCWPSSAAAFSVRVTIARFAHA 336
LR M SIACSNASASRPMYLMVSGVATPAGETQFTRMPC PSSAAAFSV T ARFAHA
Sbjct: 36 LRFDMASIACSNASASRPMYLMVSGVATPAGETQFTRMPCRPSSAAAFSVSATSARFAHA 215
Query: 335 YAYDDTPVTAAATLDVPMMQPPRREGTITRAACLVPRNGPTRFTASTRSKSALPLSRTL* 156
YAY+D PVTAAATLDVPMMQPPRR GTITRAACLVPRNGPTRFTASTRSKSALPLSRTL*
Sbjct: 216 YAYEDAPVTAAATLDVPMMQPPRRAGTITRAACLVPRNGPTRFTASTRSKSALPLSRTL* 395
Query: 155 HAGPLTPALLNMMSSAPNVXXXXXXXXXXXXXXXXSQWT*LAAPAPRSAQT 3
HAGPLTPALLNM+SSAPNV SQW *LAAPAP SAQT
Sbjct: 396 HAGPLTPALLNMISSAPNVATAWSTAAATSSSLVTSQWK*LAAPAPTSAQT 548
Score = 205 bits (442), Expect(2) = 3e-054
Identities = 88/115 (76%), Positives = 92/115 (80%)
Frame = +3 / -1
Query: 111 AGHHVQQRGRQRAGVLQRPGERQG*LRARAGRESGGPVPRHQARGAGDGALAPRWLHHRD 290
AG+HVQQ RQRAGVLQRPG+RQG*LRARAGRE GGPVPRHQARGAGDG APR LHHRD
Sbjct: 440 AGYHVQQCWRQRAGVLQRPGQRQG*LRARAGREPGGPVPRHQARGAGDGTRAPRRLHHRD 261
Query: 291 VERGGGSDWXXXXXXXXXEARDGDSDGERGCGARPARHSRELRLPRGGRHAADHE 455
V+RGGG D EAR +DGER GARPARH RELRLPRGGRHAADHE
Sbjct: 260 VQRGGGRDRRVLVRVRVREARARGADGERRGGARPARHPRELRLPRGGRHAADHE 96
Score = 117 bits (251), Expect(2) = 7e-049
Identities = 50/62 (80%), Positives = 53/62 (85%)
Frame = -2 / +2
Query: 549 GDVVHPQCAHALEVGHALHCLLQRLRLEAHVPHGQRRGDPRGGDAVHANAVLAELRSRVL 370
GDVV Q AHALEV + LHCLL+RLR EAHVPHGQRRGDPRGGDAVHA+AV AELR VL
Sbjct: 2 GDVVRSQGAHALEV*YGLHCLLERLRFEAHVPHGQRRGDPRGGDAVHADAVPAELRRGVL 181
Query: 369 RQ 364
RQ
Sbjct: 182 RQ 187
Score = 98.2 bits (208), Expect(2) = 7e-049
Identities = 40/62 (64%), Positives = 44/62 (70%)
Frame = -2 / +2
Query: 288 PYDAATAARGHHHPRRVLGAEERAHQIHGQHALEVSXXXXXXXXXXXXXXXXXVEHDVQR 109
PYDAA AARG+HHPRRVLGAEERAHQ+HGQHALEVS VEHD+QR
Sbjct: 263 PYDAAAAARGYHHPRRVLGAEERAHQVHGQHALEVSLAAVPDAVARRPADASIVEHDIQR 442
Query: 108 AE 103
+E
Sbjct: 443 SE 448
Score = 82.6 bits (174), Expect(2) = 2e-025
Identities = 34/48 (70%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 283 *CSHXXXXXXXXXXXAWCRGTGPPDSRPARARSQPCRSPGRCSTPAR* 140
*CS AWCRGTGPP SRPARARSQPCR PGRCSTPAR*
Sbjct: 268 *CSRRGARVPSPAPRAWCRGTGPPGSRPARARSQPCRCPGRCSTPAR* 411
Score = 54.7 bits (113), Expect(2) = 2e-025
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = -1 / +1
Query: 454 SWSAAWRPPRGRRSSRECRAG 392
SWSAAWRPPRGRRSSR CRAG
Sbjct: 97 SWSAAWRPPRGRRSSRGCRAG 159
Score = 28.6 bits (56), Expect(2) = 3e-054
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / -3
Query: 509 TSRAWAHCGCTTSP 550
TSRAWA C TTSP
Sbjct: 42 TSRAWAPCERTTSP 1
>gb|CN138418.1|CN138418 OX1_63_E01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_63_E01_A002 5', mRNA sequence
Length = 709
Score = 327 bits (708), Expect = 2e-088
Identities = 138/181 (76%), Positives = 145/181 (80%)
Frame = +1 / +3
Query: 1 RVCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGPACYSVRESGK 180
RVCAD+GAGAASY HCDVTSE TFGALDIMFNNAGVSGPACYSVR+SGK
Sbjct: 165 RVCADVGAGAASYFHCDVTSEDDVAAAVDHAVATFGALDIMFNNAGVSGPACYSVRDSGK 344
Query: 181 ADFERVLAVNLVGPFLGTKHAARVMVPSRRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMV 360
ADFERVLAVNLVGPFLGTKHAARVMVP+RRGGCII CAKRA+V
Sbjct: 345 ADFERVLAVNLVGPFLGTKHAARVMVPARRGGCIIGTSSVAAAVTGASSYAYACAKRALV 524
Query: 361 TLTENAAAELGQHGIRVNCVSPAGVATPLTMRYMGLEAEALEQAMEGMANLKGVGALRVH 540
LTENAAAELG+HGIRVNCVSPAGVATPLTMRYMGLEAEA EQAME ++NLKGVGALR
Sbjct: 525 ALTENAAAELGRHGIRVNCVSPAGVATPLTMRYMGLEAEAFEQAMEAISNLKGVGALRAD 704
Query: 541 D 543
D
Sbjct: 705 D 707
Score = 323 bits (700), Expect = 2e-087
Identities = 142/171 (83%), Positives = 144/171 (84%)
Frame = -3 / -1
Query: 515 LRLAMPSIACSNASASRPMYLMVSGVATPAGETQFTRMPCWPSSAAAFSVRVTIARFAHA 336
LR M SIACSNASASRPMYLMVSGVATPAGETQFTRMPC PSSAAAFSV T ARFAHA
Sbjct: 679 LRFDMASIACSNASASRPMYLMVSGVATPAGETQFTRMPCRPSSAAAFSVSATSARFAHA 500
Query: 335 YAYDDTPVTAAATLDVPMMQPPRREGTITRAACLVPRNGPTRFTASTRSKSALPLSRTL* 156
YAY+D PVTAAATLDVPMMQPPRR GTITRAACLVPRNGPTRFTASTRSKSALPLSRTL*
Sbjct: 499 YAYEDAPVTAAATLDVPMMQPPRRAGTITRAACLVPRNGPTRFTASTRSKSALPLSRTL* 320
Query: 155 HAGPLTPALLNMMSSAPNVXXXXXXXXXXXXXXXXSQWT*LAAPAPRSAQT 3
HAGPLTPALLNM+SSAPNV SQW *LAAPAP SAQT
Sbjct: 319 HAGPLTPALLNMISSAPNVATAWSTAAATSSSLVTSQWK*LAAPAPTSAQT 167
Score = 205 bits (442), Expect(2) = 1e-052
Identities = 88/115 (76%), Positives = 92/115 (80%)
Frame = +3 / +2
Query: 111 AGHHVQQRGRQRAGVLQRPGERQG*LRARAGRESGGPVPRHQARGAGDGALAPRWLHHRD 290
AG+HVQQ RQRAGVLQRPG+RQG*LRARAGRE GGPVPRHQARGAGDG APR LHHRD
Sbjct: 275 AGYHVQQCWRQRAGVLQRPGQRQG*LRARAGREPGGPVPRHQARGAGDGTRAPRRLHHRD 454
Query: 291 VERGGGSDWXXXXXXXXXEARDGDSDGERGCGARPARHSRELRLPRGGRHAADHE 455
V+RGGG D EAR +DGER GARPARH RELRLPRGGRHAADHE
Sbjct: 455 VQRGGGRDRRVLVRVRVREARARGADGERRGGARPARHPRELRLPRGGRHAADHE 619
Score = 112 bits (239), Expect(2) = 3e-047
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2 / -3
Query: 543 VVHPQCAHALEVGHALHCLLQRLRLEAHVPHGQRRGDPRGGDAVHANAVLAELRSRVLRQ 364
VV Q AHALEV + LHCLL+RLR EAHVPHGQRRGDPRGGDAVHA+AV AELR VLRQ
Sbjct: 707 VVRSQGAHALEV*YGLHCLLERLRFEAHVPHGQRRGDPRGGDAVHADAVPAELRRGVLRQ 528
Score = 98.2 bits (208), Expect(2) = 3e-047
Identities = 40/62 (64%), Positives = 44/62 (70%)
Frame = -2 / -3
Query: 288 PYDAATAARGHHHPRRVLGAEERAHQIHGQHALEVSXXXXXXXXXXXXXXXXXVEHDVQR 109
PYDAA AARG+HHPRRVLGAEERAHQ+HGQHALEVS VEHD+QR
Sbjct: 452 PYDAAAAARGYHHPRRVLGAEERAHQVHGQHALEVSLAAVPDAVARRPADASIVEHDIQR 273
Query: 108 AE 103
+E
Sbjct: 272 SE 267
Score = 82.6 bits (174), Expect(2) = 2e-025
Identities = 34/48 (70%), Positives = 34/48 (70%)
Frame = -1 / -2
Query: 283 *CSHXXXXXXXXXXXAWCRGTGPPDSRPARARSQPCRSPGRCSTPAR* 140
*CS AWCRGTGPP SRPARARSQPCR PGRCSTPAR*
Sbjct: 447 *CSRRGARVPSPAPRAWCRGTGPPGSRPARARSQPCRCPGRCSTPAR* 304
Score = 54.7 bits (113), Expect(2) = 2e-025
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = -1 / -2
Query: 454 SWSAAWRPPRGRRSSRECRAG 392
SWSAAWRPPRGRRSSR CRAG
Sbjct: 618 SWSAAWRPPRGRRSSRGCRAG 556
Score = 23.5 bits (45), Expect(2) = 1e-052
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2 / +1
Query: 509 TSRAWAHCGCTT 544
TSRAWA C TT
Sbjct: 673 TSRAWAPCERTT 708
>gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293j08, DNA
sequence
Length = 616
Score = 240 bits (518), Expect(2) = 8e-077
Identities = 100/164 (60%), Positives = 113/164 (68%)
Frame = +1 / -1
Query: 31 ASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGPACYSVRESGKADFERVLAVN 210
A YV CDVT E FGALDIMFN AG+ +C+S+RES K DFERV++VN
Sbjct: 613 ARYVQCDVTVESDVAAAVDHSEARFGALDIMFNTAGIGDASCHSIRESTKEDFERVISVN 434
Query: 211 LVGPFLGTKHAARVMVPSRRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAEL 390
LVGPF+GTKHAARVMVP+ RGGCII CAKR +V LTENA+AEL
Sbjct: 433 LVGPFMGTKHAARVMVPAGRGGCIIGTSSLASAVAGAASHAYTCAKRGLVALTENASAEL 254
Query: 391 GQHGIRVNCVSPAGVATPLTMRYMGLEAEALEQAMEGMANLKGV 522
G+HGIRVNCVSPA ATPL Y+GLE EA EQAME +ANLKGV
Sbjct: 253 GRHGIRVNCVSPAAAATPLATAYVGLEGEAFEQAMEAVANLKGV 122
Score = 192 bits (413), Expect(2) = 3e-060
Identities = 90/138 (65%), Positives = 96/138 (69%)
Frame = -3 / +3
Query: 515 LRLAMPSIACSNASASRPMYLMVSGVATPAGETQFTRMPCWPSSAAAFSVRVTIARFAHA 336
LRLA S+ACSNAS S P Y + SGVA AGETQ TR+P PSSA AFSV T R AH
Sbjct: 129 LRLATASMACSNASPSSPTYAVASGVAAAAGETQLTRIPWRPSSAEAFSVSATRPRLAHV 308
Query: 335 YAYDDTPVTAAATLDVPMMQPPRREGTITRAACLVPRNGPTRFTASTRSKSALPLSRTL* 156
A D P TA A LDVPMM PPR GT+TRAACLVP NGPTR T TRSKS+L LSR L
Sbjct: 309 *ACDAAPATAEARLDVPMMHPPRPAGTMTRAACLVPMNGPTRLTEITRSKSSLVLSRMLW 488
Query: 155 HAGPLTPALLNMMSSAPN 102
PA+LNMMSSAPN
Sbjct: 489 QDASPMPAVLNMMSSAPN 542
Score = 82.6 bits (174), Expect(3) = 4e-022
Identities = 36/62 (58%), Positives = 41/62 (66%)
Frame = +3 / -3
Query: 111 AGHHVQQRGRQRAGVLQRPGERQG*LRARAGRESGGPVPRHQARGAGDGALAPRWLHHRD 290
AGHHVQ RG +R + Q PGE QG LRAR R+ G V HQARGAG G PR +HHR
Sbjct: 533 AGHHVQHRGHRRRVLPQHPGEHQGGLRARDLRQPRGTVHGHQARGAGHGPRGPRRMHHRH 354
Query: 291 VE 296
V+
Sbjct: 353 VQ 348
Score = 69.3 bits (145), Expect(2) = 8e-077
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +1 / -1
Query: 529 LRVHDVAAAVRFLASDDARYISGHNLFVDGGISVANPS 642
LRV D+AAAV ++A DDARYISGHNL +DGG S+ NPS
Sbjct: 118 LRVADIAAAVLYIARDDARYISGHNLLLDGGFSIVNPS 5
Score = 64.3 bits (134), Expect(4) = 2e-029
Identities = 31/71 (43%), Positives = 41/71 (57%)
Frame = -2 / +2
Query: 576 IAGQEAHGGGDVVHPQCAHALEVGHALHCLLQRLRLEAHVPHGQRRGDPRGGDAVHANAV 397
+ + GG V A+ALEV LH LL+RL L++HV G+RRG G DAV + V
Sbjct: 68 VVSGDVQHGGGDVRHPQANALEVSDGLHGLLERLPLQSHVRRGERRGSRGGRDAVDPDPV 247
Query: 396 LAELRSRVLRQ 364
+LR VLR+
Sbjct: 248 ATQLRGGVLRE 280
Score = 62.0 bits (129), Expect(2) = 3e-060
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = -2 / +2
Query: 642 GWIRDGDPAVDEQVVAADVPRVIAGQEAHGGGDVVHPQ 529
G + DG+ V+EQVV ADVPRV++G HGGGDV HPQ
Sbjct: 5 GRVDDGEAPVEEQVVPADVPRVVSGDVQHGGGDVRHPQ 118
Score = 60.2 bits (125), Expect(4) = 2e-029
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = -2 / +2
Query: 282 DAATAARGHHHPRRVLGAEERAHQIHGQHALEV 184
DA+ AARG H PRRVLGA ER+H++ G HALEV
Sbjct: 362 DASAAARGDHDPRRVLGAHERSHEVDGDHALEV 460
Score = 39.1 bits (79), Expect(4) = 2e-029
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -3 / +3
Query: 641 DGFATEIPPSTNRLWPLMYLASSLA 567
DG E PPS +RL PLMY ASSLA
Sbjct: 6 DGLTMEKPPSRSRLCPLMYRASSLA 80
Score = 32.7 bits (65), Expect(3) = 4e-022
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3 / -3
Query: 345 EARDGDSDGERGCGARPARHSRELRLPRGGRHAADH 452
+AR + GER GA R +LRL R G HAA H
Sbjct: 299 QARPRGAHGERLRGAGSPRDPGQLRLARRGCHAARH 192
Score = 28.6 bits (56), Expect(3) = 4e-022
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2 / -2
Query: 530 CGCTTSPPPCASWP 571
CG TSPPPC + P
Sbjct: 117 CGWRTSPPPCCTSP 76
Score = 22.1 bits (42), Expect(4) = 2e-029
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2 / +2
Query: 126 EHDVQRAE 103
EHDVQRAE
Sbjct: 518 EHDVQRAE 541
>gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149046, DNA
sequence
Length = 686
Score = 257 bits (555), Expect = 2e-067
Identities = 111/182 (60%), Positives = 122/182 (67%)
Frame = +1 / -3
Query: 31 ASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGPACYSVRESGKADFERVLAVN 210
ASYVHCDVT E FGALDIMFNNAG+ G AC+S+RES K DFERVL+VN
Sbjct: 660 ASYVHCDVTVEADVAAAVDHAVARFGALDIMFNNAGIGGAACHSIRESTKEDFERVLSVN 481
Query: 211 LVGPFLGTKHAARVMVPSRRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAEL 390
LVGPFLGTKHAARVMVP+ RGGCII CAKR +V LTENAAAEL
Sbjct: 480 LVGPFLGTKHAARVMVPAGRGGCIIGTSSLASAVAGAASHAYTCAKRGLVALTENAAAEL 301
Query: 391 GQHGIRVNCVSPAGVATPLTMRYMGLEAEALEQAMEGMANLKGVGALRVHDVAAAVRFLA 570
G+HGIRVNCVSPA ATPL Y+GLE EA EQAME +ANLKGV AA + +
Sbjct: 300 GRHGIRVNCVSPAAAATPLATAYVGLEGEAFEQAMEAVANLKGVRLRVADIAAAVLYLAS 121
Query: 571 SD 576
D
Sbjct: 120 DD 115
Score = 215 bits (465), Expect(2) = 2e-069
Identities = 104/169 (61%), Positives = 111/169 (65%)
Frame = -3 / +2
Query: 515 LRLAMPSIACSNASASRPMYLMVSGVATPAGETQFTRMPCWPSSAAAFSVRVTIARFAHA 336
LRLA S+ACSNAS S P Y + SGVA AGETQ TR+P PSSAAAFSV T R AH
Sbjct: 176 LRLATASMACSNASPSSPTYAVASGVAAAAGETQLTRIPWRPSSAAAFSVSATRPRLAHV 355
Query: 335 YAYDDTPVTAAATLDVPMMQPPRREGTITRAACLVPRNGPTRFTASTRSKSALPLSRTL* 156
A D P TA A LDVPMMQPPR GT+TRAACLVPRNGPTR T STRSKS+L LSR L
Sbjct: 356 *ACDAAPATAEARLDVPMMQPPRPAGTMTRAACLVPRNGPTRLTESTRSKSSLVLSRMLW 535
Query: 155 HAGPLTPALLNMMSSAPNVXXXXXXXXXXXXXXXXSQWT*LAAPAPRSA 9
A P PALLNMMSSAPN SQ T*LA + S+
Sbjct: 536 QAAPPMPALLNMMSSAPNRATAWSTAAATSASTVTSQCT*LATASAPSS 682
Score = 96.8 bits (205), Expect(3) = 2e-041
Identities = 41/62 (66%), Positives = 45/62 (72%)
Frame = +3 / -2
Query: 111 AGHHVQQRGRQRAGVLQRPGERQG*LRARAGRESGGPVPRHQARGAGDGALAPRWLHHRD 290
AGHHVQQRG +R G+ Q PGE QG LRARA R+ G VP HQARGAG G PR LHHR
Sbjct: 580 AGHHVQQRGHRRRGLPQHPGEHQGGLRARALRQPRGTVPGHQARGAGHGPRGPRRLHHRH 401
Query: 291 VE 296
V+
Sbjct: 400 VQ 395
Score = 79.0 bits (166), Expect(3) = 2e-041
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +1 / -3
Query: 529 LRVHDVAAAVRFLASDDARYISGHNLFVDGGISVANPSTGTSKD*S 666
LRV D+AAAV +LASDDARYISGHNL +DGG S+ NPS G KD*+
Sbjct: 165 LRVADIAAAVLYLASDDARYISGHNLLLDGGFSIVNPSFGIFKD*A 28
Score = 76.2 bits (160), Expect(3) = 2e-036
Identities = 33/60 (55%), Positives = 38/60 (63%)
Frame = -2 / +1
Query: 282 DAATAARGHHHPRRVLGAEERAHQIHGQHALEVSXXXXXXXXXXXXXXXXXVEHDVQRAE 103
DAA AARG H PRRVLGA+ER+H++ G+HALEV VEHDVQRAE
Sbjct: 409 DAAAAARGDHDPRRVLGAQERSHEVDGEHALEVLLGALPDAVASRAADARVVEHDVQRAE 588
Score = 68.9 bits (144), Expect(2) = 2e-069
Identities = 28/46 (60%), Positives = 34/46 (73%)
Frame = -2 / +1
Query: 666 TSIFGRSSGWIRDGDPAVDEQVVAADVPRVIAGQEAHGGGDVVHPQ 529
+SIF G + DG+ V+EQVV ADVPRV+AG+ HGGGDV HPQ
Sbjct: 28 SSIFEDPKGRVDDGEAPVEEQVVPADVPRVVAGEVEHGGGDVRHPQ 165
Score = 65.7 bits (137), Expect(3) = 2e-036
Identities = 32/71 (45%), Positives = 41/71 (57%)
Frame = -2 / +1
Query: 576 IAGQEAHGGGDVVHPQCAHALEVGHALHCLLQRLRLEAHVPHGQRRGDPRGGDAVHANAV 397
+ E GG V A+ALEV LH LL+RL L++HV G+RRG G DAV + V
Sbjct: 115 VVAGEVEHGGGDVRHPQANALEVSDGLHGLLERLPLQSHVRRGERRGSRGGRDAVDPDPV 294
Query: 396 LAELRSRVLRQ 364
+LR VLR+
Sbjct: 295 ATQLRGGVLRE 327
Score = 50.6 bits (104), Expect(3) = 2e-036
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = -3 / +2
Query: 662 QSLDVPVDGFATEIPPSTNRLWPLMYLASSLAR 564
QSL +P DG E PPS +RL PLMY ASSLAR
Sbjct: 32 QSLKIPKDGLTMEKPPSRSRLCPLMYRASSLAR 130
Score = 33.6 bits (67), Expect(3) = 2e-041
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3 / -2
Query: 345 EARDGDSDGERGCGARPARHSRELRLPRGGRHAADH 452
+AR + GER GA R +LRL R G HAA H
Sbjct: 346 QARPRGAHGERRRGAGSPRDPGQLRLARRGCHAARH 239
>gb|BG412301.1|BG412301 OV2_40_C07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 485
Score = 191 bits (412), Expect = 1e-047
Identities = 79/95 (83%), Positives = 82/95 (86%)
Frame = +1 / +1
Query: 1 RVCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGPACYSVRESGK 180
RVCAD+GAGAASY HCDVTSE TFGALDIMFNNAGVSGPACYSVR+SGK
Sbjct: 175 RVCADVGAGAASYFHCDVTSEDDVAAAVDHAVATFGALDIMFNNAGVSGPACYSVRDSGK 354
Query: 181 ADFERVLAVNLVGPFLGTKHAARVMVPSRRGGCII 285
ADFERVLAVNLVGPFLGTKHAARVMVP+RRGGCII
Sbjct: 355 ADFERVLAVNLVGPFLGTKHAARVMVPARRGGCII 459
Score = 188 bits (405), Expect = 1e-046
Identities = 83/103 (80%), Positives = 84/103 (81%)
Frame = -3 / -1
Query: 311 TAAATLDVPMMQPPRREGTITRAACLVPRNGPTRFTASTRSKSALPLSRTL*HAGPLTPA 132
TAAATLDVPMMQPPRR GTITRAACLVPRNGPTRFTASTRSKSALPLSRTL*HAGPLTPA
Sbjct: 485 TAAATLDVPMMQPPRRAGTITRAACLVPRNGPTRFTASTRSKSALPLSRTL*HAGPLTPA 306
Query: 131 LLNMMSSAPNVXXXXXXXXXXXXXXXXSQWT*LAAPAPRSAQT 3
LLNM+SSAPNV SQW *LAAPAP SAQT
Sbjct: 305 LLNMISSAPNVATAWSTAAATSSSLVTSQWK*LAAPAPTSAQT 177
Score = 138 bits (297), Expect = 9e-032
Identities = 57/66 (86%), Positives = 60/66 (90%)
Frame = +3 / +3
Query: 111 AGHHVQQRGRQRAGVLQRPGERQG*LRARAGRESGGPVPRHQARGAGDGALAPRWLHHRD 290
AG+HVQQ RQRAGVLQRPG+RQG*LRARAGRE GGPVPRHQARGAGDG APR LHHRD
Sbjct: 285 AGYHVQQCWRQRAGVLQRPGQRQG*LRARAGREPGGPVPRHQARGAGDGTRAPRRLHHRD 464
Query: 291 VERGGG 308
V+RGGG
Sbjct: 465 VQRGGG 482
>gb|CW199665.1|CW199665 104_624_11183633_148_36850_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183633, DNA
sequence
Length = 712
Score = 70.3 bits (147), Expect(4) = 1e-036
Identities = 30/72 (41%), Positives = 39/72 (54%)
Frame = +1 / -3
Query: 271 GGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATPLT 450
GG I+ +K A++ L AA ELG+HG+RVNCVSP GVATPL+
Sbjct: 431 GGAIVCTASVASLQGGFGPASYTASKHALLGLVRAAAGELGRHGVRVNCVSPGGVATPLS 252
Query: 451 MRYMGLEAEALE 486
MG+ + LE
Sbjct: 251 CALMGVGPQELE 216
Score = 57.9 bits (120), Expect(4) = 1e-036
Identities = 27/52 (51%), Positives = 32/52 (61%)
Frame = +1 / -3
Query: 487 QAMEGMANLKGVGALRVHDVAAAVRFLASDDARYISGHNLFVDGGISVANPS 642
+AM N+ LR DVA A FLASD A +ISGHNL VDG I+ NP+
Sbjct: 218 EAMTVPHNVLQGKVLRADDVAEAALFLASDQAAFISGHNLVVDGAITAVNPA 63
Score = 42.8 bits (87), Expect(4) = 1e-036
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1 / -3
Query: 4 VCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGP 150
V A +G G +Y CDVT E LD+M +NAGV P
Sbjct: 704 VAASVGPGRCAYARCDVTDEAQVEATVARVVAAHARLDVMMSNAGVLLP 558
Score = 40.0 bits (81), Expect(4) = 1e-036
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +1 / -3
Query: 160 SVRESGKADFERVLAVNLVGPFLGTKHAARVMVPSRRGG 276
SV + A+ +RV+AVN G KHAAR MV S GG
Sbjct: 551 SVMDMDLAELDRVMAVNFRGAAACVKHAARAMVASGSGG 435
>gb|CW338135.1|CW338135 104_838_11484582_116_36125_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484582, DNA
sequence
Length = 727
Score = 52.4 bits (108), Expect(4) = 4e-034
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = +1 / -3
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
RRGG II +K A+V L AAE+ + G+RVN +SP + TP
Sbjct: 458 RRGGSIICTASTTSLLGGILPPAYTASKAAVVGLVRAVAAEVARSGVRVNAISPHAIPTP 279
Query: 445 LTM 453
LTM
Sbjct: 278 LTM 270
Score = 51.9 bits (107), Expect(4) = 4e-034
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +1 / -3
Query: 529 LRVHDVAAAVRFLASDDARYISGHNLFVDGGISVA 633
L DVA A +LASD+A+Y++GHNL VDGG +V+
Sbjct: 179 LEEKDVAKAALYLASDEAKYVNGHNLLVDGGYTVS 75
Score = 50.6 bits (104), Expect(4) = 4e-034
Identities = 21/48 (43%), Positives = 24/48 (50%)
Frame = +1 / -3
Query: 4 VCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSG 147
+ A+L AA Y CDVT E G LD+MFNNAGV G
Sbjct: 719 IAAELAQDAACYTRCDVTDEAQVAAAVDLAVGLHGRLDVMFNNAGVFG 576
Score = 47.3 bits (97), Expect(4) = 4e-034
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +1 / -3
Query: 184 DFERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
DF+RV+AVN G G KHAARVM+P R G I
Sbjct: 536 DFDRVVAVNARGVLAGVKHAARVMLPRRGGSII 438
>gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 62.9 bits (131), Expect(3) = 5e-031
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = +1 / +3
Query: 127 NNAGVSGPACYSVRESGKADFERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
NNAGV+G +R A+ RVL +N+ G FLG KHAARVM+P +RG +
Sbjct: 6 NNAGVTGAKVTDIRAVDFAEVRRVLDINVHGVFLGMKHAARVMIPQKRGSIV 161
Score = 62.0 bits (129), Expect(3) = 5e-031
Identities = 30/90 (33%), Positives = 47/90 (52%)
Frame = +1 / +3
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
++ G I+ +K A+V LT++ AAELG+HG+RVNCVSP V T
Sbjct: 141 QKRGSIVSLASVASAIGGLGPHAYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTA 320
Query: 445 LTMRYMGLEAEALEQAMEGMANLKGVGALR 534
L+M ++ A A + + +A + G L+
Sbjct: 321 LSMPHLPQGARADDALTDFLAFVGGEANLK 410
Score = 49.2 bits (101), Expect(3) = 5e-031
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1 / +3
Query: 541 DVAAAVRFLASDDARYISGHNLFVDGGISVAN 636
DVA AV +LASD+ARY+S NL VDGG + N
Sbjct: 432 DVAQAVLYLASDEARYVSALNLMVDGGFTAVN 527
>gb|CW182785.1|CW182785 104_598_11164264_148_36669_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164264, DNA
sequence
Length = 704
Score = 134 bits (288), Expect = 2e-030
Identities = 56/71 (78%), Positives = 58/71 (81%)
Frame = +1 / +3
Query: 1 RVCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGPACYSVRESGK 180
RVCAD+GAGAASY HCDVTSE TFGALDIMFNNAGVSGPACYSVR+SGK
Sbjct: 492 RVCADVGAGAASYFHCDVTSEDDVAAAVDHAVATFGALDIMFNNAGVSGPACYSVRDSGK 671
Query: 181 ADFERVLAVNL 213
ADFERVLAVNL
Sbjct: 672 ADFERVLAVNL 704
Score = 111 bits (238), Expect = 1e-023
Identities = 51/70 (72%), Positives = 52/70 (74%)
Frame = -3 / -2
Query: 212 RFTASTRSKSALPLSRTL*HAGPLTPALLNMMSSAPNVXXXXXXXXXXXXXXXXSQWT*L 33
RFTASTRSKSALPLSRTL*HAGPLTPALLNM+SSAPNV SQW *L
Sbjct: 703 RFTASTRSKSALPLSRTL*HAGPLTPALLNMISSAPNVATAWSTAAATSSSLVTSQWK*L 524
Query: 32 AAPAPRSAQT 3
AAPAP SAQT
Sbjct: 523 AAPAPTSAQT 494
>gb|CW199664.1|CW199664 104_624_11183633_116_37058_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183633, DNA
sequence
Length = 504
Score = 70.3 bits (147), Expect(3) = 7e-026
Identities = 30/72 (41%), Positives = 39/72 (54%)
Frame = +1 / +1
Query: 271 GGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATPLT 450
GG I+ +K A++ L AA ELG+HG+RVNCVSP GVATPL+
Sbjct: 289 GGAIVCTASVASLQGGFGPASYTASKHALLGLVRAAAGELGRHGVRVNCVSPGGVATPLS 468
Query: 451 MRYMGLEAEALE 486
MG+ + LE
Sbjct: 469 CALMGVGPQELE 504
Score = 46.4 bits (95), Expect(3) = 7e-026
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +1 / +1
Query: 4 VCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGP 150
V A +G+G +Y CDVT E G LD+M +NAGV P
Sbjct: 16 VAASVGSGRCAYARCDVTDEAQVEATVARVVAAHGRLDVMMSNAGVLLP 162
Score = 40.0 bits (81), Expect(3) = 7e-026
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +1 / +1
Query: 160 SVRESGKADFERVLAVNLVGPFLGTKHAARVMVPSRRGG 276
SV + A+ +RV+AVN G KHAAR MV S GG
Sbjct: 169 SVMDMDLAELDRVMAVNFRGAAACVKHAARAMVASGSGG 285
>gb|CW158106.1|CW158106 104_561_11147878_116_36390_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147878, DNA
sequence
Length = 659
Score = 118 bits (252), Expect = 1e-025
Identities = 48/70 (68%), Positives = 52/70 (74%)
Frame = +1 / -1
Query: 31 ASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGPACYSVRESGKADFERVLAVN 210
ASYVHCDVT E FGALDIMFNNAG+ G AC+S+RES K DFERVL+VN
Sbjct: 212 ASYVHCDVTVEADVAAAVDHAVARFGALDIMFNNAGIGGAACHSIRESTKEDFERVLSVN 33
Query: 211 LVGPFLGTKH 240
LVGPFLGTKH
Sbjct: 32 LVGPFLGTKH 3
>gb|CW325782.1|CW325782 104_820_11477874_116_35926_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477874, DNA
sequence
Length = 613
Score = 53.8 bits (111), Expect(4) = 2e-024
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +1 / -3
Query: 445 LTMRYMGLEAEALEQAMEGMANLKGVGALRVHDVAAAVRFLASDDARYISGHNLFVDGGI 624
L + G+ E L++ +E + L+V DVA A +LASD+A++++GHNL VDGG
Sbjct: 203 LARLHPGVPDEQLKRMVETGMSELRGAVLQVEDVARAAVYLASDEAKFVTGHNLVVDGGF 24
Query: 625 SVA 633
+ +
Sbjct: 23 TAS 15
Score = 47.8 bits (98), Expect(4) = 2e-024
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1 / -3
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
R GC++ +K ++++ AA EL + G+RVN +SP +ATP
Sbjct: 398 RAAGCVLCTGSTTGMLGGLAALPYSLSKATVISVVRAAADELARSGVRVNAISPHAIATP 219
Query: 445 LTMR 456
L +R
Sbjct: 218 LLVR 207
Score = 41.4 bits (84), Expect(4) = 2e-024
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +1 / -3
Query: 181 ADFERVLAVNLVGPFLGTKHAARVMVPSRRG 273
ADF+RV+AVN KHAARVMVP G
Sbjct: 479 ADFDRVMAVNARSAVAALKHAARVMVPRAAG 387
Score = 26.3 bits (51), Expect(4) = 2e-024
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1 / -3
Query: 52 VTSEXXXXXXXXXXXXTFGALDIMFNNAGVSG 147
VT E G LD++++NAG G
Sbjct: 611 VTDEAQIAAAVDLAVARHGRLDVLYSNAGAPG 516
>gb|CW135684.1|CW135684 104_520_11117978_116_34839_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117978, DNA
sequence
Length = 684
Score = 53.3 bits (110), Expect(3) = 5e-024
Identities = 22/48 (45%), Positives = 25/48 (52%)
Frame = +1 / -1
Query: 4 VCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSG 147
+ A+LG AA Y CDVT E G LD+MFNNAGV G
Sbjct: 465 IAAELGQDAACYTRCDVTDEAQVAAAVDLAVGLHGRLDVMFNNAGVFG 322
Score = 52.4 bits (108), Expect(3) = 5e-024
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = +1 / -2
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
RRGG II +K A+V L AAE+ + G+RVN +SP + TP
Sbjct: 203 RRGGSIICTASTTSLLGGILPPAYTASKAAVVGLVRAVAAEVARSGVRVNAISPHAIPTP 24
Query: 445 LTM 453
LTM
Sbjct: 23 LTM 15
Score = 44.6 bits (91), Expect(3) = 5e-024
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1 / -2
Query: 187 FERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
F+RV+AVN G G KHAARVM+P R G I
Sbjct: 278 FDRVVAVNARGVLAGVKHAARVMLPRRGGSII 183
>gb|BG054069.1|BG054069 OV2_3_A08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 415
Score = 68.9 bits (144), Expect(2) = 7e-024
Identities = 28/46 (60%), Positives = 34/46 (73%)
Frame = -2 / -2
Query: 666 TSIFGRSSGWIRDGDPAVDEQVVAADVPRVIAGQEAHGGGDVVHPQ 529
+SIF G + DG+ V+EQVV ADVPRV+AG+ HGGGDV HPQ
Sbjct: 279 SSIFEDPKGRVDDGEAPVEEQVVPADVPRVVAGEVEHGGGDVRHPQ 142
Score = 63.4 bits (132), Expect(2) = 7e-024
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = -3 / -3
Query: 515 LRLAMPSIACSNASASRPMYLMVSGVATPAGETQFTRMPCWPS 387
LRLA S+ACSNAS S P Y + SGVA AGETQ TR+P PS
Sbjct: 131 LRLATASMACSNASPSSPTYAVASGVAAAAGETQLTRIPWRPS 3
>gb|CW111876.1|CW111876 104_485_11104574_116_34538_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104574, DNA
sequence
Length = 401
Score = 88.6 bits (187), Expect(2) = 2e-023
Identities = 37/80 (46%), Positives = 47/80 (58%)
Frame = +1 / +3
Query: 43 HCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGPACYSVRESGKADFERVLAVNLVGP 222
HCD+TSE FG LD+M NNAGV+G +R A+ RVL +N+ G
Sbjct: 3 HCDLTSEEDVSRAVDPAAERFGPLDVMVNNAGVTGAKVTDIRAVDFAEVRRVLDINVHGV 182
Query: 223 FLGTKHAARVMVPSRRGGCI 282
FLG KHAARVM+P +RG +
Sbjct: 183 FLGMKHAARVMIPQKRGSIV 242
Score = 42.3 bits (86), Expect(2) = 2e-023
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1 / +3
Query: 343 AKRAMVTLTENAAAELGQHGIRVNCVSPAGVAT 441
++ A+V LT++ AAELG+ G+R CVSP V T
Sbjct: 300 SQHAVVGLTKSVAAELGRRGVRAYCVSPYSVPT 398
>gb|CW224533.1|CW224533 104_660_11203494_148_37445_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203494, DNA
sequence
Length = 616
Score = 51.0 bits (105), Expect(3) = 4e-023
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1 / -1
Query: 529 LRVHDVAAAVRFLASDDARYISGHNLFVDGGISV 630
L+ DVA A +LASD+++Y++GHNL VDGG +V
Sbjct: 262 LQPEDVARAALYLASDESKYVNGHNLVVDGGFTV 161
Score = 49.2 bits (101), Expect(3) = 4e-023
Identities = 25/66 (37%), Positives = 31/66 (46%)
Frame = +1 / -1
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
RR G II +K A+V L A EL + G+RVN VSP +ATP
Sbjct: 541 RRRGSIICTASIAGVLGSITPHPYSVSKAAVVGLVRAVAGELARSGVRVNAVSPNYIATP 362
Query: 445 LTMRYM 462
L MR +
Sbjct: 361 LVMRIL 344
Score = 46.9 bits (96), Expect(3) = 4e-023
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1 / -1
Query: 187 FERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
F+RV+A+N G G KHAARVM P RRG I
Sbjct: 616 FDRVMAINARGVVAGVKHAARVMAPRRRGSII 521
>gb|CX607235.1|CX607235 ANR1_7_A06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_7_A06_A002 5', mRNA sequence
Length = 816
Score = 51.5 bits (106), Expect(3) = 2e-022
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +1 / +3
Query: 181 ADFERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
ADF+RV+AVN G G KHAARVMVP R G I
Sbjct: 471 ADFDRVMAVNARGVLAGVKHAARVMVPRRTGSII 572
Score = 51.5 bits (106), Expect(3) = 2e-022
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1 / +3
Query: 4 VCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSG 147
V +LGA A Y CDVT E G LD+M+NNAG+ G
Sbjct: 291 VATELGADAVRYTRCDVTDEAQVAAAVDLAVQLHGRLDVMYNNAGIGG 434
Score = 41.8 bits (85), Expect(3) = 2e-022
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1 / +3
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
RR G II +K A+V + A ++ + G+RVN +SP + TP
Sbjct: 552 RRTGSIICTASTTAVLGDMAPTPYCVSKVAVVGIVRAVAGQMARSGVRVNAISPHAIPTP 731
Query: 445 LTMRYM 462
L M M
Sbjct: 732 LAMATM 749
>gb|CN149285.1|CN149285 WOUND1_61_G04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_G04_A002 5', mRNA sequence
Length = 776
Score = 51.5 bits (106), Expect(3) = 2e-022
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +1 / +3
Query: 181 ADFERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
ADF+RV+AVN G G KHAARVMVP R G I
Sbjct: 432 ADFDRVMAVNARGVLAGVKHAARVMVPRRTGSII 533
Score = 51.5 bits (106), Expect(3) = 2e-022
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1 / +3
Query: 4 VCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSG 147
V +LGA A Y CDVT E G LD+M+NNAG+ G
Sbjct: 252 VATELGADAVRYTRCDVTDEAQVAAAVDLAVQLHGRLDVMYNNAGIGG 395
Score = 41.8 bits (85), Expect(3) = 2e-022
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1 / +3
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
RR G II +K A+V + A ++ + G+RVN +SP + TP
Sbjct: 513 RRTGSIICTASTTAVLGDMAPTPYCVSKVAVVGIVRAVAGQMARSGVRVNAISPHAIPTP 692
Query: 445 LTMRYM 462
L M M
Sbjct: 693 LAMATM 710
>gb|CW260769.1|CW260769 104_727_11229143_116_35195_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229143, DNA
sequence
Length = 597
Score = 59.3 bits (123), Expect(3) = 2e-022
Identities = 24/48 (50%), Positives = 26/48 (54%)
Frame = +1 / +1
Query: 4 VCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSG 147
V A LG AA YVHCDVT E G LD+MFNNAG+ G
Sbjct: 163 VAAQLGPDAARYVHCDVTDEAQVAAAVDLAVEVHGRLDVMFNNAGIGG 306
Score = 47.3 bits (97), Expect(3) = 2e-022
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +1 / +1
Query: 184 DFERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
DF+RV+AVN G G KHAARVM P R G I
Sbjct: 346 DFDRVMAVNARGVVAGVKHAARVMAPRRAGSII 444
Score = 38.2 bits (77), Expect(3) = 2e-022
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1 / +1
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGV 435
RR G II +K A++ + +AE+ + G+RVN +SP G+
Sbjct: 424 RRAGSIICTGSTAGVLGSLAPAAYSASKAAVLGIVRAVSAEVARSGVRVNAISPHGI 594
>gb|CX607145.1|CX607145 ANR1_7_A06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_7_A06_A002 3', mRNA sequence
Length = 686
Score = 51.5 bits (106), Expect(3) = 2e-021
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +1 / +2
Query: 181 ADFERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
ADF+RV+AVN G G KHAARVMVP R G I
Sbjct: 17 ADFDRVMAVNARGVLAGVKHAARVMVPRRTGSII 118
Score = 48.3 bits (99), Expect(3) = 2e-021
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1 / +2
Query: 529 LRVHDVAAAVRFLASDDARYISGHNLFVDGGISVA 633
L D+A A +LASD+A+Y++G NL VDGG +V+
Sbjct: 377 LEAEDIARAAVYLASDEAKYVNGQNLVVDGGYTVS 481
Score = 41.8 bits (85), Expect(3) = 2e-021
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1 / +2
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
RR G II +K A+V + A ++ + G+RVN +SP + TP
Sbjct: 98 RRTGSIICTASTTAVLGDMAPTPYCVSKVAVVGIVRAVAGQMARSGVRVNAISPHAIPTP 277
Query: 445 LTMRYM 462
L M M
Sbjct: 278 LAMATM 295
>gb|CW222650.1|CW222650 104_658_11202489_148_37178_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202489, DNA
sequence
Length = 675
Score = 51.5 bits (106), Expect(3) = 2e-021
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +1 / -3
Query: 181 ADFERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
ADF+RV+AVN G G KHAARVMVP R G I
Sbjct: 616 ADFDRVMAVNARGVLAGVKHAARVMVPRRTGSII 515
Score = 48.3 bits (99), Expect(3) = 2e-021
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1 / -3
Query: 529 LRVHDVAAAVRFLASDDARYISGHNLFVDGGISVA 633
L D+A A +LASD+A+Y++G NL VDGG +V+
Sbjct: 256 LEAEDIARAAVYLASDEAKYVNGQNLVVDGGYTVS 152
Score = 41.8 bits (85), Expect(3) = 2e-021
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1 / -3
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
RR G II +K A+V + A ++ + G+RVN +SP + TP
Sbjct: 535 RRTGSIICTASTTAVLGDMAPTPYCVSKVAVVGIVRAVAGQMARSGVRVNAISPHAIPTP 356
Query: 445 LTMRYM 462
L M M
Sbjct: 355 LAMATM 338
>gb|CN148035.1|CN148035 WOUND1_53_G05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_53_G05_A002 5', mRNA sequence
Length = 799
Score = 51.5 bits (106), Expect(3) = 2e-021
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +1 / +2
Query: 181 ADFERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
ADF+RV+AVN G G KHAARVMVP R G I
Sbjct: 485 ADFDRVMAVNARGVLAGVKHAARVMVPRRTGSII 586
Score = 51.5 bits (106), Expect(3) = 2e-021
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1 / +2
Query: 4 VCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSG 147
V +LGA A Y CDVT E G LD+M+NNAG+ G
Sbjct: 305 VATELGADAVRYTRCDVTDEAQVAAAVDLAVQLHGRLDVMYNNAGIGG 448
Score = 38.2 bits (77), Expect(3) = 2e-021
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1 / +2
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
RR G II +K A+V + A ++ + G+RVN +S + TP
Sbjct: 566 RRTGSIICTASTTAVLGDMAPTPYCVSKVAVVGIVRAVAGQMARSGVRVNAISSHAIPTP 745
Query: 445 LTMRYM 462
L M M
Sbjct: 746 LAMATM 763
>gb|BI141571.1|BI141571 IP1_54_B04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 359
Score = 103 bits (219), Expect = 5e-021
Identities = 42/56 (75%), Positives = 43/56 (76%)
Frame = +1 / +2
Query: 1 RVCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSGPACYSVR 168
RVCAD+GAGAASY HCDVTSE TFGALDIMFNNAGVSGPACYSVR
Sbjct: 191 RVCADVGAGAASYFHCDVTSEDDVAAAVDHAVATFGALDIMFNNAGVSGPACYSVR 358
>gb|CW338136.1|CW338136 104_838_11484582_148_36124_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484582, DNA
sequence
Length = 631
Score = 53.3 bits (110), Expect(3) = 6e-021
Identities = 22/48 (45%), Positives = 25/48 (52%)
Frame = +1 / +3
Query: 4 VCADLGAGAASYVHCDVTSEXXXXXXXXXXXXTFGALDIMFNNAGVSG 147
+ A+LG AA Y CDVT E G LD+MFNNAGV G
Sbjct: 195 IAAELGQDAACYTRCDVTDEAQVAAAVDLAVGLHGRLDVMFNNAGVFG 338
Score = 47.3 bits (97), Expect(3) = 6e-021
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +1 / +3
Query: 184 DFERVLAVNLVGPFLGTKHAARVMVPSRRGGCI 282
DF+RV+AVN G G KHAARVM+P R G I
Sbjct: 378 DFDRVVAVNARGVLAGVKHAARVMLPRRGGSII 476
Score = 39.1 bits (79), Expect(3) = 6e-021
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1 / +3
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGV 435
RRGG II +K A+V L AE+ + G+RVN +SP +
Sbjct: 456 RRGGSIICTASTTSLLGGILPPAYTASKAAVVGLVRAVTAEVARSGVRVNAISPHAI 626
>gb|CW265100.1|CW265100 104_734_11231675_148_35261_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231675, DNA
sequence
Length = 594
Score = 61.6 bits (128), Expect(3) = 9e-021
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = +1 / -1
Query: 463 GLEAEALEQAMEGMANLKGVGALRVHDVAAAVRFLASDDARYISGHNLFVDGGISVA 633
GL AE +++ +E +N+ L D+A A +LASDDA+Y++GHNL VDGG +V+
Sbjct: 336 GLSAEEIKRRVEIDSNVMYGTKLEEDDIARAALYLASDDAKYVNGHNLVVDGGFTVS 166
Score = 43.2 bits (88), Expect(3) = 9e-021
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1 / -1
Query: 265 RRGGCIIXXXXXXXXXXXXXXXXXXCAKRAMVTLTENAAAELGQHGIRVNCVSPAGVATP 444
RR G II +K ++ L AAE+ G+RVN +SP V TP
Sbjct: 555 RRRGSIICTASVAGLCGGMVAVAYSASKATVIGLVRAVAAEMASSGVRVNAISPYAVPTP 376
Query: 445 LTM 453
L +
Sbjct: 375 LAL 367
Score = 34.5 bits (69), Expect(3) = 9e-021
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +1 / -1
Query: 229 GTKHAARVMVPSRRGGCI 282
G KHAARVMVP RRG I
Sbjct: 588 GLKHAARVMVPRRRGSII 535
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 938,432,050
Number of Sequences: 832831
Number of extensions: 12989532
Number of successful extensions: 171559
Number of sequences better than 1.0e-020: 26
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 31028963813
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)