TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stres... 203 2e-072
gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) So... 227 1e-058
gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorgh... 155 1e-053
gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-tr... 202 7e-051
gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorgh... 143 8e-050
gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infecte... 186 5e-046
gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation... 162 3e-043
gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum met... 162 5e-039
gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkal... 104 4e-038
gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorgh... 155 6e-037
gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorgh... 155 6e-037
gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adap... 129 3e-035
gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infecte... 148 1e-034
gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient se... 146 3e-034
gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infecte... 105 2e-033
gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorg... 133 3e-030
gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorg... 133 3e-030
gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorg... 133 3e-030
gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Me... 133 3e-030
gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorg... 133 3e-030
gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infecte... 133 3e-030
gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stresse... 133 3e-030
gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves... 133 5e-030
gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorgh... 129 4e-029
gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sor... 127 2e-028
gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) So... 127 2e-028
gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-tr... 127 2e-028
gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-tr... 127 2e-028
gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient se... 127 2e-028
gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation... 122 7e-028
gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Me... 125 8e-028
gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorg... 123 3e-027
gb|BE918032.1|BE918032 OV1_1_A10.b1_A002 Ovary 1 (OV1) Sorg... 87 9e-025
gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated... 115 1e-024
gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methy... 114 2e-024
gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorgh... 113 3e-024
gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorgh... 113 4e-024
gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum m... 111 2e-023
gb|BG054083.1|BG054083 OV2_3_C07.g1_A002 Ovary 2 (OV2) Sorg... 86 2e-023
gb|CW265210.1|CW265210 104_734_11231740_116_35260_010 Sorgh... 83 1e-022
gb|BE918244.1|BE918244 OV1_3_H04.b1_A002 Ovary 1 (OV1) Sorg... 76 2e-021
gb|BE918616.1|BE918616 OV1_4_B02.b1_A002 Ovary 1 (OV1) Sorg... 76 2e-021
gb|CW334498.1|CW334498 104_833_11482533_148_36071_095 Sorgh... 101 2e-021
gb|BE918163.1|BE918163 OV1_2_G01.b1_A002 Ovary 1 (OV1) Sorg... 74 6e-021
>gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H05_A002 3', mRNA sequence
Length = 732
Score = 203 bits (437), Expect(3) = 2e-072
Identities = 82/106 (77%), Positives = 93/106 (87%)
Frame = -2 / +2
Query: 430 HMTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPI 251
HMT +DIFVC LAF+PTGWG+LLIAQ + H+GLWGSV+ALAR YEIIMG+LLFTPI
Sbjct: 308 HMTFRDIFVCFLAFLPTGWGILLIAQPCKPLARHVGLWGSVRALARAYEIIMGVLLFTPI 487
Query: 250 AFLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE* 113
LAWFPFVSEFQ RMLFNQAFSRGLQISRILGG KK+R+AR+K+*
Sbjct: 488 TILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKKERSARSKD* 625
Score = 188 bits (404), Expect(2) = 7e-054
Identities = 89/164 (54%), Positives = 103/164 (62%)
Frame = +3 / -1
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
SL RA RSF PPRIREIC PLL A LNSI WNS+T GN A IGV S P++IS* R
Sbjct: 621 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 442
Query: 297 ASALTDPHSPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMN 476
A A TDPH+P C L CAI S PHPVG NAR T +S V+ IK + I + N
Sbjct: 441 ARARTDPHNPTCRARGLQGCAISSIPHPVGKNARKHTNISRKVI*RNTIKTIKIAVKATN 262
Query: 477 ISPLISRNTSWNSALNFLLPTDTVFITSKMTKIMTHEMX*TRTL 608
I LI R SW SALN LPTDTVFIT++ I + ++ T+ L
Sbjct: 261 IKNLIRRKNSWKSALNVRLPTDTVFITNRTATIASQDIKYTKML 130
Score = 130 bits (279), Expect = 2e-029
Identities = 66/168 (39%), Positives = 96/168 (57%)
Frame = +2 / -3
Query: 113 SLLVPCSPVFLVSA*DTRNLQTSTEGLVEQHPWLELRNKREPSEECDRGEQQQAHDDLIA 292
S+ P L++ ++RNLQ+STE L++QHP LEL +K EP + D +++ H+ LI
Sbjct: 625 SIFAASRPFLLLTTKNSRNLQSSTERLIKQHPRLELGHKGEPCQYSDWSKEKHPHNYLIG 446
Query: 293 SGKRLDRSP*PHM*NS*PHSLCYQKQTPSSWHERKDANKDVLNCHVWDCYQDYDNRDKRY 472
K +RSP* +M + LC Q+ PS E A+K + H+ YQD N +
Sbjct: 445 PCKGTNRSP*SYMSSKRLARLCNQQYPPSCGQEC*KAHKYITEGHMKKYYQDNQNSSESN 266
Query: 473 EYQPLDQPEHKLELCTEFPPAN*YSLHHEQNDKDYDPRDAXNQNALRV 616
+YQ LDQ E LE+CTE P++ + LH+EQN D +PR Q+A V
Sbjct: 265 KYQKLDQTEE*LEICTECSPSHRHCLHNEQNCHDCEPRH*IYQDAFVV 122
Score = 67.0 bits (140), Expect(3) = 2e-072
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = -2 / +2
Query: 739 WEKEQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLNI 623
WE EQ+ L++SG G +EI+L++RFFIYQYGLVYHL+I
Sbjct: 2 WEVEQDHLKYSGTIGRFVEIILAVRFFIYQYGLVYHLHI 118
Score = 44.6 bits (91), Expect(2) = 7e-054
Identities = 21/37 (56%), Positives = 22/37 (59%)
Frame = +3 / -1
Query: 630 K**TRPYW*IKKRNESTISRTVPRFPECLRXSCSFSH 740
K *TRPYW +KKR IS P PE R SCS SH
Sbjct: 111 KW*TRPYWYMKKRTAKIISTKRPIVPEYFR*SCSTSH 1
Score = 43.2 bits (88), Expect(3) = 2e-072
Identities = 22/42 (52%), Positives = 23/42 (54%)
Frame = -2 / +2
Query: 616 HTKSXXXXXXXXXXXXXXXXVMKTVSVGRRKFSAEFQLVFRL 491
H KS VMKTVSVGRR FSA+FQL FRL
Sbjct: 122 HDKSILVYLMSWLAIVAVLFVMKTVSVGRRTFSADFQLFFRL 247
>gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 423
Score = 227 bits (491), Expect = 1e-058
Identities = 94/105 (89%), Positives = 98/105 (93%)
Frame = +3 / -2
Query: 81 QHYQAHAASATHSLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGV 260
+H+ SATHSLFRAA SFLCPPRIREICRPLLKAWLNSIL WNSETNGNQARNAIGV
Sbjct: 317 RHHPPST*SATHSLFRAALSFLCPPRIREICRPLLKAWLNSILVWNSETNGNQARNAIGV 138
Query: 261 NNSKPMMIS*PRASALTDPHSPICEIADLIVCAIRSKPHPVGMNA 395
N+SKPMMIS*PRASALTDPHSPICEIADLIVCAIRSKPHP+GMNA
Sbjct: 137 NSSKPMMIS*PRASALTDPHSPICEIADLIVCAIRSKPHPLGMNA 3
Score = 226 bits (489), Expect = 3e-058
Identities = 96/98 (97%), Positives = 97/98 (98%)
Frame = -2 / +1
Query: 397 LAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSE 218
LAFMP+GWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSE
Sbjct: 1 LAFMPSGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSE 180
Query: 217 FQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE*VAD 104
FQ RMLFNQAFSRGLQISRILGGHKKDRAARNKE*VAD
Sbjct: 181 FQTRMLFNQAFSRGLQISRILGGHKKDRAARNKE*VAD 294
Score = 214 bits (462), Expect = 1e-054
Identities = 93/114 (81%), Positives = 96/114 (84%)
Frame = +2 / -1
Query: 56 GHG*IVCRSALPGSRCIGYSLLVPCSPVFLVSA*DTRNLQTSTEGLVEQHPWLELRNKRE 235
G *+ C + P IGYSLLVPCSPVF VS *DTRNLQTSTEGLVE HP LELRNKRE
Sbjct: 342 GAN*LNCPTTPPSIYLIGYSLLVPCSPVFFVST*DTRNLQTSTEGLVE*HPCLELRNKRE 163
Query: 236 PSEECDRGEQQQAHDDLIASGKRLDRSP*PHM*NS*PHSLCYQKQTPSSWHERK 397
PS ECDRGEQQQAHDDLIASGKR DRSP*PHM*NS*PHSLCYQKQTP + HERK
Sbjct: 162 PS*ECDRGEQQQAHDDLIASGKRFDRSP*PHM*NS*PHSLCYQKQTPPTRHERK 1
Score = 211 bits (456), Expect = 9e-054
Identities = 83/93 (89%), Positives = 86/93 (92%)
Frame = -1 / +3
Query: 395 CVHANWMGFASDSTNYEVSYFTYGAMGIGQGACPRL*DHHGLAVVHPDRIPRLVPVCFGV 216
CVHA W+GFASDSTNYEVSYFTYGAMGIGQ ACPRL*DHHGLA VHPDRIP LVPVCFGV
Sbjct: 3 CVHAEWVGFASDSTNYEVSYFTYGAMGIGQSACPRL*DHHGLAAVHPDRIPSLVPVCFGV 182
Query: 215 PAKDAVQPGLQ*RSADFSYPRRTQERPGCTEQG 117
P KDA+QPGLQ*RSADFSYPR TQ+R GCTEQG
Sbjct: 183 PDKDAIQPGLQ*RSADFSYPRWTQKRQGCTEQG 281
Score = 184 bits (396), Expect = 2e-045
Identities = 75/99 (75%), Positives = 81/99 (81%)
Frame = -3 / +2
Query: 396 LRSCQLDGVCF**HKL*GQLFHIWGYGDRSRRLPEAMRSSWACCCSPXXXXXXXXXXXXX 217
LRSC++ GVCF**HKL*GQLFHIWGYGDRS+RLPEAMRSSWACCCSP
Sbjct: 2 LRSCRVGGVCF**HKL*GQLFHIWGYGDRSKRLPEAMRSSWACCCSPRSHS*LGSRLFRS 181
Query: 216 XSQGCCSTRPSVEVCRFLVS*ADTRKTGLHGTRSE*PMQ 100
QGC STRPSVEVCRFLVS* DT+KTGLHGTRSE*P++
Sbjct: 182 SRQGCYSTRPSVEVCRFLVS*VDTKKTGLHGTRSE*PIR 298
Score = 175 bits (377), Expect = 7e-043
Identities = 82/93 (88%), Positives = 83/93 (89%)
Frame = +1 / -3
Query: 118 PCSVQPGLSCVRLGYEKSADLY*RPG*TASLAGTPKQTGTKRGMRSG*TTASP**SHSLG 297
PCSVQP L CV LGYEKSADLY*RPG* ASL+GTPKQTGTK GMRSG*T ASP**SHSLG
Sbjct: 280 PCSVQPCLFCVHLGYEKSADLY*RPG*IASLSGTPKQTGTKLGMRSG*TAASP**SHSLG 101
Query: 298 QAP*PIPIAPYVK*LTS*FVLSEANPIQLA*TQ 396
QA *PIPIAPYVK*LTS*FVLSEANP A*TQ
Sbjct: 100 QAL*PIPIAPYVK*LTS*FVLSEANPTHSA*TQ 2
>gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892573, DNA
sequence
Length = 745
Score = 155 bits (334), Expect(3) = 1e-053
Identities = 65/86 (75%), Positives = 74/86 (86%)
Frame = -2 / +3
Query: 370 LLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQ 191
+L IAQ + H+GLWGSV+ALAR YEIIMG+LLFTPI LAWFPFVSEFQ RMLFNQ
Sbjct: 330 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 509
Query: 190 AFSRGLQISRILGGHKKDRAARNKE* 113
AFSRGLQISRILGG KK+R+AR+K+*
Sbjct: 510 AFSRGLQISRILGGQKKERSARSKD* 587
Score = 113 bits (241), Expect(2) = 4e-038
Identities = 51/82 (62%), Positives = 55/82 (67%)
Frame = +3 / -1
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
SL RA RSF PPRIREIC PLL A LNSI WNS+T GN A IGV S P++IS* R
Sbjct: 583 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 404
Query: 297 ASALTDPHSPICEIADLIVCAI 362
A A TDPH+P C L CAI
Sbjct: 403 ARARTDPHNPTCRARGLQACAI 338
Score = 68.9 bits (144), Expect(2) = 8e-021
Identities = 34/85 (40%), Positives = 51/85 (60%)
Frame = +2 / -3
Query: 113 SLLVPCSPVFLVSA*DTRNLQTSTEGLVEQHPWLELRNKREPSEECDRGEQQQAHDDLIA 292
S+ P L++ ++RNLQ+STE L++QHP LEL +K EP + D +++ H+ LI
Sbjct: 587 SIFAASRPFLLLTTKNSRNLQSSTERLIKQHPRLELGHKGEPCQYSDWSKEKHPHNYLIG 408
Query: 293 SGKRLDRSP*PHM*NS*PHSLCYQK 367
K +RSP* +M + SLC K
Sbjct: 407 PCKGTNRSP*SYMSSKRLASLCNLK 333
Score = 66.6 bits (139), Expect(2) = 4e-038
Identities = 32/61 (52%), Positives = 36/61 (59%)
Frame = +3 / -2
Query: 366 SKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMNISPLISRNTSWNSALNFLLPTDT 545
S PHPVG NAR T +S V+ IK + I + NI LI R SW SALN LPTDT
Sbjct: 228 SIPHPVGKNARKHTNISRKVI*RNTIKTIKIAVKATNIKNLIRRKNSWKSALNVRLPTDT 49
Query: 546 V 548
V
Sbjct: 48 V 46
Score = 54.7 bits (113), Expect(3) = 1e-053
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = -2 / +2
Query: 430 HMTVQDIFVCILAFMPTGWGLLLIAQTM 347
HMT +DIFVC LAF+PTGWG+LL+ ++
Sbjct: 164 HMTFRDIFVCFLAFLPTGWGILLVRHSL 247
Score = 52.8 bits (109), Expect(2) = 8e-021
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = +2 / -1
Query: 353 LCYQKQTPSSWHERKDANKDVLNCHVWDCYQDYDNRDKRYEYQPLDQPEHKLELCTEFPP 532
+ YQ+ PS E A+K + H+ YQD N + +YQ LDQ E LE+CTE P
Sbjct: 241 MTYQQYPPSCGQEC*KAHKYITEGHMKKYYQDNQNSSESNKYQKLDQTEE*LEICTECSP 62
Query: 533 AN*YSL 550
++ + L
Sbjct: 61 SHRHCL 44
Score = 39.6 bits (80), Expect(3) = 1e-053
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2 / +2
Query: 553 MKTVSVGRRKFSAEFQLVFRL 491
++TVSVGRR FSA+FQL FRL
Sbjct: 41 LQTVSVGRRTFSADFQLFFRL 103
>gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 3', mRNA sequence
Length = 555
Score = 202 bits (435), Expect = 7e-051
Identities = 81/106 (76%), Positives = 93/106 (87%)
Frame = -2 / +3
Query: 430 HMTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPI 251
HMT +DI+VC LAF+PTGWG+LLIAQ + H+GLWGSV+ALAR YEIIMG+LLFTPI
Sbjct: 48 HMTFRDIYVCFLAFLPTGWGILLIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPI 227
Query: 250 AFLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE* 113
LAWFPFVSEFQ RMLFNQAFSRGLQISRILGG KK+R+AR+K+*
Sbjct: 228 TILAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQKKERSARSKD* 365
Score = 141 bits (302), Expect = 2e-032
Identities = 67/120 (55%), Positives = 75/120 (62%)
Frame = +3 / -3
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
SL RA RSF PPRIREIC PLL A LNSI WNS+T GN A IGV S P++IS* R
Sbjct: 361 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 182
Query: 297 ASALTDPHSPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMN 476
A A TDPH+P C L CAI S PHPVG NAR T +S V+ IK + I + N
Sbjct: 181 ARARTDPHNPTCRARGLQACAISSIPHPVGKNARKHTYISRKVI*RNTIKTIKIAVKATN 2
>gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174363, DNA
sequence
Length = 703
Score = 143 bits (306), Expect(4) = 8e-050
Identities = 59/78 (75%), Positives = 66/78 (84%)
Frame = -2 / +1
Query: 370 LLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQ 191
+L IAQ + H+GLWGSV+ALAR YEIIMG+LLFTPI LAWFPFVSEFQ RMLFNQ
Sbjct: 412 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 591
Query: 190 AFSRGLQISRILGGHKKD 137
AFSRGLQISRILGG K++
Sbjct: 592 AFSRGLQISRILGGQKRN 645
Score = 101 bits (215), Expect(2) = 1e-034
Identities = 44/71 (61%), Positives = 48/71 (67%)
Frame = +3 / -3
Query: 150 PPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PRASALTDPHSPI 329
PPRIREIC PLL A LNSI WNS+T GN A IGV S P++IS* RA A TDPH+P
Sbjct: 632 PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*ARARARTDPHNPT 453
Query: 330 CEIADLIVCAI 362
C L CAI
Sbjct: 452 CRARGLQACAI 420
Score = 66.6 bits (139), Expect(2) = 1e-034
Identities = 32/61 (52%), Positives = 36/61 (59%)
Frame = +3 / -1
Query: 366 SKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMNISPLISRNTSWNSALNFLLPTDT 545
S PHPVG NAR T +S V+ IK + I + NI LI R SW SALN LPTDT
Sbjct: 310 SIPHPVGKNARKHTNISRKVI*RNTIKTIKIAVKATNIKNLIRRKNSWKSALNVRLPTDT 131
Query: 546 V 548
V
Sbjct: 130 V 128
Score = 54.7 bits (113), Expect(4) = 8e-050
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = -2 / +3
Query: 430 HMTVQDIFVCILAFMPTGWGLLLIAQTM 347
HMT +DIFVC LAF+PTGWG+LL+ ++
Sbjct: 246 HMTFRDIFVCFLAFLPTGWGILLVRHSL 329
Score = 39.6 bits (80), Expect(4) = 8e-050
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2 / +3
Query: 553 MKTVSVGRRKFSAEFQLVFRL 491
++TVSVGRR FSA+FQL FRL
Sbjct: 123 LQTVSVGRRTFSADFQLFFRL 185
Score = 21.7 bits (41), Expect(4) = 8e-050
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = -3 / +1
Query: 57 PTWHYTCT 34
P W++TCT
Sbjct: 676 PLWYFTCT 699
>gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 511
Score = 186 bits (400), Expect = 5e-046
Identities = 75/97 (77%), Positives = 85/97 (87%)
Frame = -2 / +1
Query: 403 CILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFV 224
C LAF+PTGWG+LLIAQ + H+GLWGSV+ALAR YEIIMG+LLFTPI LAWFPFV
Sbjct: 1 CFLAFLPTGWGILLIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFV 180
Query: 223 SEFQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE* 113
SEFQ RMLFNQAFSRGLQISRILGG KK+R+AR+K+*
Sbjct: 181 SEFQTRMLFNQAFSRGLQISRILGGQKKERSARSKD* 291
Score = 134 bits (287), Expect = 2e-030
Identities = 60/94 (63%), Positives = 64/94 (68%)
Frame = +3 / -3
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
SL RA RSF PPRIREIC PLL A LNSI WNS+T GN A IGV S P++IS* R
Sbjct: 287 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 108
Query: 297 ASALTDPHSPICEIADLIVCAIRSKPHPVGMNAR 398
A A TDPH+P C L CAI S PHPVG NAR
Sbjct: 107 ARARTDPHNPTCRARGLQACAISSIPHPVGKNAR 6
>gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 727
Score = 162 bits (349), Expect = 5e-039
Identities = 59/79 (74%), Positives = 67/79 (84%)
Frame = -1 / -3
Query: 548 DCISWQEEIQCRVPACVPADQGADIHNVYLYYHNLDSNPTHDSSGHLCLHPCVHANWMGF 369
DCISWQEEIQCRVPACVP DQG+DIHNVYLYYHN+DSNPTHDSSGHLCLHPCVHA+W+GF
Sbjct: 323 DCISWQEEIQCRVPACVPVDQGSDIHNVYLYYHNIDSNPTHDSSGHLCLHPCVHADWVGF 144
Query: 368 ASDSTNYEVSYFTYGAMGI 312
AS +F + +G+
Sbjct: 143 ASGK*LLLHGFFVWLTVGL 87
Score = 156 bits (335), Expect(2) = 3e-043
Identities = 60/64 (93%), Positives = 60/64 (93%)
Frame = +2 / +2
Query: 359 YQKQTPSSWHERKDANKDVLNCHVWDCYQDYDNRDKRYEYQPLDQPEHKLELCTEFPPAN 538
YQKQTP S HERKDANKDVLNCHVWDCYQ YDNRDKRYEYQ LDQPEHKLELCTEFPPAN
Sbjct: 134 YQKQTPPSRHERKDANKDVLNCHVWDCYQYYDNRDKRYEYQTLDQPEHKLELCTEFPPAN 313
Query: 539 *YSL 550
*YSL
Sbjct: 314 *YSL 325
Score = 139 bits (299), Expect(2) = 1e-037
Identities = 59/62 (95%), Positives = 60/62 (96%)
Frame = +3 / +3
Query: 363 RSKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMNISPLISRNTSWNSALNFLLPTD 542
RSKPHPVGMNARMQTKMS*TVMCGIAI IMIIEINVMNI PLI+RNTSWNSALNFLLPTD
Sbjct: 138 RSKPHPVGMNARMQTKMS*TVMCGIAINIMIIEINVMNIRPLINRNTSWNSALNFLLPTD 317
Query: 543 TV 548
TV
Sbjct: 318 TV 323
Score = 100 bits (213), Expect(2) = 3e-025
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = +1 / +1
Query: 358 LSEANPIQLA*TQGCKQRCPELSCVGLLSRL***R*TL*ISAP*SAGTQAGTLH 519
L EANP Q A*TQGCKQRCPELSCVGLLS L***R*TL*IS P*S GTQAGTLH
Sbjct: 133 LPEANPTQSA*TQGCKQRCPELSCVGLLSIL***R*TL*ISDP*STGTQAGTLH 294
Score = 65.7 bits (137), Expect(3) = 1e-024
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -2 / -1
Query: 433 PHMTVQDIFVCILAFMPTGWGLLLIA 356
PHMTVQDIFVCILAFMPTGWGLLL++
Sbjct: 208 PHMTVQDIFVCILAFMPTGWGLLLVS 131
Score = 46.0 bits (94), Expect(3) = 1e-024
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = -2 / -1
Query: 553 MKTVSVGRRKFSAEFQLVFRL 491
++TVSVGRRKFSAEFQLVFRL
Sbjct: 328 LQTVSVGRRKFSAEFQLVFRL 266
Score = 40.5 bits (82), Expect(3) = 1e-024
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -1 / -2
Query: 365 SDSTNYEVSYFTYGAMGIG 309
SDSTNYEVSYFTYGA G
Sbjct: 60 SDSTNYEVSYFTYGATSRG 4
Score = 40.5 bits (82), Expect(2) = 3e-043
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1 / +2
Query: 310 PIPIAPYVK*LTS*FVLSEAN 372
P+ +APYVK*LTS*FVLSE N
Sbjct: 5 PLEVAPYVK*LTS*FVLSETN 67
Score = 38.6 bits (78), Expect(2) = 1e-037
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2 / +3
Query: 323 PHM*NS*PHSLCYQKQT 373
PHM*NS*PHSLCY K T
Sbjct: 18 PHM*NS*PHSLCYLKPT 68
Score = 36.3 bits (73), Expect(2) = 3e-025
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3 / +1
Query: 324 PICEIADLIVCAIRSKPH 377
PICEIADLIVCAI ++ H
Sbjct: 19 PICEIADLIVCAI*NQQH 72
>gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431366, DNA
sequence
Length = 343
Score = 162 bits (349), Expect = 5e-039
Identities = 59/79 (74%), Positives = 67/79 (84%)
Frame = -1 / +1
Query: 548 DCISWQEEIQCRVPACVPADQGADIHNVYLYYHNLDSNPTHDSSGHLCLHPCVHANWMGF 369
DCISWQEEIQCRVPACVP DQG+DIHNVYLYYHN+DSNPTHDSSGHLCLHPCVHA+W+GF
Sbjct: 97 DCISWQEEIQCRVPACVPVDQGSDIHNVYLYYHNIDSNPTHDSSGHLCLHPCVHADWVGF 276
Query: 368 ASDSTNYEVSYFTYGAMGI 312
AS +F + +G+
Sbjct: 277 ASGK*LLLHGFFVWLTVGL 333
Score = 156 bits (335), Expect = 4e-037
Identities = 60/64 (93%), Positives = 60/64 (93%)
Frame = +2 / -1
Query: 359 YQKQTPSSWHERKDANKDVLNCHVWDCYQDYDNRDKRYEYQPLDQPEHKLELCTEFPPAN 538
YQKQTP S HERKDANKDVLNCHVWDCYQ YDNRDKRYEYQ LDQPEHKLELCTEFPPAN
Sbjct: 286 YQKQTPPSRHERKDANKDVLNCHVWDCYQYYDNRDKRYEYQTLDQPEHKLELCTEFPPAN 107
Query: 539 *YSL 550
*YSL
Sbjct: 106 *YSL 95
Score = 139 bits (299), Expect = 4e-032
Identities = 59/62 (95%), Positives = 60/62 (96%)
Frame = +3 / -2
Query: 363 RSKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMNISPLISRNTSWNSALNFLLPTD 542
RSKPHPVGMNARMQTKMS*TVMCGIAI IMIIEINVMNI PLI+RNTSWNSALNFLLPTD
Sbjct: 282 RSKPHPVGMNARMQTKMS*TVMCGIAINIMIIEINVMNIRPLINRNTSWNSALNFLLPTD 103
Query: 543 TV 548
TV
Sbjct: 102 TV 97
>gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G03_A002 5', mRNA sequence
Length = 809
Score = 104 bits (221), Expect(2) = 4e-038
Identities = 38/78 (48%), Positives = 53/78 (67%)
Frame = -2 / +3
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+ +C LAF+PTGWGLLLI Q +R I + +W ++ +A Y+ MG LLF PIA
Sbjct: 576 LSIXDLIICCLAFIPTGWGLLLIVQVLRPKIEYYAIWEPIQVIAHAYDYGMGSLLFFPIA 755
Query: 247 FLAWFPFVSEFQPRMLFN 194
LAW P +S Q R+LFN
Sbjct: 756 VLAWMPVISAIQTRVLFN 809
Score = 78.0 bits (164), Expect(2) = 4e-038
Identities = 31/52 (59%), Positives = 36/52 (69%)
Frame = -2 / +3
Query: 760 EKXXXSWWEKEQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLNITTHTKS 605
EK SWW E LRHS +LE++LSLRFFIYQYGLVYHLNI+ K+
Sbjct: 243 EKSWESWWNGENAHLRHSVLSSRILEVLLSLRFFIYQYGLVYHLNISQDNKN 398
>gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140330, DNA
sequence
Length = 721
Score = 155 bits (334), Expect = 6e-037
Identities = 65/86 (75%), Positives = 74/86 (86%)
Frame = -2 / +1
Query: 370 LLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQ 191
+L IAQ + H+GLWGSV+ALAR YEIIMG+LLFTPI LAWFPFVSEFQ RMLFNQ
Sbjct: 121 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 300
Query: 190 AFSRGLQISRILGGHKKDRAARNKE* 113
AFSRGLQISRILGG KK+R+AR+K+*
Sbjct: 301 AFSRGLQISRILGGQKKERSARSKD* 378
Score = 113 bits (241), Expect = 4e-024
Identities = 51/82 (62%), Positives = 55/82 (67%)
Frame = +3 / -3
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
SL RA RSF PPRIREIC PLL A LNSI WNS+T GN A IGV S P++IS* R
Sbjct: 374 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 195
Query: 297 ASALTDPHSPICEIADLIVCAI 362
A A TDPH+P C L CAI
Sbjct: 194 ARARTDPHNPTCRARGLQACAI 129
>gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470397, DNA
sequence
Length = 730
Score = 155 bits (334), Expect = 6e-037
Identities = 65/86 (75%), Positives = 74/86 (86%)
Frame = -2 / +1
Query: 370 LLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQ 191
+L IAQ + H+GLWGSV+ALAR YEIIMG+LLFTPI LAWFPFVSEFQ RMLFNQ
Sbjct: 61 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 240
Query: 190 AFSRGLQISRILGGHKKDRAARNKE* 113
AFSRGLQISRILGG KK+R+AR+K+*
Sbjct: 241 AFSRGLQISRILGGQKKERSARSKD* 318
Score = 113 bits (241), Expect = 4e-024
Identities = 51/82 (62%), Positives = 55/82 (67%)
Frame = +3 / -3
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
SL RA RSF PPRIREIC PLL A LNSI WNS+T GN A IGV S P++IS* R
Sbjct: 314 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 135
Query: 297 ASALTDPHSPICEIADLIVCAI 362
A A TDPH+P C L CAI
Sbjct: 134 ARARTDPHNPTCRARGLQACAI 69
>gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx93f03 5', DNA sequence
Length = 633
Score = 129 bits (277), Expect(3) = 3e-035
Identities = 52/74 (70%), Positives = 61/74 (82%)
Frame = -2 / -3
Query: 361 IAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFS 182
I+Q + I GLWGSVKAL+RGYE +MG+++F P+A LAWFPFVSEFQ R+LFNQAFS
Sbjct: 262 ISQASKPVIKACGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQTRLLFNQAFS 83
Query: 181 RGLQISRILGGHKK 140
RGLQISRIL G KK
Sbjct: 82 RGLQISRILAGGKK 41
Score = 40.0 bits (81), Expect(3) = 3e-035
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2 / -1
Query: 430 HMTVQDIFVCILAFMPTGWGLLLI 359
H+TV DIF LAF PTGW +L +
Sbjct: 543 HLTVGDIFASFLAFAPTGWAILQV 472
Score = 21.7 bits (41), Expect(3) = 3e-035
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2 / -1
Query: 520 SAEFQLVFRL 491
SA+FQL+FRL
Sbjct: 633 SADFQLMFRL 604
>gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 437
Score = 148 bits (317), Expect = 1e-034
Identities = 61/73 (83%), Positives = 67/73 (91%)
Frame = -2 / +1
Query: 331 HMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFSRGLQISRILG 152
H+GLWGSV+ALAR YEIIMG+LLFTPI LAWFPFVSEFQ RMLFNQAFSRGLQISRILG
Sbjct: 4 HVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGLQISRILG 183
Query: 151 GHKKDRAARNKE* 113
G KK+R AR+K+*
Sbjct: 184 GQKKERFARSKD* 222
Score = 106 bits (226), Expect = 5e-022
Identities = 47/72 (65%), Positives = 51/72 (70%)
Frame = +3 / -1
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
SL RA RSF PPRIREIC PLL A LNSI WNS+T GN A IGV S P++IS* R
Sbjct: 218 SLLRANRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 39
Query: 297 ASALTDPHSPIC 332
A A TDPH+P C
Sbjct: 38 ARARTDPHNPTC 3
>gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_A03_A002 3', mRNA sequence
Length = 417
Score = 146 bits (314), Expect = 3e-034
Identities = 61/73 (83%), Positives = 67/73 (91%)
Frame = -2 / +2
Query: 331 HMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFSRGLQISRILG 152
H+GLWGSV ALAR YEIIMG+LLFTPI LAWFPFVSEFQ RMLFNQAFSRGLQISRILG
Sbjct: 8 HVGLWGSVGALARPYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGLQISRILG 187
Query: 151 GHKKDRAARNKE* 113
G KK+R+AR+K+*
Sbjct: 188 GQKKERSARSKD* 226
Score = 105 bits (224), Expect = 9e-022
Identities = 47/72 (65%), Positives = 51/72 (70%)
Frame = +3 / -1
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
SL RA RSF PPRIREIC PLL A LNSI WNS+T GN A IGV S P++IS* R
Sbjct: 222 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*GR 43
Query: 297 ASALTDPHSPIC 332
A A TDPH+P C
Sbjct: 42 ARAPTDPHNPTC 7
>gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 588
Score = 105 bits (224), Expect(3) = 2e-033
Identities = 37/79 (46%), Positives = 57/79 (72%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 305 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 484
Query: 247 FLAWFPFVSEFQPRMLFNQ 191
+WFPF+S FQ R+LF +
Sbjct: 485 ICSWFPFISTFQTRLLFTR 541
Score = 49.6 bits (102), Expect(3) = 2e-033
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -2 / +2
Query: 730 EQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLN 626
E+E RG +LE +LSLRFFI+QYG+VYH++
Sbjct: 5 EEELQHIYSIRGRILETILSLRFFIFQYGVVYHMH 109
Score = 29.5 bits (58), Expect(3) = 2e-033
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2 / +1
Query: 196 NQAFSRGLQISRILGGH 146
+QAFSRGL+IS IL G+
Sbjct: 535 HQAFSRGLEISLILAGN 585
>gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 352
Score = 133 bits (286), Expect = 3e-030
Identities = 50/94 (53%), Positives = 71/94 (75%)
Frame = -2 / +1
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 25 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 204
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGH 146
+WFPF+S FQ R+LFNQAFSRGL+IS IL G+
Sbjct: 205 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 306
>gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 651
Score = 133 bits (286), Expect = 3e-030
Identities = 50/94 (53%), Positives = 71/94 (75%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 128 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 307
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGH 146
+WFPF+S FQ R+LFNQAFSRGL+IS IL G+
Sbjct: 308 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 409
>gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 650
Score = 133 bits (286), Expect = 3e-030
Identities = 50/94 (53%), Positives = 71/94 (75%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 116 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 295
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGH 146
+WFPF+S FQ R+LFNQAFSRGL+IS IL G+
Sbjct: 296 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 397
>gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 601
Score = 133 bits (286), Expect = 3e-030
Identities = 50/94 (53%), Positives = 71/94 (75%)
Frame = -2 / +1
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 58 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 237
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGH 146
+WFPF+S FQ R+LFNQAFSRGL+IS IL G+
Sbjct: 238 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 339
>gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 590
Score = 133 bits (286), Expect = 3e-030
Identities = 50/94 (53%), Positives = 71/94 (75%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 62 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 241
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGH 146
+WFPF+S FQ R+LFNQAFSRGL+IS IL G+
Sbjct: 242 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 343
>gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 612
Score = 133 bits (286), Expect = 3e-030
Identities = 50/94 (53%), Positives = 71/94 (75%)
Frame = -2 / +3
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 60 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 239
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGH 146
+WFPF+S FQ R+LFNQAFSRGL+IS IL G+
Sbjct: 240 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 341
>gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_20_E12_A010 3', mRNA sequence
Length = 634
Score = 133 bits (286), Expect = 3e-030
Identities = 50/94 (53%), Positives = 71/94 (75%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 65 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 244
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGH 146
+WFPF+S FQ R+LFNQAFSRGL+IS IL G+
Sbjct: 245 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 346
>gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 3', mRNA sequence
Length = 735
Score = 133 bits (284), Expect = 5e-030
Identities = 50/94 (53%), Positives = 70/94 (74%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 209 LSIGDVFASILAFVPTGWGIISIAMAWNPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 388
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGH 146
+WFPF+S FQ R+LFNQAFSRGL+IS IL G+
Sbjct: 389 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 490
>gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204129, DNA
sequence
Length = 682
Score = 129 bits (277), Expect = 4e-029
Identities = 52/74 (70%), Positives = 61/74 (82%)
Frame = -2 / -2
Query: 361 IAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFS 182
I+Q + I GLWGSVKAL+RGYE +MG+++F P+A LAWFPFVSEFQ R+LFNQAFS
Sbjct: 558 ISQASKPVIKACGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQTRLLFNQAFS 379
Query: 181 RGLQISRILGGHKK 140
RGLQISRIL G KK
Sbjct: 378 RGLQISRILAGGKK 337
>gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 127 bits (272), Expect = 2e-028
Identities = 50/97 (51%), Positives = 68/97 (70%)
Frame = -2 / +2
Query: 424 TVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAF 245
T+ D+F LAF+ TGW +L +A T + + + LW SV+ +AR Y+ MG ++F PI F
Sbjct: 29 TIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVF 208
Query: 244 LAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDR 134
+WFPFVS FQ R LFNQAFSRGL+IS IL G+K ++
Sbjct: 209 FSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKANQ 319
>gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 127 bits (272), Expect = 2e-028
Identities = 50/97 (51%), Positives = 68/97 (70%)
Frame = -2 / +1
Query: 424 TVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAF 245
T+ D+F LAF+ TGW +L +A T + + + LW SV+ +AR Y+ MG ++F PI F
Sbjct: 169 TIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVF 348
Query: 244 LAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDR 134
+WFPFVS FQ R LFNQAFSRGL+IS IL G+K ++
Sbjct: 349 FSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKANQ 459
>gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 3', mRNA sequence
Length = 637
Score = 127 bits (272), Expect = 2e-028
Identities = 50/97 (51%), Positives = 68/97 (70%)
Frame = -2 / +3
Query: 424 TVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAF 245
T+ D+F LAF+ TGW +L +A T + + + LW SV+ +AR Y+ MG ++F PI F
Sbjct: 147 TIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVF 326
Query: 244 LAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDR 134
+WFPFVS FQ R LFNQAFSRGL+IS IL G+K ++
Sbjct: 327 FSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKANQ 437
>gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 5', mRNA sequence
Length = 612
Score = 127 bits (272), Expect = 2e-028
Identities = 50/97 (51%), Positives = 68/97 (70%)
Frame = -2 / +2
Query: 424 TVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAF 245
T+ D+F LAF+ TGW +L +A T + + + LW SV+ +AR Y+ MG ++F PI F
Sbjct: 146 TIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVF 325
Query: 244 LAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDR 134
+WFPFVS FQ R LFNQAFSRGL+IS IL G+K ++
Sbjct: 326 FSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKANQ 436
>gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 3', mRNA sequence
Length = 587
Score = 127 bits (272), Expect = 2e-028
Identities = 50/97 (51%), Positives = 68/97 (70%)
Frame = -2 / +1
Query: 424 TVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAF 245
T+ D+F LAF+ TGW +L +A T + + + LW SV+ +AR Y+ MG ++F PI F
Sbjct: 130 TIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVF 309
Query: 244 LAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDR 134
+WFPFVS FQ R LFNQAFSRGL+IS IL G+K ++
Sbjct: 310 FSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKANQ 420
>gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 636
Score = 122 bits (261), Expect(2) = 7e-028
Identities = 53/60 (88%), Positives = 54/60 (90%)
Frame = +3 / -1
Query: 582 HEMX*TRTLFV*VVMFK**TRPYW*IKKRNESTISRTVPRFPECLRXSCSFSHHDXXLFS 761
+EM TRTLFV*VVMFK**TRPYW*IKKRN STISRTVPRFPECLR SCSFSHHD LFS
Sbjct: 603 NEMCITRTLFV*VVMFK**TRPYW*IKKRNASTISRTVPRFPECLRGSCSFSHHDSQLFS 424
Score = 120 bits (257), Expect = 3e-026
Identities = 49/59 (83%), Positives = 51/59 (86%)
Frame = +1 / -2
Query: 586 RCXKPERSSCEW*CSNDKQDHTGK*RSATKALFQEQCHAFQNA*XXPALFPTMTXXFSL 762
RC PERS CEW*CSNDKQDHTG+*RSA +ALFQEQCHAFQNA* PALFPTMT FSL
Sbjct: 599 RCVLPERSLCEW*CSNDKQDHTGR*RSAMQALFQEQCHAFQNA*EAPALFPTMTPNFSL 423
Score = 116 bits (249), Expect = 3e-025
Identities = 47/52 (90%), Positives = 48/52 (92%)
Frame = -2 / +2
Query: 760 EKXXXSWWEKEQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLNITTHTKS 605
EK SWWEKEQE LRHSGKRGTVLEIVL+LRFFIYQYGLVYHLNITTHTKS
Sbjct: 425 EKSWESWWEKEQEPLRHSGKRGTVLEIVLALRFFIYQYGLVYHLNITTHTKS 580
Score = 106 bits (227), Expect = 3e-022
Identities = 47/55 (85%), Positives = 48/55 (87%)
Frame = -3 / +3
Query: 762 QRKXXSHGGKKSRXXLGILESVALFLK*CFRCASLFTSMVLFII*TSPLTRRAFW 598
QRK SHGGKKSR LGILESVALFLK*C CASL TSMVLFII*TSPLT+RAFW
Sbjct: 423 QRKVGSHGGKKSRSLLGILESVALFLK*CLHCASLSTSMVLFII*TSPLTQRAFW 587
Score = 23.1 bits (44), Expect(2) = 7e-028
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3 / -2
Query: 774 YLXXX*XXYSSQXXHP 821
YL * YSSQ HP
Sbjct: 410 YLHGY*STYSSQSSHP 363
>gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 397
Score = 125 bits (268), Expect = 8e-028
Identities = 53/61 (86%), Positives = 56/61 (91%)
Frame = -2 / +1
Query: 283 IIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE*VAD 104
I+MGLLLFTPIAFLAWFP VSEFQ RMLFNQAFSRGLQISRILGG KKDR +RNKE*+ D
Sbjct: 1 ILMGLLLFTPIAFLAWFPLVSEFQTRMLFNQAFSRGLQISRILGGRKKDRGSRNKE*LRD 180
Query: 103 A 101
A
Sbjct: 181 A 183
Score = 110 bits (235), Expect = 3e-023
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +3 / -3
Query: 99 AASATHSLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPM 278
+AS +SLFR RSFL PPRIREICRPLLKAWLNSIL WNS+TNGNQAR A+GVN P+
Sbjct: 185 SASRNYSLFRDPRSFLRPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNRRSPI 6
>gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 508
Score = 123 bits (264), Expect = 3e-027
Identities = 47/84 (55%), Positives = 64/84 (76%)
Frame = -2 / +1
Query: 397 LAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSE 218
LAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA +WFPF+S
Sbjct: 1 LAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFIST 180
Query: 217 FQPRMLFNQAFSRGLQISRILGGH 146
FQ R+LFNQAFSRGL+IS IL G+
Sbjct: 181 FQTRLLFNQAFSRGLEISLILAGN 252
>gb|BE918032.1|BE918032 OV1_1_A10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 566
Score = 87.2 bits (184), Expect(2) = 9e-025
Identities = 30/66 (45%), Positives = 47/66 (71%)
Frame = -2 / +3
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 369 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 548
Query: 247 FLAWFP 230
+WFP
Sbjct: 549 ICSWFP 566
Score = 49.6 bits (102), Expect(2) = 9e-025
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -2 / +3
Query: 730 EQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLN 626
E+E RG +LE +LSLRFFI+QYG+VYH++
Sbjct: 69 EEELQHIYSIRGRILETILSLRFFIFQYGVVYHMH 173
>gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F10_A002 3', mRNA sequence
Length = 673
Score = 115 bits (245), Expect = 1e-024
Identities = 46/86 (53%), Positives = 61/86 (70%)
Frame = -2 / +1
Query: 400 ILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVS 221
+LAF+PTGWGL+ IAQ +R I +W S+ ++AR YEI++G + P+A L+W P
Sbjct: 1 LLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGAFIMAPVALLSWLPGFQ 180
Query: 220 EFQPRMLFNQAFSRGLQISRILGGHK 143
E Q R+LFN+ FSRGLQISRIL G K
Sbjct: 181 EMQTRVLFNEGFSRGLQISRILTGKK 258
>gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii39c04, DNA sequence
Length = 589
Score = 114 bits (243), Expect = 2e-024
Identities = 43/61 (70%), Positives = 49/61 (80%)
Frame = -1 / +1
Query: 548 DCISWQEEIQCRVPACVPADQGADIHNVYLYYHNLDSNPTHDSSGHLCLHPCVHANWMGF 369
D IS QEE+QCRVPA VP DQG+ I+N Y + NL+SNP HD SGHLCLHPC HA+WMGF
Sbjct: 280 DRISGQEEVQCRVPARVPVDQGSHIYNFYSHRGNLNSNPWHDGSGHLCLHPCFHAHWMGF 459
Query: 368 A 366
A
Sbjct: 460 A 462
Score = 113 bits (241), Expect = 4e-024
Identities = 48/62 (77%), Positives = 53/62 (85%)
Frame = +3 / -2
Query: 363 RSKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMNISPLISRNTSWNSALNFLLPTD 542
RSKPHPVGM ARMQTKMS TVM GIAIKI + + V+N+ PLI+RNTSWNSALN LLPTD
Sbjct: 465 RSKPHPVGMKARMQTKMSRTVMPGIAIKITTMAVKVINMRPLINRNTSWNSALNLLLPTD 286
Query: 543 TV 548
TV
Sbjct: 285 TV 280
Score = 105 bits (224), Expect = 9e-022
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = +2 / -1
Query: 362 QKQTPSSWHERKDANKDVLNCHVWDCYQDYDNRDKRYEYQPLDQPEHKLELCTEFPPAN* 541
Q+QTPSS HE KDANKDV N H DCY DY + K Y+Y+ LDQPEH+LELCTE PPA+*
Sbjct: 466 QEQTPSSGHESKDANKDVQNRHARDCY*DYHDGCKSYKYETLDQPEHELELCTEPPPAH* 287
Query: 542 YSL 550
Y L
Sbjct: 286 YGL 278
>gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154083, DNA
sequence
Length = 690
Score = 113 bits (242), Expect = 3e-024
Identities = 49/75 (65%), Positives = 53/75 (70%)
Frame = -2 / -2
Query: 367 LLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQA 188
L I Q I LW S+ L R YE IMGL+LF PI FL+WFPFVSEFQ R+LFNQA
Sbjct: 503 LQIGQACSPLIRRTMLWDSIMELGRSYENIMGLILFLPIGFLSWFPFVSEFQTRLLFNQA 324
Query: 187 FSRGLQISRILGGHK 143
FSRGLQISRIL G K
Sbjct: 323 FSRGLQISRILAGQK 279
>gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211451, DNA
sequence
Length = 580
Score = 113 bits (241), Expect = 4e-024
Identities = 47/52 (90%), Positives = 48/52 (92%)
Frame = -2 / +2
Query: 256 PIAFLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE*VADA 101
PIAFLAWFPFVSEFQ RMLFNQAFSRGLQISRILGGHKKDR RNKE*+ DA
Sbjct: 2 PIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE*LRDA 157
Score = 104 bits (222), Expect = 2e-021
Identities = 43/60 (71%), Positives = 47/60 (78%)
Frame = +3 / -2
Query: 78 GQHYQAHAASATHSLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIG 257
G +AS +SLFR RSFL PPRIREICRPLLKAWLNSIL WNS+TNGNQAR A+G
Sbjct: 180 GVRRNLQSASRNYSLFRVPRSFLWPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMG 1
>gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512756, DNA
sequence
Length = 421
Score = 111 bits (236), Expect = 2e-023
Identities = 45/60 (75%), Positives = 49/60 (81%)
Frame = -2 / +3
Query: 322 LWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHK 143
LW S+ L R YE IMGL+LF PI FL+WFPFVSEFQ R+LFNQAFSRGLQISRIL G K
Sbjct: 33 LWDSIMELGRSYENIMGLILFLPIGFLSWFPFVSEFQTRLLFNQAFSRGLQISRILAGQK 212
>gb|BG054083.1|BG054083 OV2_3_C07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 567
Score = 86.3 bits (182), Expect(2) = 2e-023
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = -2 / +3
Query: 307 KALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDR 134
+ +AR Y+ MG ++F PI F +WFPFVS FQ R LFNQAFSRGL+IS IL G+K ++
Sbjct: 222 REIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKANQ 395
Score = 44.1 bits (90), Expect(2) = 2e-023
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -2 / +2
Query: 424 TVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSV 308
T+ D+F LAF+ TGW +L +A T + + + LW SV
Sbjct: 104 TIADLFASALAFIATGWCILCLAVTWKKVVKTLRLWDSV 220
>gb|CW265210.1|CW265210 104_734_11231740_116_35260_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231740, DNA
sequence
Length = 651
Score = 83.1 bits (175), Expect(2) = 1e-022
Identities = 38/90 (42%), Positives = 51/90 (56%)
Frame = -2 / -1
Query: 370 LLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQ 191
+L I Q +R I + +W ++ +A Y+ MG LLF PIA LAW P +S Q R+LFN+
Sbjct: 354 VLQIVQVLRPKIEYYAIWEPIQVIAHAYDYGMGSLLFFPIAVLAWMPVISAIQTRVLFNR 175
Query: 190 AFSRGLQISRILGGHKKDRAARNKE*VADA 101
AFSR LQI + K R N+ DA
Sbjct: 174 AFSRQLQIQPFIDVGKTKRR*HNRWFYMDA 85
Score = 44.6 bits (91), Expect(2) = 1e-022
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -2 / -1
Query: 427 MTVQDIFVCILAFMPTGWGLLLIA 356
+++ D+ +C LAF+PTGWGLLL++
Sbjct: 498 LSIMDLIICCLAFIPTGWGLLLVS 427
>gb|BE918244.1|BE918244 OV1_3_H04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 550
Score = 76.2 bits (160), Expect(2) = 2e-021
Identities = 27/60 (45%), Positives = 43/60 (71%)
Frame = -2 / +3
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 369 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 548
Score = 49.6 bits (102), Expect(2) = 2e-021
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -2 / +3
Query: 730 EQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLN 626
E+E RG +LE +LSLRFFI+QYG+VYH++
Sbjct: 69 EEELQHIYSIRGRILETILSLRFFIFQYGVVYHMH 173
>gb|BE918616.1|BE918616 OV1_4_B02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 553
Score = 76.2 bits (160), Expect(2) = 2e-021
Identities = 27/60 (45%), Positives = 43/60 (71%)
Frame = -2 / +3
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+ALAR Y+ G+++F PIA
Sbjct: 369 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIA 548
Score = 49.6 bits (102), Expect(2) = 2e-021
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -2 / +3
Query: 730 EQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLN 626
E+E RG +LE +LSLRFFI+QYG+VYH++
Sbjct: 69 EEELQHIYSIRGRILETILSLRFFIFQYGVVYHMH 173
>gb|CW334498.1|CW334498 104_833_11482533_148_36071_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482533, DNA
sequence
Length = 565
Score = 101 bits (215), Expect(2) = 2e-021
Identities = 40/76 (52%), Positives = 54/76 (71%)
Frame = -2 / +1
Query: 361 IAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFS 182
+A T + + + LW SV+ +AR Y+ MG ++F PI F +WFPFVS FQ R LFNQAFS
Sbjct: 193 LAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRFLFNQAFS 372
Query: 181 RGLQISRILGGHKKDR 134
RGL+IS IL G+K ++
Sbjct: 373 RGLEISLILAGNKANQ 420
Score = 24.0 bits (46), Expect(2) = 2e-021
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2 / +1
Query: 397 LAFMPTGWGLLLIAQT 350
LAF+ TGW +L ++ T
Sbjct: 4 LAFIATGWCILCVSTT 51
>gb|BE918163.1|BE918163 OV1_2_G01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 551
Score = 74.4 bits (156), Expect(2) = 6e-021
Identities = 26/60 (43%), Positives = 42/60 (70%)
Frame = -2 / +3
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+++ D+F ILAF+PTGWG++ IA + + +GLW +V+AL R Y+ G+++F PIA
Sbjct: 369 LSIGDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALXRLYDAGTGMIIFIPIA 548
Score = 49.6 bits (102), Expect(2) = 6e-021
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -2 / +3
Query: 730 EQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLN 626
E+E RG +LE +LSLRFFI+QYG+VYH++
Sbjct: 69 EEELQHIYSIRGRILETILSLRFFIFQYGVVYHMH 173
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 912,752,548
Number of Sequences: 832831
Number of extensions: 12232990
Number of successful extensions: 75785
Number of sequences better than 1.0e-020: 46
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 26376637404
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)