TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192679.2.1
(1274 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD219734.1|CD219734 CCC1_58_H08.g1_A007 Callus culture/c... 425 e-118
gb|BG412034.1|BG412034 OV2_37_B11.b1_A002 Ovary 2 (OV2) Sor... 398 e-109
gb|CF427286.1|CF427286 PH1_4_E06.g1_A002 Phosphorous-defici... 348 8e-095
gb|BG411721.1|BG411721 OV2_37_B11.g1_A002 Ovary 2 (OV2) Sor... 146 2e-065
gb|BG557854.1|BG557854 EM1_55_C04.b1_A002 Embryo 1 (EM1) So... 220 3e-056
gb|CD233529.1|CD233529 SS1_2_E02.g1_A012 Salt-stressed seed... 188 2e-046
gb|CW038890.1|CW038890 104_271_10505179_115_30388 Sorghum m... 92 2e-045
gb|CW038889.1|CW038889 104_271_10505179_114_30387 Sorghum m... 92 2e-041
gb|CW356579.1|CW356579 fsbb001f021l21f0 Sorghum methylation... 92 2e-038
gb|CD429950.1|CD429950 ETH1_16_E08.g1_A002 Ethylene-treated... 136 2e-038
gb|CW476073.1|CW476073 fsbb001f232m06k0 Sorghum methylation... 70 8e-037
gb|CF489433.1|CF489433 POL1_57_C05.g1_A002 Pollen Sorghum b... 136 4e-036
gb|CW293396.1|CW293396 104_773_11414632_116_35588_050 Sorgh... 78 2e-034
gb|CW293397.1|CW293397 104_773_11414632_148_35592_050 Sorgh... 78 3e-032
gb|CD233426.1|CD233426 SS1_2_E02.b1_A012 Salt-stressed seed... 117 3e-027
gb|CD225170.1|CD225170 CCC1_38_D07.g1_A007 Callus culture/c... 117 3e-025
gb|BG557683.1|BG557683 EM1_55_C04.g1_A002 Embryo 1 (EM1) So... 106 7e-024
gb|BG050940.1|BG050940 FM1_54_C02.b1_A003 Floral-Induced Me... 91 1e-022
gb|CF482862.1|CF482862 POL1_9_D04.g1_A002 Pollen Sorghum bi... 105 1e-021
>gb|CD219734.1|CD219734 CCC1_58_H08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_H08_A007 5', mRNA sequence
Length = 645
Score = 425 bits (923), Expect = e-118
Identities = 182/210 (86%), Positives = 190/210 (90%)
Frame = +2 / +2
Query: 59 PPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTG 238
PP VTGKMMPLSQ DFSPSQFT+SQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTG
Sbjct: 11 PPLVTGKMMPLSQPDFSPSQFTASQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTG 190
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
+KGAPF+V+GVEMANIRLVGMVN KVERTTDVTFTLDDGTGRLDFIRWVNDASDS ETAA
Sbjct: 191 EKGAPFVVDGVEMANIRLVGMVNGKVERTTDVTFTLDDGTGRLDFIRWVNDASDSSETAA 370
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+QNGMY+AVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIEN +LKAGSPAR
Sbjct: 371 VQNGMYVAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENTKLKAGSPAR 550
Query: 599 ISSSMGVSFSNGFXXXXXXXXXXXXXAPVT 688
SSSMGVS SNGF AP+T
Sbjct: 551 TSSSMGVSVSNGFSESSTPTSLKSNPAPLT 640
Score = 389 bits (843), Expect = e-107
Identities = 173/212 (81%), Positives = 176/212 (83%)
Frame = -3 / -1
Query: 693 PLVTGAGLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFNSMFSICIRTH*MKCSVTSLK 514
P V GAG DFKDVGVLDSLNPFE DTPIEEL+RAGLPAFN +FSICIRTH*MKCSVTSLK
Sbjct: 645 PPVNGAGFDFKDVGVLDSLNPFETDTPIEELVRAGLPAFNFVFSICIRTH*MKCSVTSLK 466
Query: 513 SVIGLIEKAVARFLSCSPLRLPMTAMYIPF*IAAVSKESEASFTHLMXXXXXXXXXXXXX 334
SVIGLIEKAVARFLS SPLRLPMTA YIPF* AAVS+ESEASFTHLM
Sbjct: 465 SVIGLIEKAVARFLS*SPLRLPMTATYIPF*TAAVSEESEASFTHLMKSRRPVPSSSVNV 286
Query: 333 XXXXXXTLALTIPTSRMLAISTPLTMNGAPLSPVPDCCASTTCFTVSGMVLDAPRILEGV 154
TL LTIPTSRMLAISTP T NGAP SPVPDC ASTTC TVSGMVLDAPRILEGV
Sbjct: 285 TSVVRSTLPLTIPTSRMLAISTPSTTNGAPFSPVPDC*ASTTCLTVSGMVLDAPRILEGV 106
Query: 153 VESAAAFWEEVNCDGEKSVWLNGIIFPVT*GG 58
VESAAAFWE VNCDGEKS WLNGIIFPVT GG
Sbjct: 105 VESAAAFWEAVNCDGEKSGWLNGIIFPVTSGG 10
Score = 298 bits (645), Expect(2) = 6e-080
Identities = 127/147 (86%), Positives = 134/147 (91%)
Frame = -2 / -3
Query: 688 GHRCWTGFQRCRCA*FTESI*E*HSHRRTDSCRTASL*FNVLYMHPNTLNEMQRNLIEIG 509
G CW FQRC CA*FTESI*+*HSHRRT SCRTASL*F VLYMHPNTLNEMQRNLIEI
Sbjct: 640 GQWCWI*FQRCWCA*FTESI*D*HSHRRTGSCRTASL*FRVLYMHPNTLNEMQRNLIEIS 461
Query: 508 YRPD*ESSSTLPLLQSLEASNDRNVHTILNSSSFKRI*SIIHPSDEIEAAGAIVEREGHI 329
YRPD*E SSTLPLL+SLEASNDR+VHTILNSSSF+RI*SIIHPSDEIEAAGA++ERE I
Sbjct: 460 YRPD*EGSSTLPLLKSLEASNDRDVHTILNSSSFRRI*SIIHPSDEIEAAGAVIERECDI 281
Query: 328 GRPLHLGIDHPHKSNVSHLDAIDDERS 248
GRPLHL +DHPHKSNVSHLDAI DERS
Sbjct: 280 GRPLHLAVDHPHKSNVSHLDAIHDERS 200
Score = 261 bits (564), Expect(2) = 3e-099
Identities = 102/118 (86%), Positives = 108/118 (91%)
Frame = +1 / +1
Query: 337 LHARRWHRPPRFHQMGE*CFRFF*NCCYSEWYVHCGHWKPQGTAREEACYCFLNQAYNRF 516
+HAR HRPPRFHQMGE*CFRFF*NCC S+WYV GHWKPQGT+REEACYC LNQAYN F
Sbjct: 289 IHAR*RHRPPRFHQMGE*CFRFF*NCCCSKWYVRRGHWKPQGTSREEACYCLLNQAYN*F 468
Query: 517 Q*GYAAFHSVCSDAYREH*IKGWQSCTNQFFYGSVILKWIQ*IKHTDIFEIQSSTGDQ 690
Q*GYAAFHSVCSDAYREH IKGWQSCTNQFFYGSV LKWIQ*IKHT+IFEI+SST D+
Sbjct: 469 Q*GYAAFHSVCSDAYREHEIKGWQSCTNQFFYGSVSLKWIQ*IKHTNIFEIKSSTIDR 642
Score = 216 bits (466), Expect(2) = 7e-056
Identities = 98/111 (88%), Positives = 102/111 (91%)
Frame = -1 / -2
Query: 686 SPVLDWISKMSVCLIH*IHLRMTLP*KN*FVQDCQPLIQCSLYASEHTE*NAA*PH*NRL 507
S VLD ISKM VCLIH*IHLR+TLP*KN FVQDCQPLI CSLYASEHTE*NAA*PH*N+L
Sbjct: 638 SMVLDLISKMLVCLIH*IHLRLTLP*KNWFVQDCQPLISCSLYASEHTE*NAA*PH*NQL 459
Query: 506 *A*LRKQ*HASSLAVP*GFQ*PQCTYHSE*QQFQKNLKHHSPI**NRGGRC 354
*A*LR+Q*HASSL VP*GFQ*P+ TYH E QQFQKNLKHHSPI**NRGGRC
Sbjct: 458 *A*LRRQ*HASSLEVP*GFQ*PRRTYHFEQQQFQKNLKHHSPI**NRGGRC 306
Score = 123 bits (263), Expect(2) = 2e-054
Identities = 52/59 (88%), Positives = 54/59 (91%)
Frame = +3 / +3
Query: 513 ISMRLRCISFSVFGCI*RTLN*RLAVLHESVLLWECHSQMDSVNQAHRHL*NPVQHR*P 689
ISMRLRCISFSVFGCI*RT N*RLAVLHE VLLWEC SQMDSVNQAH+HL*N +QH *P
Sbjct: 465 ISMRLRCISFSVFGCI*RTRN*RLAVLHEPVLLWECQSQMDSVNQAHQHL*NQIQHH*P 641
Score = 123 bits (263), Expect(2) = 3e-099
Identities = 51/74 (68%), Positives = 53/74 (71%)
Frame = +1 / +1
Query: 70 DREDDAVEPNRLLAVAVHLLPECRRRLHHAFQDARRVQXXXXXXXXXXXXXXVWHGRQGR 249
D EDDA+EP RLLAVAVH LPECRRRLHHAFQDAR VQ VWH R+GR
Sbjct: 22 DWEDDAIEPTRLLAVAVHRLPECRRRLHHAFQDARGVQHHAAHRQAGRRRSAVWHRREGR 201
Query: 250 SVHRQWRRDG*HST 291
SV R WRRDG*HST
Sbjct: 202 SVRRGWRRDG*HST 243
Score = 111 bits (237), Expect(2) = 2e-054
Identities = 48/66 (72%), Positives = 49/66 (74%)
Frame = +3 / +3
Query: 276 WLTFDLWGWSMPRWSGRPM*PSRSTMAPAASISSDG*MMXXXXXXXXXFRMVCTLRSLEA 455
WLTFDLWGWS RWSGRPM SRS APAASISSDG*MM F+MVCT RSLEA
Sbjct: 228 WLTFDLWGWSTARWSGRPMSHSRSMTAPAASISSDG*MMLQILLKLLLFKMVCTSRSLEA 407
Query: 456 SRDCKR 473
SRD KR
Sbjct: 408 SRDFKR 425
Score = 24.9 bits (48), Expect(2) = 6e-080
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2 / -3
Query: 94 AQRHHLPGHLRR 59
AQ HHLP H RR
Sbjct: 46 AQWHHLPSHERR 11
Score = 23.5 bits (45), Expect(2) = 7e-056
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1 / -2
Query: 293 QVEC*PSXXXXXXXXXXXRPCQTXXXXXXXXXXXAWC 183
QVEC*PS R CQT AWC
Sbjct: 245 QVEC*PSRRHPRRTERPSRRCQTAERRRPA*R*AAWC 135
>gb|BG412034.1|BG412034 OV2_37_B11.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 557
Score = 398 bits (863), Expect = e-109
Identities = 168/180 (93%), Positives = 175/180 (97%)
Frame = +2 / +1
Query: 59 PPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTG 238
PP VTGKMMPLSQ DFSPSQFT+SQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTG
Sbjct: 13 PPLVTGKMMPLSQPDFSPSQFTASQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTG 192
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
+KGAPF+V+GVEMANIRLVGMVN KVERTTDVTFTLDDGTGRLDFIRWVNDASDS ETAA
Sbjct: 193 EKGAPFVVDGVEMANIRLVGMVNGKVERTTDVTFTLDDGTGRLDFIRWVNDASDSSETAA 372
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+QNGMY+AVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIEN +LKAGSPAR
Sbjct: 373 VQNGMYVAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENTKLKAGSPAR 552
Score = 327 bits (708), Expect = 3e-088
Identities = 147/182 (80%), Positives = 150/182 (82%)
Frame = -3 / -1
Query: 603 LIRAGLPAFNSMFSICIRTH*MKCSVTSLKSVIGLIEKAVARFLSCSPLRLPMTAMYIPF 424
L+RAGLPAFN +FSICIRTH*MKCSVTSLKSVIGLIEKAVARFLS SPLRLPMTA YIPF
Sbjct: 557 LVRAGLPAFNFVFSICIRTH*MKCSVTSLKSVIGLIEKAVARFLS*SPLRLPMTATYIPF 378
Query: 423 *IAAVSKESEASFTHLMXXXXXXXXXXXXXXXXXXXTLALTIPTSRMLAISTPLTMNGAP 244
* AAVS+ESEASFTHLM TL LTIPTSRMLAISTP T NGAP
Sbjct: 377 *TAAVSEESEASFTHLMKSRRPVPSSSVNVTSVVRSTLPLTIPTSRMLAISTPSTTNGAP 198
Query: 243 LSPVPDCCASTTCFTVSGMVLDAPRILEGVVESAAAFWEEVNCDGEKSVWLNGIIFPVT* 64
SPVPDC ASTTC TVSGMVLDAPRILEGVVESAAAFWE VNCDGEKS WLNGIIFPVT
Sbjct: 197 FSPVPDC*ASTTCLTVSGMVLDAPRILEGVVESAAAFWEAVNCDGEKSGWLNGIIFPVTS 18
Query: 63 GG 58
GG
Sbjct: 17 GG 12
Score = 247 bits (533), Expect(2) = 1e-064
Identities = 105/117 (89%), Positives = 111/117 (94%)
Frame = -2 / -3
Query: 598 SCRTASL*FNVLYMHPNTLNEMQRNLIEIGYRPD*ESSSTLPLLQSLEASNDRNVHTILN 419
SCRTASL*F VLYMHPNTLNEMQRNLIEI YRPD*ESSSTLPLL+SLEASNDR+VHTILN
Sbjct: 552 SCRTASL*FRVLYMHPNTLNEMQRNLIEISYRPD*ESSSTLPLLKSLEASNDRDVHTILN 373
Query: 418 SSSFKRI*SIIHPSDEIEAAGAIVEREGHIGRPLHLGIDHPHKSNVSHLDAIDDERS 248
SSSF+RI*SIIHPSDEIEAAGA++ERE IGRPLHL +DHPHKSNVSHLDAI DERS
Sbjct: 372 SSSFRRI*SIIHPSDEIEAAGAVIERECDIGRPLHLAVDHPHKSNVSHLDAIHDERS 202
Score = 209 bits (450), Expect(2) = 1e-083
Identities = 79/89 (88%), Positives = 82/89 (92%)
Frame = +1 / +3
Query: 337 LHARRWHRPPRFHQMGE*CFRFF*NCCYSEWYVHCGHWKPQGTAREEACYCFLNQAYNRF 516
+HAR HRPPRFHQMGE*CFRFF*NCC S+WYV GHWKPQGT+REEACYCFLNQAYN F
Sbjct: 291 IHAR*RHRPPRFHQMGE*CFRFF*NCCCSKWYVRRGHWKPQGTSREEACYCFLNQAYN*F 470
Query: 517 Q*GYAAFHSVCSDAYREH*IKGWQSCTNQ 603
Q*GYAAFHSVCSDAYREH IKGWQSCTNQ
Sbjct: 471 Q*GYAAFHSVCSDAYREHEIKGWQSCTNQ 557
Score = 168 bits (362), Expect(2) = 1e-041
Identities = 75/82 (91%), Positives = 77/82 (93%)
Frame = -1 / -2
Query: 599 FVQDCQPLIQCSLYASEHTE*NAA*PH*NRL*A*LRKQ*HASSLAVP*GFQ*PQCTYHSE 420
FVQDCQPLI CSLYASEHTE*NAA*PH*N+L*A*LRKQ*HASSL VP*GFQ*P+ TYH E
Sbjct: 553 FVQDCQPLISCSLYASEHTE*NAA*PH*NQL*A*LRKQ*HASSLEVP*GFQ*PRRTYHFE 374
Query: 419 *QQFQKNLKHHSPI**NRGGRC 354
QQFQKNLKHHSPI**NRGGRC
Sbjct: 373 QQQFQKNLKHHSPI**NRGGRC 308
Score = 165 bits (355), Expect = 1e-039
Identities = 76/108 (70%), Positives = 77/108 (71%)
Frame = +3 / +2
Query: 276 WLTFDLWGWSMPRWSGRPM*PSRSTMAPAASISSDG*MMXXXXXXXXXFRMVCTLRSLEA 455
WLTFDLWGWS RWSGRPM SRS APAASISSDG*MM F+MVCT RSLEA
Sbjct: 230 WLTFDLWGWSTARWSGRPMSHSRSMTAPAASISSDG*MMLQILLKLLLFKMVCTSRSLEA 409
Query: 456 SRDCKRXXXXXXXXXXXXPISMRLRCISFSVFGCI*RTLN*RLAVLHE 599
SRD KR ISMRLRCISFSVFGCI*RT N*RLAVLHE
Sbjct: 410 SRDFKRGSVLLLSQSGL*LISMRLRCISFSVFGCI*RTRN*RLAVLHE 553
Score = 123 bits (263), Expect(2) = 1e-083
Identities = 51/74 (68%), Positives = 53/74 (71%)
Frame = +1 / +3
Query: 70 DREDDAVEPNRLLAVAVHLLPECRRRLHHAFQDARRVQXXXXXXXXXXXXXXVWHGRQGR 249
D EDDA+EP RLLAVAVH LPECRRRLHHAFQDAR VQ VWH R+GR
Sbjct: 24 DWEDDAIEPTRLLAVAVHRLPECRRRLHHAFQDARGVQHHAAHRQAGRRRSAVWHRREGR 203
Query: 250 SVHRQWRRDG*HST 291
SV R WRRDG*HST
Sbjct: 204 SVRRGWRRDG*HST 245
Score = 24.9 bits (48), Expect(2) = 1e-064
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2 / -3
Query: 94 AQRHHLPGHLRR 59
AQ HHLP H RR
Sbjct: 48 AQWHHLPSHERR 13
Score = 23.5 bits (45), Expect(2) = 1e-041
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1 / -2
Query: 293 QVEC*PSXXXXXXXXXXXRPCQTXXXXXXXXXXXAWC 183
QVEC*PS R CQT AWC
Sbjct: 247 QVEC*PSRRHPRRTERPSRRCQTAERRRPA*R*AAWC 137
>gb|CF427286.1|CF427286 PH1_4_E06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_E06_A002 5', mRNA sequence
Length = 532
Score = 348 bits (755), Expect = 8e-095
Identities = 151/174 (86%), Positives = 159/174 (91%)
Frame = +2 / +3
Query: 20 DPPICAPASLFAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLT 199
DP I + PP VTGKMMPLSQ DFSPSQFT+SQNAAADSTTPSKMRGASSTMPLT
Sbjct: 9 DPLISSAHPQAIPPPLVTGKMMPLSQPDFSPSQFTASQNAAADSTTPSKMRGASSTMPLT 188
Query: 200 VKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIR 379
VKQVVDAQQSGTG+KGAPF+V+GVEMANIRLVGMVN KVERTTDVTFTLDD +GRLDFIR
Sbjct: 189 VKQVVDAQQSGTGEKGAPFVVDGVEMANIRLVGMVNGKVERTTDVTFTLDDCSGRLDFIR 368
Query: 380 WVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFI 541
WVNDASDS ETAA+QNGMY+AVIGSL GLQERKRATAFSIRPITDFNEVTLHFI
Sbjct: 369 WVNDASDSSETAAVQNGMYVAVIGSL*GLQERKRATAFSIRPITDFNEVTLHFI 530
Score = 281 bits (608), Expect = 2e-074
Identities = 129/162 (79%), Positives = 130/162 (80%)
Frame = -3 / -1
Query: 543 *MKCSVTSLKSVIGLIEKAVARFLSCSPLRLPMTAMYIPF*IAAVSKESEASFTHLMXXX 364
*MKCSVTSLKSVIGLIEKAVARFLS SP RLPMTA YIPF* AAVS+ESEASFTHLM
Sbjct: 532 *MKCSVTSLKSVIGLIEKAVARFLS*SP*RLPMTATYIPF*TAAVSEESEASFTHLMKSR 353
Query: 363 XXXXXXXXXXXXXXXXTLALTIPTSRMLAISTPLTMNGAPLSPVPDCCASTTCFTVSGMV 184
TL LTIPTSRMLAISTP T NGAP SPVPDC ASTTC TVSGMV
Sbjct: 352 RPEQSSSVNVTSVVRSTLPLTIPTSRMLAISTPSTTNGAPFSPVPDC*ASTTCLTVSGMV 173
Query: 183 LDAPRILEGVVESAAAFWEEVNCDGEKSVWLNGIIFPVT*GG 58
LDAPRILEGVVESAAAFWE VNCDGEKS WLNGIIFPVT GG
Sbjct: 172 LDAPRILEGVVESAAAFWEAVNCDGEKSGWLNGIIFPVTSGG 47
Score = 202 bits (436), Expect(2) = 2e-051
Identities = 86/98 (87%), Positives = 92/98 (93%)
Frame = -2 / -3
Query: 541 NEMQRNLIEIGYRPD*ESSSTLPLLQSLEASNDRNVHTILNSSSFKRI*SIIHPSDEIEA 362
NEMQRNLIEI YRPD*ESSSTLPLL+SLEASNDR+VHTILNSSSF+RI SIIHPSDEIEA
Sbjct: 530 NEMQRNLIEISYRPD*ESSSTLPLLKSLEASNDRDVHTILNSSSFRRIXSIIHPSDEIEA 351
Query: 361 AGAIVEREGHIGRPLHLGIDHPHKSNVSHLDAIDDERS 248
AGA++ERE IGRPLHL +DHPHKSNVSHLDAI DERS
Sbjct: 350 AGAVIERECDIGRPLHLAVDHPHKSNVSHLDAIHDERS 237
Score = 149 bits (319), Expect(2) = 2e-067
Identities = 57/69 (82%), Positives = 60/69 (86%)
Frame = +1 / +2
Query: 337 LHARRWHRPPRFHQMGE*CFRFF*NCCYSEWYVHCGHWKPQGTAREEACYCFLNQAYNRF 516
+HAR RPPRFHQMGE*CF FF*NCC S+WYV GHWKP GT+REEACYCFLNQAYN F
Sbjct: 326 IHAR*LLRPPRFHQMGE*CFXFF*NCCCSKWYVRRGHWKPLGTSREEACYCFLNQAYN*F 505
Query: 517 Q*GYAAFHS 543
Q*GYAAFHS
Sbjct: 506 Q*GYAAFHS 532
Score = 129 bits (277), Expect(2) = 2e-067
Identities = 56/91 (61%), Positives = 60/91 (65%)
Frame = +1 / +2
Query: 19 RSSHLRTRKPIRRTSSGDREDDAVEPNRLLAVAVHLLPECRRRLHHAFQDARRVQXXXXX 198
RSSHL ++ D EDDA+EP RLLAVAVH LPECRRRLHHAFQDAR VQ
Sbjct: 8 RSSHLICPPASHSAAARDWEDDAIEPTRLLAVAVHRLPECRRRLHHAFQDARGVQHHAAH 187
Query: 199 XXXXXXXXXVWHGRQGRSVHRQWRRDG*HST 291
VWH R+GRSV R WRRDG*HST
Sbjct: 188 RQAGRRRSAVWHRREGRSVRRGWRRDG*HST 280
Score = 127 bits (272), Expect(2) = 1e-029
Identities = 59/89 (66%), Positives = 60/89 (67%)
Frame = +3 / +1
Query: 276 WLTFDLWGWSMPRWSGRPM*PSRSTMAPAASISSDG*MMXXXXXXXXXFRMVCTLRSLEA 455
WLTFDLWGWS RWSGRPM SRS APAASISSDG*MM F+MVCT RSLEA
Sbjct: 265 WLTFDLWGWSTARWSGRPMSHSRSMTAPAASISSDG*MMLXILLKLLLFKMVCTSRSLEA 444
Query: 456 SRDCKRXXXXXXXXXXXXPISMRLRCISF 542
SRD KR ISMRLRCISF
Sbjct: 445 SRDFKRGSVLLLSQSGL*LISMRLRCISF 531
Score = 114 bits (243), Expect(2) = 2e-025
Identities = 54/62 (87%), Positives = 56/62 (90%)
Frame = -1 / -2
Query: 542 E*NAA*PH*NRL*A*LRKQ*HASSLAVP*GFQ*PQCTYHSE*QQFQKNLKHHSPI**NRG 363
E*NAA*PH*N+L*A*LRKQ*HASSL VP GFQ*P+ TYH E QQFQKN KHHSPI**NRG
Sbjct: 531 E*NAA*PH*NQL*A*LRKQ*HASSLEVPRGFQ*PRRTYHFEQQQFQKNXKHHSPI**NRG 352
Query: 362 GR 357
GR
Sbjct: 351 GR 346
Score = 27.2 bits (53), Expect(2) = 1e-029
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 22 SSHLRTRKPIRRTS 63
SSHL TRKP RR S
Sbjct: 16 SSHLPTRKPFRRRS 57
Score = 25.4 bits (49), Expect(2) = 2e-051
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2 / -3
Query: 94 AQRHHLPGHLRRCGE*ACGCADGRI 20
AQ HHLP H RR G D RI
Sbjct: 83 AQWHHLPSHERRRNGLRVGR*DERI 9
Score = 23.5 bits (45), Expect(2) = 2e-025
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1 / -2
Query: 293 QVEC*PSXXXXXXXXXXXRPCQTXXXXXXXXXXXAWC 183
QVEC*PS R CQT AWC
Sbjct: 282 QVEC*PSRRHPRRTERPSRRCQTAERRRPA*R*AAWC 172
>gb|BG411721.1|BG411721 OV2_37_B11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 668
Score = 146 bits (313), Expect(3) = 2e-065
Identities = 60/67 (89%), Positives = 63/67 (94%)
Frame = +1 / +2
Query: 490 FLNQAYNRFQ*GYAAFHSVCSDAYREH*IKGWQSCTNQFFYGSVILKWIQ*IKHTDIFEI 669
FLNQAYN FQ*GYAAFHSVCSDAYREH IKGWQSCTNQFFYGSV LKWIQ*IKHT+IFEI
Sbjct: 2 FLNQAYN*FQ*GYAAFHSVCSDAYREHEIKGWQSCTNQFFYGSVSLKWIQ*IKHTNIFEI 181
Query: 670 QSSTGDQ 690
+SST D+
Sbjct: 182 KSSTIDR 202
Score = 144 bits (310), Expect(3) = 7e-058
Identities = 61/68 (89%), Positives = 63/68 (92%)
Frame = -3 / -2
Query: 693 PLVTGAGLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFNSMFSICIRTH*MKCSVTSLK 514
P V GAG DFKDVGVLDSLNPFE DTPIEEL+RAGLPAFN +FSICIRTH*MKCSVTSLK
Sbjct: 205 PPVNGAGFDFKDVGVLDSLNPFETDTPIEELVRAGLPAFNFVFSICIRTH*MKCSVTSLK 26
Query: 513 SVIGLIEK 490
SVIGLIEK
Sbjct: 25 SVIGLIEK 2
Score = 134 bits (288), Expect(3) = 5e-051
Identities = 57/66 (86%), Positives = 58/66 (87%)
Frame = -2 / -1
Query: 688 GHRCWTGFQRCRCA*FTESI*E*HSHRRTDSCRTASL*FNVLYMHPNTLNEMQRNLIEIG 509
G CW FQRC CA*FTESI*+*HSHRRT SCRTASL*F VLYMHPNTLNEMQRNLIEI
Sbjct: 200 GQWCWI*FQRCWCA*FTESI*D*HSHRRTGSCRTASL*FRVLYMHPNTLNEMQRNLIEIS 21
Query: 508 YRPD*E 491
YRPD*E
Sbjct: 20 YRPD*E 3
Score = 128 bits (275), Expect(2) = 9e-042
Identities = 59/66 (89%), Positives = 61/66 (92%)
Frame = -1 / -3
Query: 686 SPVLDWISKMSVCLIH*IHLRMTLP*KN*FVQDCQPLIQCSLYASEHTE*NAA*PH*NRL 507
S VLD ISKM VCLIH*IHLR+TLP*KN FVQDCQPLI CSLYASEHTE*NAA*PH*N+L
Sbjct: 198 SMVLDLISKMLVCLIH*IHLRLTLP*KNWFVQDCQPLISCSLYASEHTE*NAA*PH*NQL 19
Query: 506 *A*LRK 489
*A*LRK
Sbjct: 18 *A*LRK 1
Score = 123 bits (264), Expect(2) = 2e-051
Identities = 54/66 (81%), Positives = 56/66 (84%)
Frame = +3 / +1
Query: 513 ISMRLRCISFSVFGCI*RTLN*RLAVLHESVLLWECHSQMDSVNQAHRHL*NPVQHR*PA 692
ISMRLRCISFSVFGCI*RT N*RLAVLHE VLLWEC SQMDSVNQAH+HL*N +QH *P
Sbjct: 25 ISMRLRCISFSVFGCI*RTRN*RLAVLHEPVLLWECQSQMDSVNQAHQHL*NQIQHH*PV 204
Query: 693 GHPILI 710
LI
Sbjct: 205 EEVDLI 222
Score = 119 bits (255), Expect(2) = 4e-041
Identities = 51/73 (69%), Positives = 54/73 (73%)
Frame = +2 / +3
Query: 491 FSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXXXXX 670
FSIRPITDFNEVTLHFIQCVRMHIEN +LKAGSPAR SSSMGVS SNGF
Sbjct: 3 FSIRPITDFNEVTLHFIQCVRMHIENTKLKAGSPARTSSSMGVSVSNGFSESSTPTSLKS 182
Query: 671 XXAPVTSGSSDTD 709
AP+T G S +D
Sbjct: 183 NPAPLTGGGSGSD 221
Score = 117 bits (251), Expect(3) = 2e-065
Identities = 46/66 (69%), Positives = 59/66 (89%)
Frame = +2 / +3
Query: 698 SDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTID 877
SDTDL+ QVL+FF+EPANLESEHGVHVDEV K+FK LPK +I +AI +++D+G LYSTID
Sbjct: 216 SDTDLNKQVLHFFSEPANLESEHGVHVDEVYKQFKQLPKDKIKEAIAFHVDAGHLYSTID 395
Query: 878 EFHYKA 895
+FH+K+
Sbjct: 396 DFHFKS 413
Score = 100 bits (214), Expect(2) = 2e-051
Identities = 44/66 (66%), Positives = 52/66 (78%)
Frame = +3 / +1
Query: 702 ILICTRRS*IFLMNQRTSRVSMGCTLMKYSSGSNFCRRSRSRMLLITIWTRGVFTQQLMN 881
ILI T R IFL+NQRT RVS GC LMKY+S SN C+R RSR LL+++WT G+FTQQLM
Sbjct: 220 ILI*TSRCCIFLVNQRTLRVSTGCMLMKYTSSSNNCQRIRSRRLLLSMWTPGIFTQQLMT 399
Query: 882 STTRQL 899
ST+ QL
Sbjct: 400 STSSQL 417
Score = 96.8 bits (205), Expect(3) = 7e-058
Identities = 43/64 (67%), Positives = 50/64 (78%)
Frame = -2 / -1
Query: 892 LVVEFINC*VKTPRVHIVINSIRDLLLRQKFEPLEYFINVHPMLTLEVRWFIKKIQDLRV 713
L VE INC*VK P VH+ NS+ DL+L Q FE L YFIN+HP+LTL+VRWF KK+Q L V
Sbjct: 410 LEVEVINC*VKMPGVHMESNSLLDLILWQLFELLVYFINMHPVLTLKVRWFTKKMQHLLV 231
Query: 712 QISI 701
QISI
Sbjct: 230 QISI 219
Score = 85.4 bits (180), Expect(3) = 5e-051
Identities = 39/72 (54%), Positives = 48/72 (66%)
Frame = -1 / -3
Query: 911 FKSVKLPCSGIHQLLSKDAPSPYCNQ*HP*XXXXXXXXXXXVLHQRAPHAHSRGSLVH*K 732
F +KL SG HQLLSKDA P+ Q* P* +LHQ AP AHS+GSLVH*K
Sbjct: 429 FNRLKLT*SGSHQLLSKDARRPHGKQ*PP*SYPLAVV*TACILHQHAPRAHSQGSLVH*K 250
Query: 731 NSGPACADQYRM 696
N+ PAC++QY++
Sbjct: 249 NAAPACSNQYQI 214
Score = 70.7 bits (148), Expect(2) = 4e-041
Identities = 43/71 (60%), Positives = 47/71 (66%)
Frame = +1 / +2
Query: 703 Y*SAHAGPEFF**TSEPRE*AWGAR**STQAVQTFAEEADHGCY*LQYGLGASLLNN**I 882
Y* AG FF**TSEP E*A GA **S QAVQT A+ D G Y G ASLLNN**+
Sbjct: 221 Y*FEQAGAAFF**TSEP*E*ARGAC**SIQAVQTTAKG*DQGGYCFPCGRRASLLNN**L 400
Query: 883 PLQGNLTDLKV 915
PLQ + LK+
Sbjct: 401 PLQVSFNRLKL 433
Score = 63.8 bits (133), Expect(2) = 9e-042
Identities = 37/79 (46%), Positives = 42/79 (53%)
Frame = -3 / -2
Query: 933 CHFQQADLQIG*VAL*WNSSIVE*RRPESIL*SIASVICFFGKSLNRXXXXXXXXXXXXS 754
C + LQ L W SSIVE*R P S +IAS+I FG LN S
Sbjct: 451 CTLFRLQLQSVKADLKWKSSIVE*RCPASTWKAIASLILSFGSCLNCLYTSSTCTPCSLS 272
Query: 753 RFAGSLKKFRTCVCRSVSD 697
RFAGSLKK TC+ +SVSD
Sbjct: 271 RFAGSLKKCSTCLFKSVSD 215
Score = 26.3 bits (51), Expect(3) = 2e-065
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +2
Query: 926 KWQRTKYHL 952
+WQRTKYHL
Sbjct: 464 EWQRTKYHL 490
Score = 23.5 bits (45), Expect(3) = 7e-058
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -2
Query: 952 QVILSPLPF 926
QVILSPLPF
Sbjct: 490 QVILSPLPF 464
Score = 22.1 bits (42), Expect(3) = 5e-051
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / -3
Query: 951 K*YLVLCH 928
K*YLVLCH
Sbjct: 489 K*YLVLCH 466
>gb|BG557854.1|BG557854 EM1_55_C04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 345
Score = 220 bits (475), Expect = 3e-056
Identities = 96/113 (84%), Positives = 101/113 (89%)
Frame = +2 / +3
Query: 14 RIDPPICAPASLFAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMP 193
RIDP I + PP VTGKMMPLSQ DFSPSQFT+SQNAAADSTTPSKMRGASSTMP
Sbjct: 6 RIDPLISSAHPQAIPPPLVTGKMMPLSQPDFSPSQFTASQNAAADSTTPSKMRGASSTMP 185
Query: 194 LTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDD 352
LTVKQVVDAQQSGTG+KGAPF+V+GVEMANIRLVGMVN KVERTTDVTFTLDD
Sbjct: 186 LTVKQVVDAQQSGTGEKGAPFVVDGVEMANIRLVGMVNGKVERTTDVTFTLDD 344
Score = 179 bits (386), Expect = 7e-044
Identities = 79/99 (79%), Positives = 81/99 (81%)
Frame = -3 / -3
Query: 312 LALTIPTSRMLAISTPLTMNGAPLSPVPDCCASTTCFTVSGMVLDAPRILEGVVESAAAF 133
L LTIPTSRMLAISTP T NGAP SPVPDC ASTTC TVSGMVLDAPRILEGVVESAAAF
Sbjct: 304 LPLTIPTSRMLAISTPSTTNGAPFSPVPDC*ASTTCLTVSGMVLDAPRILEGVVESAAAF 125
Query: 132 WEEVNCDGEKSVWLNGIIFPVT*GGAANRLAGAQMGGSM 16
WE VNCDGEKS WLNGIIFPVT GG +M GS+
Sbjct: 124 WEAVNCDGEKSGWLNGIIFPVTSGGGMACGWADEMRGSI 8
Score = 129 bits (277), Expect(2) = 1e-039
Identities = 56/91 (61%), Positives = 60/91 (65%)
Frame = +1 / +2
Query: 19 RSSHLRTRKPIRRTSSGDREDDAVEPNRLLAVAVHLLPECRRRLHHAFQDARRVQXXXXX 198
RSSHL ++ D EDDA+EP RLLAVAVH LPECRRRLHHAFQDAR VQ
Sbjct: 11 RSSHLICPPASHSAAARDWEDDAIEPTRLLAVAVHRLPECRRRLHHAFQDARGVQHHAAH 190
Query: 199 XXXXXXXXXVWHGRQGRSVHRQWRRDG*HST 291
VWH R+GRSV R WRRDG*HST
Sbjct: 191 RQAGRRRSAVWHRREGRSVRRGWRRDG*HST 283
Score = 56.1 bits (116), Expect(2) = 1e-039
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = +3 / +1
Query: 276 WLTFDLWGWSMPRWSGRPM*PSRS 347
WLTFDLWGWS RWSGRPM SRS
Sbjct: 268 WLTFDLWGWSTARWSGRPMSHSRS 339
>gb|CD233529.1|CD233529 SS1_2_E02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_2_E02_A012 5', mRNA sequence
Length = 652
Score = 188 bits (404), Expect = 2e-046
Identities = 71/80 (88%), Positives = 73/80 (91%)
Frame = +1 / +3
Query: 382 GE*CFRFF*NCCYSEWYVHCGHWKPQGTAREEACYCFLNQAYNRFQ*GYAAFHSVCSDAY 561
GE*CFRFF NCC S+WYV GHWKPQGT+REEACYCFLNQAYN Q*GYAAFHSVCSDAY
Sbjct: 411 GE*CFRFFRNCCCSKWYVRRGHWKPQGTSREEACYCFLNQAYN*LQ*GYAAFHSVCSDAY 590
Query: 562 REH*IKGWQSCTNQFFYGSV 621
REH IKGWQSCTNQFFYGSV
Sbjct: 591 REHEIKGWQSCTNQFFYGSV 650
Score = 174 bits (375), Expect = 2e-042
Identities = 75/82 (91%), Positives = 78/82 (95%)
Frame = +2 / +1
Query: 377 RWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRM 556
R VNDASDS ETAA+QNGMY+AVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRM
Sbjct: 406 RRVNDASDSSETAAVQNGMYVAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRM 585
Query: 557 HIENIELKAGSPARISSSMGVS 622
HIEN +LKAGSPAR SSSMGVS
Sbjct: 586 HIENTKLKAGSPARTSSSMGVS 651
Score = 173 bits (372), Expect = 6e-042
Identities = 75/85 (88%), Positives = 80/85 (94%)
Frame = -2 / -2
Query: 622 *HSHRRTDSCRTASL*FNVLYMHPNTLNEMQRNLIEIGYRPD*ESSSTLPLLQSLEASND 443
*HSHRRT SCRTASL*F VLYMHPNTLNEMQRNLIE+ YRPD*ESSSTLPLL+SLEASND
Sbjct: 651 *HSHRRTGSCRTASL*FRVLYMHPNTLNEMQRNLIEVSYRPD*ESSSTLPLLKSLEASND 472
Query: 442 RNVHTILNSSSFKRI*SIIHPSDEI 368
R+VHTILNSSSF RI*SIIHP+ +I
Sbjct: 471 RDVHTILNSSSFGRI*SIIHPAKQI 397
Score = 164 bits (352), Expect = 3e-039
Identities = 73/80 (91%), Positives = 76/80 (95%)
Frame = -3 / -3
Query: 621 DTPIEELIRAGLPAFNSMFSICIRTH*MKCSVTSLKSVIGLIEKAVARFLSCSPLRLPMT 442
DTPIEEL+RAGLPAFN +FSICIRTH*MKCSVTSLKSVIGLIEKAVARFLS SPLRLPMT
Sbjct: 650 DTPIEELVRAGLPAFNFVFSICIRTH*MKCSVTSLKSVIGLIEKAVARFLS*SPLRLPMT 471
Query: 441 AMYIPF*IAAVSKESEASFT 382
A YIPF* AAVS+ESEASFT
Sbjct: 470 ATYIPF*TAAVSEESEASFT 411
Score = 156 bits (336), Expect = 5e-037
Identities = 70/81 (86%), Positives = 75/81 (92%)
Frame = -1 / -1
Query: 623 MTLP*KN*FVQDCQPLIQCSLYASEHTE*NAA*PH*NRL*A*LRKQ*HASSLAVP*GFQ* 444
+TLP*KN FVQDCQPLI CSLYASEHTE*NAA*PH*++L*A*LRKQ*HASSL VP*GFQ*
Sbjct: 652 LTLP*KNWFVQDCQPLISCSLYASEHTE*NAA*PH*SQL*A*LRKQ*HASSLEVP*GFQ* 473
Query: 443 PQCTYHSE*QQFQKNLKHHSP 381
P+ TYH E QQF+KNLKHHSP
Sbjct: 472 PRRTYHFEQQQFRKNLKHHSP 410
>gb|CW038890.1|CW038890 104_271_10505179_115_30388 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505179, DNA
sequence
Length = 734
Score = 91.8 bits (194), Expect(3) = 2e-045
Identities = 37/42 (88%), Positives = 42/42 (100%)
Frame = +2 / +3
Query: 164 KMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIR 289
+MRGASSTMPLTVKQVVDAQQSGTG+KGAPF+V+GVEMAN+R
Sbjct: 405 QMRGASSTMPLTVKQVVDAQQSGTGEKGAPFVVDGVEMANVR 530
Score = 90.0 bits (190), Expect(3) = 2e-045
Identities = 40/58 (68%), Positives = 44/58 (75%)
Frame = +2 / +2
Query: 8 SHRIDPPICAPASLFAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGAS 181
SH IDP I + PP VTGKMMPLSQ DFSPSQFT+SQNAAADSTTPSK+ +S
Sbjct: 140 SHPIDPLISSAHPQAIPPPLVTGKMMPLSQPDFSPSQFTASQNAAADSTTPSKVLSSS 313
Score = 86.8 bits (183), Expect(2) = 6e-035
Identities = 39/55 (70%), Positives = 40/55 (72%)
Frame = -3 / -3
Query: 171 RILEGVVESAAAFWEEVNCDGEKSVWLNGIIFPVT*GGAANRLAGAQMGGSMRCD 7
R LEGVVESAAAFWE VNCDGEKS WLNGIIFPVT GG +M GSM D
Sbjct: 303 RTLEGVVESAAAFWEAVNCDGEKSGWLNGIIFPVTSGGGMACGWADEMRGSMGWD 139
Score = 84.5 bits (178), Expect(3) = 3e-029
Identities = 36/53 (67%), Positives = 39/53 (73%)
Frame = +1 / +1
Query: 7 IASHRSSHLRTRKPIRRTSSGDREDDAVEPNRLLAVAVHLLPECRRRLHHAFQ 165
I SHRSSHL ++ D EDDA+EP RLLAVAVH LPECRRRLHHAFQ
Sbjct: 139 IPSHRSSHLICPPASHSAAARDWEDDAIEPTRLLAVAVHRLPECRRRLHHAFQ 297
Score = 83.1 bits (175), Expect(2) = 6e-035
Identities = 35/41 (85%), Positives = 35/41 (85%)
Frame = -3 / -2
Query: 288 RMLAISTPLTMNGAPLSPVPDCCASTTCFTVSGMVLDAPRI 166
R LAISTP T NGAP SPVPDC ASTTC TVSGMVLDAPRI
Sbjct: 529 RTLAISTPSTTNGAPFSPVPDC*ASTTCLTVSGMVLDAPRI 407
Score = 47.8 bits (98), Expect(3) = 3e-029
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = +1 / +2
Query: 166 DARRVQXXXXXXXXXXXXXXVWHGRQGRSVHRQWRRDG*HS 288
DAR VQ VWH R+GRSV R WRRDG* +
Sbjct: 407 DARGVQHHAAHRQAGRRRSAVWHRREGRSVRRGWRRDG*RT 529
Score = 46.9 bits (96), Expect(3) = 2e-045
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2 / +1
Query: 293 VGMVNAKVERTTDVTFTLDD 352
VGMVN KVERTTDVTFTLDD
Sbjct: 673 VGMVNGKVERTTDVTFTLDD 732
Score = 41.4 bits (84), Expect(3) = 3e-029
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 291 LWGWSMPRWSGRPM*PSRS 347
LWGWS RWSGRPM SRS
Sbjct: 671 LWGWSTARWSGRPMSHSRS 727
>gb|CW038889.1|CW038889 104_271_10505179_114_30387 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505179, DNA
sequence
Length = 681
Score = 91.8 bits (194), Expect(3) = 2e-041
Identities = 37/42 (88%), Positives = 42/42 (100%)
Frame = +2 / -2
Query: 164 KMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIR 289
+MRGASSTMPLTVKQVVDAQQSGTG+KGAPF+V+GVEMAN+R
Sbjct: 521 QMRGASSTMPLTVKQVVDAQQSGTGEKGAPFVVDGVEMANVR 396
Score = 83.1 bits (175), Expect(3) = 9e-037
Identities = 35/41 (85%), Positives = 35/41 (85%)
Frame = -3 / +1
Query: 288 RMLAISTPLTMNGAPLSPVPDCCASTTCFTVSGMVLDAPRI 166
R LAISTP T NGAP SPVPDC ASTTC TVSGMVLDAPRI
Sbjct: 397 RTLAISTPSTTNGAPFSPVPDC*ASTTCLTVSGMVLDAPRI 519
Score = 79.4 bits (167), Expect(3) = 2e-041
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +2 / -2
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRW 382
IRLVGMVN KVERTTDVTFTLDDGTGRLDFIRW
Sbjct: 263 IRLVGMVNGKVERTTDVTFTLDDGTGRLDFIRW 165
Score = 72.5 bits (152), Expect(3) = 9e-037
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = -2 / +3
Query: 382 PSDEIEAAGAIVEREGHIGRPLHLGIDHPHKSNV 281
PSDEIEAAGA++ERE IGRPLHL +DHPHKSN+
Sbjct: 165 PSDEIEAAGAVIERECDIGRPLHLAVDHPHKSNL 266
Score = 67.5 bits (141), Expect(3) = 6e-025
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +3 / -3
Query: 285 FDLWGWSMPRWSGRPM*PSRSTMAPAASISSDG 383
FDLWGWS RWSGRPM SRS APAASISSDG
Sbjct: 262 FDLWGWSTARWSGRPMSHSRSMTAPAASISSDG 164
Score = 47.8 bits (98), Expect(3) = 6e-025
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = +1 / -1
Query: 166 DARRVQXXXXXXXXXXXXXXVWHGRQGRSVHRQWRRDG*HS 288
DAR VQ VWH R+GRSV R WRRDG* +
Sbjct: 519 DARGVQHHAAHRQAGRRRSAVWHRREGRSVRRGWRRDG*RT 397
Score = 43.7 bits (89), Expect(3) = 2e-041
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1 / -3
Query: 115 AVHLLPECRRRLHHAFQ 165
AVH LPECRRRLHHAFQ
Sbjct: 679 AVHRLPECRRRLHHAFQ 629
Score = 43.2 bits (88), Expect(3) = 9e-037
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -3 / +2
Query: 171 RILEGVVESAAAFWEEVNC 115
R LEGVVESAAAFWE VNC
Sbjct: 623 RTLEGVVESAAAFWEAVNC 679
Score = 43.2 bits (88), Expect(3) = 6e-025
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2 / -1
Query: 113 SQFTSSQNAAADSTTPSKMRGAS 181
SQFT+SQNAAADSTTPSK+ +S
Sbjct: 681 SQFTASQNAAADSTTPSKVLSSS 613
>gb|CW356579.1|CW356579 fsbb001f021l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021l21, DNA
sequence
Length = 698
Score = 91.8 bits (194), Expect(2) = 2e-038
Identities = 37/42 (88%), Positives = 42/42 (100%)
Frame = +2 / -3
Query: 164 KMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIR 289
+MRGASSTMPLTVKQVVDAQQSGTG+KGAPF+V+GVEMAN+R
Sbjct: 156 QMRGASSTMPLTVKQVVDAQQSGTGEKGAPFVVDGVEMANVR 31
Score = 90.0 bits (190), Expect(2) = 2e-038
Identities = 40/58 (68%), Positives = 44/58 (75%)
Frame = +2 / -2
Query: 8 SHRIDPPICAPASLFAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGAS 181
SH IDP I + PP VTGKMMPLSQ DFSPSQFT+SQNAAADSTTPSK+ +S
Sbjct: 421 SHPIDPLISSAHPQAIPPPLVTGKMMPLSQPDFSPSQFTASQNAAADSTTPSKVLSSS 248
Score = 86.8 bits (183), Expect(2) = 6e-035
Identities = 39/55 (70%), Positives = 40/55 (72%)
Frame = -3 / +3
Query: 171 RILEGVVESAAAFWEEVNCDGEKSVWLNGIIFPVT*GGAANRLAGAQMGGSMRCD 7
R LEGVVESAAAFWE VNCDGEKS WLNGIIFPVT GG +M GSM D
Sbjct: 258 RTLEGVVESAAAFWEAVNCDGEKSGWLNGIIFPVTSGGGMACGWADEMRGSMGWD 422
Score = 84.5 bits (178), Expect(2) = 9e-024
Identities = 36/53 (67%), Positives = 39/53 (73%)
Frame = +1 / -1
Query: 7 IASHRSSHLRTRKPIRRTSSGDREDDAVEPNRLLAVAVHLLPECRRRLHHAFQ 165
I SHRSSHL ++ D EDDA+EP RLLAVAVH LPECRRRLHHAFQ
Sbjct: 422 IPSHRSSHLICPPASHSAAARDWEDDAIEPTRLLAVAVHRLPECRRRLHHAFQ 264
Score = 83.1 bits (175), Expect(2) = 6e-035
Identities = 35/41 (85%), Positives = 35/41 (85%)
Frame = -3 / +2
Query: 288 RMLAISTPLTMNGAPLSPVPDCCASTTCFTVSGMVLDAPRI 166
R LAISTP T NGAP SPVPDC ASTTC TVSGMVLDAPRI
Sbjct: 32 RTLAISTPSTTNGAPFSPVPDC*ASTTCLTVSGMVLDAPRI 154
Score = 47.8 bits (98), Expect(2) = 9e-024
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = +1 / -2
Query: 166 DARRVQXXXXXXXXXXXXXXVWHGRQGRSVHRQWRRDG*HS 288
DAR VQ VWH R+GRSV R WRRDG* +
Sbjct: 154 DARGVQHHAAHRQAGRRRSAVWHRREGRSVRRGWRRDG*RT 32
>gb|CD429950.1|CD429950 ETH1_16_E08.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_E08_A002 5', mRNA sequence
Length = 673
Score = 136 bits (292), Expect(3) = 2e-038
Identities = 52/115 (45%), Positives = 80/115 (69%)
Frame = +2 / +1
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D + F ++GVE++ +RLVG + KV R TDV FTL DGTG++D RW N++SD+ E A
Sbjct: 157 DDKSNFAIDGVEVSTVRLVGRMLNKVHRVTDVQFTLHDGTGKIDVNRWENESSDAKEMAD 336
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKA 583
+ +G Y+ V G LKG Q ++ A+S+R +TDFNE+ HF+ C+++H+++ KA
Sbjct: 337 VNDGDYVIVNGGLKGFQGKRHIVAYSVRRVTDFNEIPHHFLHCIQVHLDHTRPKA 501
Score = 37.3 bits (75), Expect(3) = 2e-038
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2 / +1
Query: 125 SSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQS 229
S A +S+ SK R A + +PLTVKQ++DA Q+
Sbjct: 49 SQSTAVPESSGLSKGRSAQTLLPLTVKQIMDAAQA 153
Score = 30.4 bits (60), Expect(3) = 2e-038
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2 / +1
Query: 722 VLNFFNEPANLESEHGVH 775
V++ FN+PA ++ EHG+H
Sbjct: 619 VMSVFNDPAAIDREHGLH 672
>gb|CW476073.1|CW476073 fsbb001f232m06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f232m06, DNA
sequence
Length = 590
Score = 69.8 bits (146), Expect(4) = 8e-037
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +2 / +3
Query: 491 FSIRPITDFNEVTLHFIQCVRMHIENIELKAGS 589
FS RPITDFNEVTLHFIQCVRMHIEN +LK +
Sbjct: 372 FSFRPITDFNEVTLHFIQCVRMHIENTKLKVST 470
Score = 66.6 bits (139), Expect(4) = 8e-037
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +1 / +2
Query: 424 EWYVHCGHWKPQGTAREEACYCFLNQ 501
+WYV GHWKPQGT+REEACYCFLNQ
Sbjct: 227 KWYVRRGHWKPQGTSREEACYCFLNQ 304
Score = 63.8 bits (133), Expect(4) = 1e-029
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +1 / +2
Query: 499 QAYNRFQ*GYAAFHSVCSDAYREH*IKGW 585
QAYN FQ*GYAAFHSVCSDAYREH IKG+
Sbjct: 380 QAYN*FQ*GYAAFHSVCSDAYREHEIKGF 466
Score = 63.8 bits (133), Expect(4) = 4e-030
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = -2 / -1
Query: 583 SL*FNVLYMHPNTLNEMQRNLIEIGYRPD*ES 488
+L*F VLYMHPNTLNEMQRNLIEI YRP+ +S
Sbjct: 464 NL*FRVLYMHPNTLNEMQRNLIEISYRPERKS 369
Score = 62.0 bits (129), Expect(4) = 1e-029
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2 / +3
Query: 401 SFETAAIQNGMYIAVIGSLKGLQERKRATAFSIR 502
SF +NGMY+AVIGSLKGLQERKRATAFSIR
Sbjct: 204 SFSLWLSRNGMYVAVIGSLKGLQERKRATAFSIR 305
Score = 57.9 bits (120), Expect(4) = 7e-028
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -1 / -3
Query: 584 QPLIQCSLYASEHTE*NAA*PH*NRL*A* 498
+PLI CSLYASEHTE*NAA*PH*N+L*A*
Sbjct: 465 KPLISCSLYASEHTE*NAA*PH*NQL*A* 379
Score = 56.1 bits (116), Expect(4) = 4e-030
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -2 / -1
Query: 502 PD*ESSSTLPLLQSLEASNDRNVHTI 425
PD*ESSSTLPLL+SLEASNDR+VHTI
Sbjct: 305 PD*ESSSTLPLLKSLEASNDRDVHTI 228
Score = 54.7 bits (113), Expect(4) = 7e-028
Identities = 24/26 (92%), Positives = 24/26 (92%)
Frame = -3 / -2
Query: 501 LIEKAVARFLSCSPLRLPMTAMYIPF 424
LIEKAVARFLS SPLRLPMTA YIPF
Sbjct: 304 LIEKAVARFLS*SPLRLPMTATYIPF 227
Score = 40.0 bits (81), Expect(4) = 8e-037
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 574 IKGWQSCTNQFFYGS 618
I GWQSCTNQFFYGS
Sbjct: 546 IIGWQSCTNQFFYGS 590
Score = 35.4 bits (71), Expect(4) = 4e-030
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = -2 / -3
Query: 427 ILNSSSFKRI*SIIHPSDE 371
+LNSSSF+RI*SIIHP+ +
Sbjct: 117 LLNSSSFRRI*SIIHPAKQ 61
Score = 35.4 bits (71), Expect(4) = 8e-037
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1 / +3
Query: 382 GE*CFRFF*NCCYS 423
GE*CFRFF*NCC S
Sbjct: 72 GE*CFRFF*NCCCS 113
Score = 35.0 bits (70), Expect(4) = 7e-028
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1 / -2
Query: 425 SE*QQFQKNLKHHSP 381
+E QQFQKNLKHHSP
Sbjct: 115 TEQQQFQKNLKHHSP 71
Score = 33.6 bits (67), Expect(4) = 7e-028
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -1 / -2
Query: 617 LP*KN*FVQDCQPLI 573
LP*KN FVQDCQP+I
Sbjct: 589 LP*KNWFVQDCQPMI 545
Score = 33.6 bits (67), Expect(4) = 4e-030
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / -1
Query: 618 TPIEELIRAGLPAFN 574
TPIEEL+RAGLPA++
Sbjct: 590 TPIEELVRAGLPAYD 546
Score = 30.9 bits (61), Expect(4) = 1e-029
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3 / +2
Query: 579 RLAVLHESVLLWE 617
RLAVLHE VLLWE
Sbjct: 551 RLAVLHEPVLLWE 589
Score = 30.4 bits (60), Expect(4) = 1e-029
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2 / +1
Query: 377 RWVNDASDSFETAAIQ 424
R VNDASDS ETAA+Q
Sbjct: 67 RRVNDASDSSETAAVQ 114
>gb|CF489433.1|CF489433 POL1_57_C05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_C05_A002 5', mRNA sequence
Length = 706
Score = 136 bits (292), Expect(2) = 4e-036
Identities = 52/115 (45%), Positives = 80/115 (69%)
Frame = +2 / +2
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D + F ++GVE++ +RLVG + KV R TDV FTL DGTG++D RW N++SD+ E A
Sbjct: 266 DDKSNFAIDGVEVSTVRLVGRMLNKVHRVTDVQFTLHDGTGKIDVNRWENESSDAKEMAD 445
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKA 583
+ +G Y+ V G LKG Q ++ A+S+R +TDFNE+ HF+ C+++H+++ KA
Sbjct: 446 VNDGDYVIVNGGLKGFQGKRHIVAYSVRRVTDFNEIPHHFLHCIQVHLDHTRPKA 610
Score = 37.3 bits (75), Expect(2) = 4e-036
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2 / +2
Query: 125 SSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQS 229
S A +S+ SK R A + +PLTVKQ++DA Q+
Sbjct: 158 SQSTAVPESSGLSKGRSAQTLLPLTVKQIMDAAQA 262
>gb|CW293396.1|CW293396 104_773_11414632_116_35588_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414632, DNA
sequence
Length = 642
Score = 78.0 bits (164), Expect(3) = 2e-034
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +1 / +1
Query: 574 IKGWQSCTNQFFYGSVILKWIQ*IKHTDIFEIQSS 678
I GWQSCTNQFFYGSV LKWIQ*IKHT+IFEI+SS
Sbjct: 253 IIGWQSCTNQFFYGSVSLKWIQ*IKHTNIFEIKSS 357
Score = 75.3 bits (158), Expect(3) = 1e-031
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = -3 / -1
Query: 675 GLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFN 574
G DFKDVGVLDSLNPFE DTPIEEL+RAGLPA++
Sbjct: 354 GFDFKDVGVLDSLNPFETDTPIEELVRAGLPAYD 253
Score = 71.6 bits (150), Expect(3) = 7e-028
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = -1 / -2
Query: 680 VLDWISKMSVCLIH*IHLRMTLP*KN*FVQDCQPLI 573
+LD ISKM VCLIH*IHLR+TLP*KN FVQDCQP+I
Sbjct: 359 LLDLISKMLVCLIH*IHLRLTLP*KNWFVQDCQPMI 252
Score = 70.7 bits (148), Expect(3) = 8e-027
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +3 / +3
Query: 579 RLAVLHESVLLWECHSQMDSVNQAHRHL*NPVQ 677
RLAVLHE VLLWEC SQMDSVNQAH+HL*N +Q
Sbjct: 258 RLAVLHEPVLLWECQSQMDSVNQAHQHL*NQIQ 356
Score = 69.8 bits (146), Expect(3) = 2e-034
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +2 / +1
Query: 491 FSIRPITDFNEVTLHFIQCVRMHIENIELKAGS 589
FS RPITDFNEVTLHFIQCVRMHIEN +LK +
Sbjct: 79 FSFRPITDFNEVTLHFIQCVRMHIENTKLKVST 177
Score = 63.8 bits (133), Expect(3) = 1e-031
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = -2 / -1
Query: 583 SL*FNVLYMHPNTLNEMQRNLIEIGYRPD*ES 488
+L*F VLYMHPNTLNEMQRNLIEI YRP+ +S
Sbjct: 171 NL*FRVLYMHPNTLNEMQRNLIEISYRPERKS 76
Score = 63.8 bits (133), Expect(3) = 8e-027
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +1 / +3
Query: 499 QAYNRFQ*GYAAFHSVCSDAYREH*IKGW 585
QAYN FQ*GYAAFHSVCSDAYREH IKG+
Sbjct: 87 QAYN*FQ*GYAAFHSVCSDAYREHEIKGF 173
Score = 57.9 bits (120), Expect(3) = 7e-028
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -1 / -3
Query: 584 QPLIQCSLYASEHTE*NAA*PH*NRL*A* 498
+PLI CSLYASEHTE*NAA*PH*N+L*A*
Sbjct: 172 KPLISCSLYASEHTE*NAA*PH*NQL*A* 86
Score = 38.6 bits (78), Expect(3) = 2e-034
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2 / +2
Query: 698 SDTDLHTQVLNFFNEPANL 754
SDTDL+ QVL+FF+EPANL
Sbjct: 461 SDTDLNKQVLHFFSEPANL 517
Score = 37.3 bits (75), Expect(3) = 1e-031
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = -1 / -2
Query: 752 GSLVH*KNSGPACADQYRM 696
GSLVH*KN+ PAC++QY++
Sbjct: 515 GSLVH*KNAAPACSNQYQI 459
Score = 34.5 bits (69), Expect(3) = 7e-028
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2 / -3
Query: 757 LEVRWFIKKIQDLRVQISI 701
L+VRWF KK+Q L VQISI
Sbjct: 520 LQVRWFTKKMQHLLVQISI 464
Score = 25.8 bits (50), Expect(3) = 8e-027
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / +3
Query: 702 ILICTRRS*IFLMNQRTSRV 761
ILI T R IFL+NQRT ++
Sbjct: 465 ILI*TSRCCIFLVNQRTCKL 524
>gb|CW293397.1|CW293397 104_773_11414632_148_35592_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414632, DNA
sequence
Length = 691
Score = 78.0 bits (164), Expect(3) = 3e-032
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +1 / -3
Query: 574 IKGWQSCTNQFFYGSVILKWIQ*IKHTDIFEIQSS 678
I GWQSCTNQFFYGSV LKWIQ*IKHT+IFEI+SS
Sbjct: 509 IIGWQSCTNQFFYGSVSLKWIQ*IKHTNIFEIKSS 405
Score = 75.3 bits (158), Expect(3) = 2e-029
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = -3 / +3
Query: 675 GLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFN 574
G DFKDVGVLDSLNPFE DTPIEEL+RAGLPA++
Sbjct: 408 GFDFKDVGVLDSLNPFETDTPIEELVRAGLPAYD 509
Score = 71.6 bits (150), Expect(3) = 1e-026
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = -1 / +1
Query: 680 VLDWISKMSVCLIH*IHLRMTLP*KN*FVQDCQPLI 573
+LD ISKM VCLIH*IHLR+TLP*KN FVQDCQP+I
Sbjct: 403 LLDLISKMLVCLIH*IHLRLTLP*KNWFVQDCQPMI 510
Score = 70.7 bits (148), Expect(3) = 1e-025
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +3 / -2
Query: 579 RLAVLHESVLLWECHSQMDSVNQAHRHL*NPVQ 677
RLAVLHE VLLWEC SQMDSVNQAH+HL*N +Q
Sbjct: 504 RLAVLHEPVLLWECQSQMDSVNQAHQHL*NQIQ 406
Score = 62.0 bits (129), Expect(3) = 3e-032
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +1 / -2
Query: 499 QAYNRFQ*GYAAFHSVCSDAYREH*IKGW 585
QAYN F+*GYAAFHSVCSDAYREH IKG+
Sbjct: 675 QAYN*FK*GYAAFHSVCSDAYREHEIKGF 589
Score = 59.7 bits (124), Expect(3) = 1e-025
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2 / -3
Query: 494 SIRPITDFNEVTLHFIQCVRMHIENIELKAGS 589
S RPITD NEVTLHFIQCVRMHIEN + K +
Sbjct: 680 SFRPITDSNEVTLHFIQCVRMHIENTK*KVST 585
Score = 57.0 bits (118), Expect(3) = 2e-029
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = -2 / +3
Query: 583 SL*FNVLYMHPNTLNEMQRNLIEIGYRPD 497
+L F VLYMHPNTLNEMQRNLI I YRP+
Sbjct: 591 NLLFRVLYMHPNTLNEMQRNLI*ISYRPE 677
Score = 53.8 bits (111), Expect(3) = 1e-026
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = -1 / +2
Query: 584 QPLIQCSLYASEHTE*NAA*PH*NRL*A* 498
+P I CSLYASEHTE*NAA*PH N+L*A*
Sbjct: 590 KPFISCSLYASEHTE*NAA*PHLNQL*A* 676
Score = 38.6 bits (78), Expect(3) = 3e-032
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2 / -1
Query: 698 SDTDLHTQVLNFFNEPANL 754
SDTDL+ QVL+FF+EPANL
Sbjct: 301 SDTDLNKQVLHFFSEPANL 245
Score = 37.3 bits (75), Expect(3) = 2e-029
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = -1 / +1
Query: 752 GSLVH*KNSGPACADQYRM 696
GSLVH*KN+ PAC++QY++
Sbjct: 247 GSLVH*KNAAPACSNQYQI 303
Score = 34.5 bits (69), Expect(3) = 1e-026
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2 / +2
Query: 757 LEVRWFIKKIQDLRVQISI 701
L+VRWF KK+Q L VQISI
Sbjct: 242 LQVRWFTKKMQHLLVQISI 298
Score = 25.8 bits (50), Expect(3) = 1e-025
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / -2
Query: 702 ILICTRRS*IFLMNQRTSRV 761
ILI T R IFL+NQRT ++
Sbjct: 297 ILI*TSRCCIFLVNQRTCKL 238
>gb|CD233426.1|CD233426 SS1_2_E02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_2_E02_A012 3', mRNA sequence
Length = 628
Score = 117 bits (251), Expect(2) = 3e-027
Identities = 46/66 (69%), Positives = 59/66 (89%)
Frame = +2 / +2
Query: 698 SDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTID 877
SDTDL+ QVL+FF+EPANLESEHGVHVDEV K+FK LPK +I +AI +++D+G LYSTID
Sbjct: 41 SDTDLNKQVLHFFSEPANLESEHGVHVDEVYKQFKQLPKDKIKEAIAFHVDAGHLYSTID 220
Query: 878 EFHYKA 895
+FH+K+
Sbjct: 221 DFHFKS 238
Score = 96.8 bits (205), Expect(3) = 6e-021
Identities = 43/64 (67%), Positives = 50/64 (78%)
Frame = -2 / -1
Query: 892 LVVEFINC*VKTPRVHIVINSIRDLLLRQKFEPLEYFINVHPMLTLEVRWFIKKIQDLRV 713
L VE INC*VK P VH+ NS+ DL+L Q FE L YFIN+HP+LTL+VRWF KK+Q L V
Sbjct: 235 LEVEVINC*VKMPGVHMESNSLLDLILWQLFELLVYFINMHPVLTLKVRWFTKKMQHLLV 56
Query: 712 QISI 701
QISI
Sbjct: 55 QISI 44
Score = 26.3 bits (51), Expect(2) = 3e-027
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +1
Query: 926 KWQRTKYHL 952
+WQRTKYHL
Sbjct: 289 EWQRTKYHL 315
Score = 24.4 bits (47), Expect(3) = 6e-021
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / -1
Query: 1049 DTNQLVDTRY 1020
D NQLVDTRY
Sbjct: 565 DENQLVDTRY 536
Score = 23.5 bits (45), Expect(3) = 6e-021
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / -2
Query: 952 QVILSPLPF 926
QVILSPLPF
Sbjct: 315 QVILSPLPF 289
>gb|CD225170.1|CD225170 CCC1_38_D07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_38_D07_A007 5', mRNA sequence
Length = 681
Score = 117 bits (251), Expect = 3e-025
Identities = 47/118 (39%), Positives = 74/118 (62%)
Frame = +2 / +3
Query: 218 AQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDAS 397
A TG ++GV+ N+ ++G V + V V+FTLDDGTGR+ +RW+ D
Sbjct: 225 AAADATGGGDPVIYIDGVDATNVWILGRVVSVVNMEAGVSFTLDDGTGRIPLVRWITDDI 404
Query: 398 DSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENI 571
D+ E + +QNG+Y+ V +L G + ++ A SIRP+T+FNEV LHFI+ + +H+ N+
Sbjct: 405 DAKEVSFVQNGLYLKVQVTLVGFRAKQHGFARSIRPVTNFNEVVLHFIESMYVHLVNV 578
>gb|BG557683.1|BG557683 EM1_55_C04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 106 bits (226), Expect(2) = 7e-024
Identities = 41/59 (69%), Positives = 53/59 (89%)
Frame = +2 / +3
Query: 719 QVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
QVL+FF+EPANLESEHGVHVDEV K+FK LPK +I +AI +++D+G LYSTID+FH+K+
Sbjct: 3 QVLHFFSEPANLESEHGVHVDEVYKQFKQLPKDKIKEAIAFHVDAGHLYSTIDDFHFKS 179
Score = 26.3 bits (51), Expect(2) = 7e-024
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / +2
Query: 926 KWQRTKYHL 952
+WQRTKYHL
Sbjct: 230 EWQRTKYHL 256
>gb|BG050940.1|BG050940 FM1_54_C02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 500
Score = 91.3 bits (193), Expect(2) = 1e-022
Identities = 37/75 (49%), Positives = 53/75 (70%)
Frame = +2 / +2
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D + F ++GVE++ +RLVG + KV+R TDV FTL DGTG++D RW N++SD+ E A
Sbjct: 272 DDKSNFAIDGVEVSTVRLVGRMLNKVQRVTDVQFTLHDGTGKIDVNRWENESSDAKEMAD 451
Query: 419 IQNGMYIAVIGSLKG 463
+ +G Y+ V G LKG
Sbjct: 452 VNDGDYVIVNGGLKG 496
Score = 37.3 bits (75), Expect(2) = 1e-022
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2 / +2
Query: 125 SSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQS 229
S A +S+ SK R A + +PLTVKQ++DA Q+
Sbjct: 164 SQSTAVPESSGLSKGRSAQTLLPLTVKQIMDAAQA 268
>gb|CF482862.1|CF482862 POL1_9_D04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_9_D04_A002 5', mRNA sequence
Length = 725
Score = 105 bits (225), Expect = 1e-021
Identities = 41/94 (43%), Positives = 64/94 (68%)
Frame = +2 / +1
Query: 290 LVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQ 469
++G V + V V+FTLDDGTGR+ +RW+ D D+ E + +QNG+Y+ V +L G +
Sbjct: 331 ILGRVVSVVNMEAGVSFTLDDGTGRIPLVRWITDDIDAKEVSFVQNGLYLKVQVTLVGFR 510
Query: 470 ERKRATAFSIRPITDFNEVTLHFIQCVRMHIENI 571
++ A SIRP+T+FNEV LHFI+ + +H+ N+
Sbjct: 511 AKQHGFARSIRPVTNFNEVVLHFIESMYVHLVNV 612
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,383,988,998
Number of Sequences: 832831
Number of extensions: 18717429
Number of successful extensions: 94066
Number of sequences better than 1.0e-020: 21
length of database: 163,786,556
effective HSP length: 56
effective length of database: 117,148,020
effective search space used: 43110471360
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)