TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF488144.1|CF488144 POL1_48_B12.b1_A002 Pollen Sorghum b... 341 e-107
gb|CD209409.1|CD209409 HS1_42_A06.b1_A012 Heat-shocked seed... 272 2e-084
gb|BZ412852.1|BZ412852 117d8_ctg2 Subclones from BAC clones... 231 3e-075
gb|CL180433.1|CL180433 104_390_10896013_116_31930_157 Sorgh... 231 3e-075
gb|CL180434.1|CL180434 104_390_10896013_148_31929_157 Sorgh... 231 1e-073
gb|BF421751.1|BF421751 FM1_16_B09.g1_A003 Floral-Induced Me... 233 7e-065
gb|CW236997.1|CW236997 104_693_11215924_116_37513_012 Sorgh... 209 4e-062
gb|CD426164.1|CD426164 SA1_19_E05.b1_A002 Salicylic acid-tr... 171 1e-057
gb|CW387593.1|CW387593 fsbb001f072a02f0 Sorghum methylation... 209 4e-053
gb|CW105650.1|CW105650 104_475_11012989_116_34454_063 Sorgh... 96 6e-034
gb|CW236998.1|CW236998 104_693_11215924_148_37518_012 Sorgh... 84 3e-029
gb|BF481081.1|BF481081 FM1_16_B09.b1_A003 Floral-Induced Me... 109 4e-023
>gb|CF488144.1|CF488144 POL1_48_B12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_B12_A002 3', mRNA sequence
Length = 703
Score = 341 bits (740), Expect(3) = e-107
Identities = 147/155 (94%), Positives = 149/155 (96%)
Frame = +1 / +3
Query: 10 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDEVA 189
KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDEVA
Sbjct: 51 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDEVA 230
Query: 190 RRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKV 369
RRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKV
Sbjct: 231 RRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKV 410
Query: 370 QKSVSPSDIEKHEKWMAEFGSA*DLGHLLGSCSNI 474
QKSVSP+DIEKHEKWM EFGSA* LGH L S S +
Sbjct: 411 QKSVSPADIEKHEKWMTEFGSA*YLGHPLRSSSTL 515
Score = 314 bits (681), Expect(3) = e-100
Identities = 127/149 (85%), Positives = 133/149 (89%)
Frame = -1 / -3
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGL 277
K M EVSG PKLSHPLLML YV RRDTLL+LHQ LHKVAHGH VLGYLVL*HVLDL+AGL
Sbjct: 497 KGMTEVSGGPKLSHPLLMLFYVCRRDTLLDLHQGLHKVAHGHWVLGYLVL*HVLDLIAGL 318
Query: 276 ACYLAPHAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKW 97
ACYLAPH +H* I AN+CQIISTIAFCPPSNL+DVNI YLNCSKINVDKCLSTFKIWKW
Sbjct: 317 ACYLAPHTVH*SITANICQIISTIAFCPPSNLIDVNIRSYLNCSKINVDKCLSTFKIWKW 138
Query: 96 NINTLLQPSPQCLINIPWKICSSQNHNNF 10
NIN LL+P PQCLINIPWKI SSQNH NF
Sbjct: 137 NINALLKPPPQCLINIPWKIRSSQNHYNF 51
Score = 264 bits (570), Expect(3) = 2e-081
Identities = 119/153 (77%), Positives = 125/153 (81%)
Frame = +3 / +2
Query: 9 KNCYGSGCYKFSMGY**GTEAKAGEAYLYSTSRF*K*KGTYQH*S*NSSDSRRC*HRRGC 188
KNC GSGCY+FSMGY**GTEA+A EA+LYSTSRF*K*KGTYQH*S*NSSDS C*HR GC
Sbjct: 50 KNCNGSGCYEFSMGY**GTEAEA*EAHLYSTSRF*K*KGTYQH*S*NSSDSCGC*HR*GC 229
Query: 189 SEDRRL*WR*SDKRLPRCLNEWHEAQDSRQDPRRDQEHVKGRDSQGPGGHVRLCXXXXXX 368
SEDRRL*WR*SDK LP C NE +EAQDSRQDPR DQEHVKGRDSQGP GHVRLC
Sbjct: 230 SEDRRL*WR*SDKCLP*CFNERYEAQDSRQDPR*DQEHVKGRDSQGPSGHVRLCGGPGEG 409
Query: 369 XXXCLAFRHREA*EVDG*VWVCLRPRPSAWVLF 467
CLA RHR+A*EVD *VWV L PR S + F
Sbjct: 410 PEECLACRHRKA*EVDD*VWVRLIPRSSP*IFF 508
Score = 255 bits (552), Expect(3) = 7e-079
Identities = 122/153 (79%), Positives = 124/153 (81%)
Frame = -2 / -1
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLIS 288
E+D PR QADPNS IHFSCFSMS GETLF TFTRASTKSHMATGSLAISSFDMFLIS
Sbjct: 508 EEDLRG*PRYQADPNSVIHFSCFSMSAGETLFWTFTRASTKSHMATGSLAISSFDMFLIS 329
Query: 287 SRVLPAILRLMPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXX 108
SRVLPAILRL+PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLL
Sbjct: 328 SRVLPAILRLIPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLSK 149
Query: 107 XXXXXXXXXXXXXXXXXXXSHGKFVAARTITIF 9
SHGKFVAARTITIF
Sbjct: 148 SGSGI*MRFSSLRLSASSISHGKFVAARTITIF 50
Score = 171 bits (369), Expect(3) = 1e-067
Identities = 79/94 (84%), Positives = 83/94 (88%)
Frame = +2 / +1
Query: 5 AKKLLWFWLLQIFHGILMRH*GEGWRSVFIFHFQILKVERHLSTLILEQFR*PQMLTSTR 184
++KL WFWLL+IFHGILMRH*G G RS FIFHFQILKVERHLSTLILEQFR* +MLTS R
Sbjct: 46 SQKL*WFWLLRIFHGILMRH*GGGLRSAFIFHFQILKVERHLSTLILEQFR*LRMLTSMR 225
Query: 185 LLGGQKAIVEMI*QTFAAMPQ*MA*GAR*QARPA 286
LLGGQKAIVEMI*Q FA M Q* *GAR*QARPA
Sbjct: 226 LLGGQKAIVEMI*QMFAVMLQ*TV*GAR*QARPA 327
Score = 123 bits (263), Expect(4) = 2e-054
Identities = 56/78 (71%), Positives = 58/78 (74%)
Frame = -3 / -2
Query: 244 RHRGKRXXXXXXXXXXXSEQPRRC*HLRLSELF*D*C**VPFYFQNLEVEYKYASPAFAS 65
+H GK SEQP RC*H +LSELF*D*C**VPFYFQNLEVEYK AS A AS
Sbjct: 285 KHHGKHLSDHLHYSLLSSEQPHRC*HPQLSELF*D*C**VPFYFQNLEVEYKCASQASAS 106
Query: 64 VPHQYPMENL*QPEP*QF 11
VPHQYPMEN *QPEP QF
Sbjct: 105 VPHQYPMENS*QPEPLQF 52
Score = 81.3 bits (171), Expect(4) = 2e-054
Identities = 35/61 (57%), Positives = 39/61 (63%)
Frame = -3 / -2
Query: 484 TQNECLNRTQADGRGLRQTQTQPSTSHASLCLKARHXXXXXXXXXXSRTWPPGPWLSRPL 305
T L + D RG+R+TQTQ STSHA LCL+ARH SRTWP GPWLSRPL
Sbjct: 525 TTQTMLKKI*GDDRGIRRTQTQSSTSHAFLCLQARHSSGPSPGPPQSRTWPLGPWLSRPL 346
Query: 304 T 302
T
Sbjct: 345 T 343
Score = 79.9 bits (168), Expect(3) = 1e-067
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2 / +1
Query: 332 WPCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
WPCATLWR W*R RRVSRLQT*+SMRSG LSLG P+TS I L +Q
Sbjct: 373 WPCATLWRPW*RSRRVSRLQT*KSMRSG*LSLGPPDTSVIPLDLLQ 510
Score = 51.0 bits (105), Expect(3) = e-107
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2 / +1
Query: 545 IDQRHELSCLFPVMLGIEFTIVSVL 619
IDQRHEL CLF VMLGI FTI+S+L
Sbjct: 580 IDQRHELYCLFSVMLGINFTIISIL 654
Score = 46.9 bits (96), Expect(3) = e-100
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -3
Query: 544 MKQDHRRVTPYHCYGMPCQP 485
M+QDH+R+T YHCY +PCQP
Sbjct: 581 MQQDHQRITAYHCYEIPCQP 522
Score = 46.0 bits (94), Expect(3) = 2e-081
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3 / +2
Query: 546 *TRGTSYLVCFQ*C*ELSSRSFQFLV 623
*TRGT+Y+V FQ*C*EL SR FQFL+
Sbjct: 581 *TRGTNYIVYFQ*C*ELISRLFQFLI 658
Score = 45.5 bits (93), Expect(3) = 1e-067
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1 / +3
Query: 544 YRPEARAILSVSSDARN*VHDRFSSWYM 627
+RPEAR ILS+ SDARN* HD F+S Y+
Sbjct: 579 HRPEARTILSIFSDARN*FHDYFNS*YV 662
Score = 44.6 bits (91), Expect(3) = e-100
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / -3
Query: 627 HIPRTETIVNSIPSITGNRQDSSCLWSI 544
+I R E IV IPSIT NRQ SSCLWS+
Sbjct: 662 YISRIEIIVKLIPSITENRQYSSCLWSM 579
Score = 41.8 bits (85), Expect(3) = 7e-079
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3 / -2
Query: 625 YTKN*NDRELNS*HHWKQTR*LVPLVY 545
+ KN*N+RE+NS*HH K T * VPLVY
Sbjct: 660 HIKN*NNREINS*HH*K*TI*FVPLVY 580
Score = 38.6 bits (78), Expect(4) = 2e-054
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2 / -1
Query: 623 YQELKRS*TQFLASLETDKIARASGL 546
YQELK S* FLASL+ D I RASGL
Sbjct: 658 YQELK*S*N*FLASLKIDNIVRASGL 581
Score = 37.3 bits (75), Expect(3) = 7e-079
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / -2
Query: 548 LYEARPPAGNTVSLLRNAVST 486
+Y RPPA N++SLLRN VST
Sbjct: 585 VYATRPPADNSISLLRNTVST 523
Score = 35.4 bits (71), Expect(3) = e-107
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = +3 / +1
Query: 486 G*HGIP*Q*YGVTRRWSCFI*TRGTSY 566
G*HGI *Q*Y V R WSC I R Y
Sbjct: 523 G*HGIS*Q*YAVIRWWSCCIDQRHELY 603
Score = 33.1 bits (66), Expect(3) = 2e-081
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1 / +2
Query: 487 VDTAFRSNDTVLPAGGLAS 543
VDT FRSND +L AGGL +
Sbjct: 524 VDTVFRSNDMLLSAGGLVA 580
Score = 27.6 bits (54), Expect(4) = 2e-054
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1 / -1
Query: 540 SKTTGG*HRIIATECRVN 487
+KTT G* IIAT+ RVN
Sbjct: 577 NKTTSG*QHIIATKYRVN 524
>gb|CD209409.1|CD209409 HS1_42_A06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_42_A06_A012 3', mRNA sequence
Length = 657
Score = 272 bits (588), Expect(3) = 2e-084
Identities = 116/128 (90%), Positives = 121/128 (94%)
Frame = +1 / +2
Query: 91 YIPLPDFESRKALININLRTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKI 270
++PLPDFESRKALININLRTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKI
Sbjct: 143 HLPLPDFESRKALININLRTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKI 322
Query: 271 AGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA*DLGH 450
AGKTRDEIKNMSKDEIAKDPVA CDFVEALVKVQK+VSP+DIEKHEKWM EFGSA* LGH
Sbjct: 323 AGKTRDEIKNMSKDEIAKDPVATCDFVEALVKVQKNVSPADIEKHEKWMTEFGSA*YLGH 502
Query: 451 LLGSCSNI 474
L S S +
Sbjct: 503 PLRSSSTL 526
Score = 245 bits (529), Expect(3) = 1e-077
Identities = 100/120 (83%), Positives = 105/120 (87%)
Frame = -1 / -3
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGL 277
K M EVSG PKLSHPLLML YV RR LL+LHQ LHKVA GH VLGYLVL*HVLDL+AGL
Sbjct: 508 KGMTEVSGGPKLSHPLLMLFYVCRRHILLDLHQGLHKVARGHWVLGYLVL*HVLDLIAGL 329
Query: 276 ACYLAPHAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKW 97
ACYLAPH +H* I AN+CQIISTIAFCPPSNL+DVNI YLNCSKINVDKCLSTFKIWKW
Sbjct: 328 ACYLAPHTVH*SITANICQIISTIAFCPPSNLIDVNIRSYLNCSKINVDKCLSTFKIWKW 149
Score = 227 bits (490), Expect(3) = 1e-068
Identities = 105/118 (88%), Positives = 109/118 (92%)
Frame = -2 / -1
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLIS 288
E+D PR QADPNS IHFSCFSMS G+T F TFTRASTKSH+ATGSLAISSFDMFLIS
Sbjct: 519 EEDLRG*PRYQADPNSVIHFSCFSMSAGDTFFWTFTRASTKSHVATGSLAISSFDMFLIS 340
Query: 287 SRVLPAILRLMPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLL 114
SRVLPAILRL+PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLL
Sbjct: 339 SRVLPAILRLIPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLL 166
Score = 206 bits (444), Expect(3) = 3e-062
Identities = 94/127 (74%), Positives = 99/127 (77%)
Frame = +3 / +1
Query: 87 YLYSTSRF*K*KGTYQH*S*NSSDSRRC*HRRGCSEDRRL*WR*SDKRLPRCLNEWHEAQ 266
Y +TSRF*K*KGTYQH*S*NSSDS C*HR GCSEDRRL*WR*SDK LP C NE +EAQ
Sbjct: 139 YTSTTSRF*K*KGTYQH*S*NSSDSCGC*HR*GCSEDRRL*WR*SDKCLP*CFNERYEAQ 318
Query: 267 DSRQDPRRDQEHVKGRDSQGPGGHVRLCXXXXXXXXXCLAFRHREA*EVDG*VWVCLRPR 446
DSRQDPR DQEHVKGRDSQGP GHVRLC C+A RHR+A*EVD *VWV L PR
Sbjct: 319 DSRQDPR*DQEHVKGRDSQGPSGHVRLCGGPGEGPEECVACRHRKA*EVDD*VWVRLIPR 498
Query: 447 PSAWVLF 467
S + F
Sbjct: 499 SSP*IFF 519
Score = 119 bits (254), Expect(3) = 5e-047
Identities = 57/68 (83%), Positives = 60/68 (88%)
Frame = +2 / +3
Query: 83 SVFIFHFQILKVERHLSTLILEQFR*PQMLTSTRLLGGQKAIVEMI*QTFAAMPQ*MA*G 262
S+ I+HFQILKVERHLSTLILEQFR* +MLTS RLLGGQKAIVEMI*Q FA M Q* *G
Sbjct: 135 SIHIYHFQILKVERHLSTLILEQFR*LRMLTSMRLLGGQKAIVEMI*QMFAVMLQ*TV*G 314
Query: 263 AR*QARPA 286
AR*QARPA
Sbjct: 315 AR*QARPA 338
Score = 78.5 bits (165), Expect(4) = 3e-035
Identities = 34/61 (55%), Positives = 38/61 (62%)
Frame = -3 / -2
Query: 484 TQNECLNRTQADGRGLRQTQTQPSTSHASLCLKARHXXXXXXXXXXSRTWPPGPWLSRPL 305
T L + D RG+R+TQTQ STSHA LCL+A H SRTWP GPWLSRPL
Sbjct: 536 TTQTMLKKI*GDDRGIRRTQTQSSTSHAFLCLQATHSSGPSPGPPQSRTWPLGPWLSRPL 357
Query: 304 T 302
T
Sbjct: 356 T 354
Score = 70.7 bits (148), Expect(3) = 5e-047
Identities = 32/46 (69%), Positives = 36/46 (78%)
Frame = +2 / +3
Query: 332 WPCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
WP ATLWR W*R RR+ RLQT*+SMRSG LSLG P+TS I L +Q
Sbjct: 384 WPRATLWRPW*RSRRMCRLQT*KSMRSG*LSLGPPDTSVIPLDLLQ 521
Score = 70.7 bits (148), Expect(4) = 3e-035
Identities = 33/58 (56%), Positives = 36/58 (62%)
Frame = -3 / -2
Query: 244 RHRGKRXXXXXXXXXXXSEQPRRC*HLRLSELF*D*C**VPFYFQNLEVEYKYASPAF 71
+H GK SEQP RC*H +LSELF*D*C**VPFYFQNLEV Y +
Sbjct: 296 KHHGKHLSDHLHYSLLSSEQPHRC*HPQLSELF*D*C**VPFYFQNLEVVDVYGEEKY 123
Score = 46.9 bits (96), Expect(3) = 1e-077
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -3
Query: 544 MKQDHRRVTPYHCYGMPCQP 485
M+QDH+R+T YHCY +PCQP
Sbjct: 592 MQQDHQRITAYHCYEIPCQP 533
Score = 46.0 bits (94), Expect(3) = 2e-084
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +2 / +3
Query: 545 IDQRHELSCLFPVMLGIEFTIV 610
IDQRHEL CLF VMLGI FTI+
Sbjct: 591 IDQRHELYCLFSVMLGINFTII 656
Score = 39.6 bits (80), Expect(3) = 3e-062
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1 / +2
Query: 544 YRPEARAILSVSSDARN*VHD 606
+RPEAR ILS+ SDARN* HD
Sbjct: 590 HRPEARTILSIFSDARN*FHD 652
Score = 38.6 bits (78), Expect(3) = 1e-077
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1 / -3
Query: 606 IVNSIPSITGNRQDSSCLWSI 544
IV IPSIT NRQ SSCLWS+
Sbjct: 652 IVKLIPSITENRQYSSCLWSM 590
Score = 37.7 bits (76), Expect(3) = 5e-047
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +3 / +1
Query: 546 *TRGTSYLVCFQ*C*ELSSRSF 611
*TRGT+Y+V FQ*C*EL SR F
Sbjct: 592 *TRGTNYIVYFQ*C*ELISRLF 657
Score = 37.3 bits (75), Expect(3) = 1e-068
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / -2
Query: 548 LYEARPPAGNTVSLLRNAVST 486
+Y RPPA N++SLLRN VST
Sbjct: 596 VYATRPPADNSISLLRNTVST 534
Score = 35.9 bits (72), Expect(3) = 1e-068
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = -3 / -2
Query: 610 NDRELNS*HHWKQTR*LVPLVY 545
N+RE+NS*HH K T * VPLVY
Sbjct: 656 NNREINS*HH*K*TI*FVPLVY 591
Score = 35.4 bits (71), Expect(3) = 2e-084
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = +3 / +3
Query: 486 G*HGIP*Q*YGVTRRWSCFI*TRGTSY 566
G*HGI *Q*Y V R WSC I R Y
Sbjct: 534 G*HGIS*Q*YAVIRWWSCCIDQRHELY 614
Score = 33.1 bits (66), Expect(3) = 3e-062
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1 / +1
Query: 487 VDTAFRSNDTVLPAGGLAS 543
VDT FRSND +L AGGL +
Sbjct: 535 VDTVFRSNDMLLSAGGLVA 591
Score = 28.6 bits (56), Expect(4) = 3e-035
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / -1
Query: 605 S*TQFLASLETDKIARASGL 546
S* FLASL+ D I RASGL
Sbjct: 651 S*N*FLASLKIDNIVRASGL 592
Score = 27.6 bits (54), Expect(4) = 3e-035
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1 / -1
Query: 540 SKTTGG*HRIIATECRVN 487
+KTT G* IIAT+ RVN
Sbjct: 588 NKTTSG*QHIIATKYRVN 535
>gb|BZ412852.1|BZ412852 117d8_ctg2 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 117d8, DNA
sequence
Length = 849
Score = 231 bits (498), Expect(4) = 3e-075
Identities = 99/107 (92%), Positives = 101/107 (94%)
Frame = +1 / -3
Query: 154 QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV 333
QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV
Sbjct: 625 QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV 446
Query: 334 AMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA*DLGHLLGSCSNI 474
AMCDFVEALVKVQKSVSP+DIEKHEKWM EFGSA* LGH L S S +
Sbjct: 445 AMCDFVEALVKVQKSVSPADIEKHEKWMTEFGSA*YLGHPLRSSSTL 305
Score = 205 bits (443), Expect(3) = 1e-067
Identities = 94/104 (90%), Positives = 96/104 (92%)
Frame = -2 / +3
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLIS 288
E+D PR QADPNS IHFSCFSMS GETLF TFTRASTKSHMATGSLAISSFDMFLIS
Sbjct: 312 EEDLRG*PRYQADPNSVIHFSCFSMSAGETLFWTFTRASTKSHMATGSLAISSFDMFLIS 491
Query: 287 SRVLPAILRLMPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI 156
SRVLPAILRL+PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI
Sbjct: 492 SRVLPAILRLIPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI 623
Score = 203 bits (438), Expect(3) = 3e-063
Identities = 84/102 (82%), Positives = 90/102 (88%)
Frame = -1 / +2
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGL 277
K M EVSG PKLSHPLLML YV RRDTLL+LHQ LHKVAHGH VLGYLVL*HVLDL+AGL
Sbjct: 323 KGMTEVSGGPKLSHPLLMLFYVCRRDTLLDLHQGLHKVAHGHWVLGYLVL*HVLDLIAGL 502
Query: 276 ACYLAPHAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLN 151
ACYLAPH +H* I AN+CQIISTIAFCPPSNL+DVNI YL+
Sbjct: 503 ACYLAPHTVH*SITANICQIISTIAFCPPSNLIDVNIRSYLS 628
Score = 169 bits (364), Expect(3) = 3e-053
Identities = 76/106 (71%), Positives = 80/106 (75%)
Frame = +3 / -2
Query: 150 SSDSRRC*HRRGCSEDRRL*WR*SDKRLPRCLNEWHEAQDSRQDPRRDQEHVKGRDSQGP 329
S+DS C*HR GCSEDRRL*WR*SDK LP C NE +EAQDSRQDPR DQEHVKGRDSQGP
Sbjct: 629 STDSCGC*HR*GCSEDRRL*WR*SDKCLP*CFNERYEAQDSRQDPR*DQEHVKGRDSQGP 450
Query: 330 GGHVRLCXXXXXXXXXCLAFRHREA*EVDG*VWVCLRPRPSAWVLF 467
GHVRLC CLA RHR+A*EVD *VWV L PR S + F
Sbjct: 449 SGHVRLCGGPGEGPEECLACRHRKA*EVDD*VWVRLIPRSSP*IFF 312
Score = 81.3 bits (171), Expect(4) = 4e-027
Identities = 35/61 (57%), Positives = 39/61 (63%)
Frame = -3 / +1
Query: 484 TQNECLNRTQADGRGLRQTQTQPSTSHASLCLKARHXXXXXXXXXXSRTWPPGPWLSRPL 305
T L + D RG+R+TQTQ STSHA LCL+ARH SRTWP GPWLSRPL
Sbjct: 295 TTQTMLKKI*GDDRGIRRTQTQSSTSHAFLCLQARHSSGPSPGPPQSRTWPLGPWLSRPL 474
Query: 304 T 302
T
Sbjct: 475 T 477
Score = 79.9 bits (168), Expect(3) = 2e-037
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2 / -1
Query: 332 WPCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
WPCATLWR W*R RRVSRLQT*+SMRSG LSLG P+TS I L +Q
Sbjct: 447 WPCATLWRPW*RSRRVSRLQT*KSMRSG*LSLGPPDTSVIPLDLLQ 310
Score = 69.8 bits (146), Expect(3) = 2e-037
Identities = 36/44 (81%), Positives = 37/44 (84%)
Frame = +2 / -1
Query: 155 R*PQMLTSTRLLGGQKAIVEMI*QTFAAMPQ*MA*GAR*QARPA 286
R* +MLTS RLLGGQKAIVEMI*Q FA M Q* *GAR*QARPA
Sbjct: 624 R*LRMLTSMRLLGGQKAIVEMI*QMFAVMLQ*TV*GAR*QARPA 493
Score = 51.0 bits (105), Expect(4) = 3e-075
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2 / -1
Query: 545 IDQRHELSCLFPVMLGIEFTIVSVL 619
IDQRHEL CLF VMLGI FTI+S+L
Sbjct: 240 IDQRHELYCLFSVMLGINFTIISIL 166
Score = 46.9 bits (96), Expect(3) = 1e-067
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +2
Query: 544 MKQDHRRVTPYHCYGMPCQP 485
M+QDH+R+T YHCY +PCQP
Sbjct: 239 MQQDHQRITAYHCYEIPCQP 298
Score = 46.0 bits (94), Expect(3) = 3e-053
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3 / -2
Query: 546 *TRGTSYLVCFQ*C*ELSSRSFQFLV 623
*TRGT+Y+V FQ*C*EL SR FQFL+
Sbjct: 239 *TRGTNYIVYFQ*C*ELISRLFQFLI 162
Score = 45.5 bits (93), Expect(3) = 2e-037
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1 / -3
Query: 544 YRPEARAILSVSSDARN*VHDRFSSWYM 627
+RPEAR ILS+ SDARN* HD F+S Y+
Sbjct: 241 HRPEARTILSIFSDARN*FHDYFNS*YV 158
Score = 44.6 bits (91), Expect(3) = 1e-067
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / +2
Query: 627 HIPRTETIVNSIPSITGNRQDSSCLWSI 544
+I R E IV IPSIT NRQ SSCLWS+
Sbjct: 158 YISRIEIIVKLIPSITENRQYSSCLWSM 241
Score = 41.8 bits (85), Expect(3) = 3e-063
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3 / +1
Query: 625 YTKN*NDRELNS*HHWKQTR*LVPLVY 545
+ KN*N+RE+NS*HH K T * VPLVY
Sbjct: 160 HIKN*NNREINS*HH*K*TI*FVPLVY 240
Score = 38.6 bits (78), Expect(4) = 4e-027
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2 / +3
Query: 623 YQELKRS*TQFLASLETDKIARASGL 546
YQELK S* FLASL+ D I RASGL
Sbjct: 162 YQELK*S*N*FLASLKIDNIVRASGL 239
Score = 37.3 bits (75), Expect(3) = 3e-063
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / +1
Query: 548 LYEARPPAGNTVSLLRNAVST 486
+Y RPPA N++SLLRN VST
Sbjct: 235 VYATRPPADNSISLLRNTVST 297
Score = 35.4 bits (71), Expect(4) = 3e-075
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = +3 / -1
Query: 486 G*HGIP*Q*YGVTRRWSCFI*TRGTSY 566
G*HGI *Q*Y V R WSC I R Y
Sbjct: 297 G*HGIS*Q*YAVIRWWSCCIDQRHELY 217
Score = 33.1 bits (66), Expect(3) = 3e-053
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1 / -2
Query: 487 VDTAFRSNDTVLPAGGLAS 543
VDT FRSND +L AGGL +
Sbjct: 296 VDTVFRSNDMLLSAGGLVA 240
Score = 29.9 bits (59), Expect(4) = 4e-027
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3 / +1
Query: 244 RHRGKRXXXXXXXXXXXSEQPRRC*HLRLS 155
+H GK SEQP RC*H +LS
Sbjct: 535 KHHGKHLSDHLHYSLLSSEQPHRC*HPQLS 624
Score = 27.6 bits (54), Expect(4) = 4e-027
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1 / +3
Query: 540 SKTTGG*HRIIATECRVN 487
+KTT G* IIAT+ RVN
Sbjct: 243 NKTTSG*QHIIATKYRVN 296
Score = 23.5 bits (45), Expect(4) = 3e-075
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / -2
Query: 689 PCLVEGISQEP 721
P +EGISQEP
Sbjct: 89 PVFIEGISQEP 57
>gb|CL180433.1|CL180433 104_390_10896013_116_31930_157 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896013, DNA
sequence
Length = 760
Score = 231 bits (498), Expect(4) = 3e-075
Identities = 99/107 (92%), Positives = 101/107 (94%)
Frame = +1 / -2
Query: 154 QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV 333
QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV
Sbjct: 717 QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV 538
Query: 334 AMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA*DLGHLLGSCSNI 474
AMCDFVEALVKVQKSVSP+DIEKHEKWM EFGSA* LGH L S S +
Sbjct: 537 AMCDFVEALVKVQKSVSPADIEKHEKWMTEFGSA*YLGHPLRSSSTL 397
Score = 205 bits (443), Expect(3) = 1e-067
Identities = 94/104 (90%), Positives = 96/104 (92%)
Frame = -2 / +2
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLIS 288
E+D PR QADPNS IHFSCFSMS GETLF TFTRASTKSHMATGSLAISSFDMFLIS
Sbjct: 404 EEDLRG*PRYQADPNSVIHFSCFSMSAGETLFWTFTRASTKSHMATGSLAISSFDMFLIS 583
Query: 287 SRVLPAILRLMPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI 156
SRVLPAILRL+PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI
Sbjct: 584 SRVLPAILRLIPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI 715
Score = 203 bits (438), Expect(3) = 3e-063
Identities = 84/102 (82%), Positives = 90/102 (88%)
Frame = -1 / +1
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGL 277
K M EVSG PKLSHPLLML YV RRDTLL+LHQ LHKVAHGH VLGYLVL*HVLDL+AGL
Sbjct: 415 KGMTEVSGGPKLSHPLLMLFYVCRRDTLLDLHQGLHKVAHGHWVLGYLVL*HVLDLIAGL 594
Query: 276 ACYLAPHAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLN 151
ACYLAPH +H* I AN+CQIISTIAFCPPSNL+DVNI YL+
Sbjct: 595 ACYLAPHTVH*SITANICQIISTIAFCPPSNLIDVNIRSYLS 720
Score = 169 bits (364), Expect(3) = 3e-053
Identities = 76/106 (71%), Positives = 80/106 (75%)
Frame = +3 / -1
Query: 150 SSDSRRC*HRRGCSEDRRL*WR*SDKRLPRCLNEWHEAQDSRQDPRRDQEHVKGRDSQGP 329
S+DS C*HR GCSEDRRL*WR*SDK LP C NE +EAQDSRQDPR DQEHVKGRDSQGP
Sbjct: 721 STDSCGC*HR*GCSEDRRL*WR*SDKCLP*CFNERYEAQDSRQDPR*DQEHVKGRDSQGP 542
Query: 330 GGHVRLCXXXXXXXXXCLAFRHREA*EVDG*VWVCLRPRPSAWVLF 467
GHVRLC CLA RHR+A*EVD *VWV L PR S + F
Sbjct: 541 SGHVRLCGGPGEGPEECLACRHRKA*EVDD*VWVRLIPRSSP*IFF 404
Score = 81.3 bits (171), Expect(4) = 4e-027
Identities = 35/61 (57%), Positives = 39/61 (63%)
Frame = -3 / +3
Query: 484 TQNECLNRTQADGRGLRQTQTQPSTSHASLCLKARHXXXXXXXXXXSRTWPPGPWLSRPL 305
T L + D RG+R+TQTQ STSHA LCL+ARH SRTWP GPWLSRPL
Sbjct: 387 TTQTMLKKI*GDDRGIRRTQTQSSTSHAFLCLQARHSSGPSPGPPQSRTWPLGPWLSRPL 566
Query: 304 T 302
T
Sbjct: 567 T 569
Score = 79.9 bits (168), Expect(3) = 2e-037
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2 / -3
Query: 332 WPCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
WPCATLWR W*R RRVSRLQT*+SMRSG LSLG P+TS I L +Q
Sbjct: 539 WPCATLWRPW*RSRRVSRLQT*KSMRSG*LSLGPPDTSVIPLDLLQ 402
Score = 69.8 bits (146), Expect(3) = 2e-037
Identities = 36/44 (81%), Positives = 37/44 (84%)
Frame = +2 / -3
Query: 155 R*PQMLTSTRLLGGQKAIVEMI*QTFAAMPQ*MA*GAR*QARPA 286
R* +MLTS RLLGGQKAIVEMI*Q FA M Q* *GAR*QARPA
Sbjct: 716 R*LRMLTSMRLLGGQKAIVEMI*QMFAVMLQ*TV*GAR*QARPA 585
Score = 51.0 bits (105), Expect(4) = 3e-075
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2 / -3
Query: 545 IDQRHELSCLFPVMLGIEFTIVSVL 619
IDQRHEL CLF VMLGI FTI+S+L
Sbjct: 332 IDQRHELYCLFSVMLGINFTIISIL 258
Score = 46.9 bits (96), Expect(3) = 1e-067
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / +1
Query: 544 MKQDHRRVTPYHCYGMPCQP 485
M+QDH+R+T YHCY +PCQP
Sbjct: 331 MQQDHQRITAYHCYEIPCQP 390
Score = 46.0 bits (94), Expect(3) = 3e-053
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3 / -1
Query: 546 *TRGTSYLVCFQ*C*ELSSRSFQFLV 623
*TRGT+Y+V FQ*C*EL SR FQFL+
Sbjct: 331 *TRGTNYIVYFQ*C*ELISRLFQFLI 254
Score = 45.5 bits (93), Expect(3) = 2e-037
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1 / -2
Query: 544 YRPEARAILSVSSDARN*VHDRFSSWYM 627
+RPEAR ILS+ SDARN* HD F+S Y+
Sbjct: 333 HRPEARTILSIFSDARN*FHDYFNS*YV 250
Score = 44.6 bits (91), Expect(3) = 1e-067
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / +1
Query: 627 HIPRTETIVNSIPSITGNRQDSSCLWSI 544
+I R E IV IPSIT NRQ SSCLWS+
Sbjct: 250 YISRIEIIVKLIPSITENRQYSSCLWSM 333
Score = 41.8 bits (85), Expect(3) = 3e-063
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3 / +3
Query: 625 YTKN*NDRELNS*HHWKQTR*LVPLVY 545
+ KN*N+RE+NS*HH K T * VPLVY
Sbjct: 252 HIKN*NNREINS*HH*K*TI*FVPLVY 332
Score = 38.6 bits (78), Expect(4) = 4e-027
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2 / +2
Query: 623 YQELKRS*TQFLASLETDKIARASGL 546
YQELK S* FLASL+ D I RASGL
Sbjct: 254 YQELK*S*N*FLASLKIDNIVRASGL 331
Score = 37.3 bits (75), Expect(3) = 3e-063
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / +3
Query: 548 LYEARPPAGNTVSLLRNAVST 486
+Y RPPA N++SLLRN VST
Sbjct: 327 VYATRPPADNSISLLRNTVST 389
Score = 35.4 bits (71), Expect(4) = 3e-075
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = +3 / -3
Query: 486 G*HGIP*Q*YGVTRRWSCFI*TRGTSY 566
G*HGI *Q*Y V R WSC I R Y
Sbjct: 389 G*HGIS*Q*YAVIRWWSCCIDQRHELY 309
Score = 33.1 bits (66), Expect(3) = 3e-053
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1 / -1
Query: 487 VDTAFRSNDTVLPAGGLAS 543
VDT FRSND +L AGGL +
Sbjct: 388 VDTVFRSNDMLLSAGGLVA 332
Score = 29.9 bits (59), Expect(4) = 4e-027
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3 / +3
Query: 244 RHRGKRXXXXXXXXXXXSEQPRRC*HLRLS 155
+H GK SEQP RC*H +LS
Sbjct: 627 KHHGKHLSDHLHYSLLSSEQPHRC*HPQLS 716
Score = 27.6 bits (54), Expect(4) = 4e-027
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1 / +2
Query: 540 SKTTGG*HRIIATECRVN 487
+KTT G* IIAT+ RVN
Sbjct: 335 NKTTSG*QHIIATKYRVN 388
Score = 23.5 bits (45), Expect(4) = 3e-075
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / -1
Query: 689 PCLVEGISQEP 721
P +EGISQEP
Sbjct: 181 PVFIEGISQEP 149
>gb|CL180434.1|CL180434 104_390_10896013_148_31929_157 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896013, DNA
sequence
Length = 672
Score = 231 bits (498), Expect(3) = 1e-073
Identities = 99/107 (92%), Positives = 101/107 (94%)
Frame = +1 / +3
Query: 154 QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV 333
QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV
Sbjct: 123 QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV 302
Query: 334 AMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA*DLGHLLGSCSNI 474
AMCDFVEALVKVQKSVSP+DIEKHEKWM EFGSA* LGH L S S +
Sbjct: 303 AMCDFVEALVKVQKSVSPADIEKHEKWMTEFGSA*YLGHPLRSSSTL 443
Score = 205 bits (443), Expect(3) = 1e-067
Identities = 94/104 (90%), Positives = 96/104 (92%)
Frame = -2 / -3
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLIS 288
E+D PR QADPNS IHFSCFSMS GETLF TFTRASTKSHMATGSLAISSFDMFLIS
Sbjct: 436 EEDLRG*PRYQADPNSVIHFSCFSMSAGETLFWTFTRASTKSHMATGSLAISSFDMFLIS 257
Query: 287 SRVLPAILRLMPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI 156
SRVLPAILRL+PFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI
Sbjct: 256 SRVLPAILRLIPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI 125
Score = 203 bits (438), Expect(3) = 3e-063
Identities = 84/102 (82%), Positives = 90/102 (88%)
Frame = -1 / -2
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGL 277
K M EVSG PKLSHPLLML YV RRDTLL+LHQ LHKVAHGH VLGYLVL*HVLDL+AGL
Sbjct: 425 KGMTEVSGGPKLSHPLLMLFYVCRRDTLLDLHQGLHKVAHGHWVLGYLVL*HVLDLIAGL 246
Query: 276 ACYLAPHAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLN 151
ACYLAPH +H* I AN+CQIISTIAFCPPSNL+DVNI YL+
Sbjct: 245 ACYLAPHTVH*SITANICQIISTIAFCPPSNLIDVNIRSYLS 120
Score = 169 bits (364), Expect(3) = 3e-053
Identities = 76/106 (71%), Positives = 80/106 (75%)
Frame = +3 / +2
Query: 150 SSDSRRC*HRRGCSEDRRL*WR*SDKRLPRCLNEWHEAQDSRQDPRRDQEHVKGRDSQGP 329
S+DS C*HR GCSEDRRL*WR*SDK LP C NE +EAQDSRQDPR DQEHVKGRDSQGP
Sbjct: 119 STDSCGC*HR*GCSEDRRL*WR*SDKCLP*CFNERYEAQDSRQDPR*DQEHVKGRDSQGP 298
Query: 330 GGHVRLCXXXXXXXXXCLAFRHREA*EVDG*VWVCLRPRPSAWVLF 467
GHVRLC CLA RHR+A*EVD *VWV L PR S + F
Sbjct: 299 SGHVRLCGGPGEGPEECLACRHRKA*EVDD*VWVRLIPRSSP*IFF 436
Score = 81.3 bits (171), Expect(4) = 4e-027
Identities = 35/61 (57%), Positives = 39/61 (63%)
Frame = -3 / -1
Query: 484 TQNECLNRTQADGRGLRQTQTQPSTSHASLCLKARHXXXXXXXXXXSRTWPPGPWLSRPL 305
T L + D RG+R+TQTQ STSHA LCL+ARH SRTWP GPWLSRPL
Sbjct: 453 TTQTMLKKI*GDDRGIRRTQTQSSTSHAFLCLQARHSSGPSPGPPQSRTWPLGPWLSRPL 274
Query: 304 T 302
T
Sbjct: 273 T 271
Score = 79.9 bits (168), Expect(3) = 2e-037
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2 / +1
Query: 332 WPCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
WPCATLWR W*R RRVSRLQT*+SMRSG LSLG P+TS I L +Q
Sbjct: 301 WPCATLWRPW*RSRRVSRLQT*KSMRSG*LSLGPPDTSVIPLDLLQ 438
Score = 69.8 bits (146), Expect(3) = 2e-037
Identities = 36/44 (81%), Positives = 37/44 (84%)
Frame = +2 / +1
Query: 155 R*PQMLTSTRLLGGQKAIVEMI*QTFAAMPQ*MA*GAR*QARPA 286
R* +MLTS RLLGGQKAIVEMI*Q FA M Q* *GAR*QARPA
Sbjct: 124 R*LRMLTSMRLLGGQKAIVEMI*QMFAVMLQ*TV*GAR*QARPA 255
Score = 51.0 bits (105), Expect(3) = 1e-073
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2 / +1
Query: 545 IDQRHELSCLFPVMLGIEFTIVSVL 619
IDQRHEL CLF VMLGI FTI+S+L
Sbjct: 508 IDQRHELYCLFSVMLGINFTIISIL 582
Score = 46.9 bits (96), Expect(3) = 1e-067
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -2
Query: 544 MKQDHRRVTPYHCYGMPCQP 485
M+QDH+R+T YHCY +PCQP
Sbjct: 509 MQQDHQRITAYHCYEIPCQP 450
Score = 46.0 bits (94), Expect(3) = 3e-053
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3 / +2
Query: 546 *TRGTSYLVCFQ*C*ELSSRSFQFLV 623
*TRGT+Y+V FQ*C*EL SR FQFL+
Sbjct: 509 *TRGTNYIVYFQ*C*ELISRLFQFLI 586
Score = 45.5 bits (93), Expect(3) = 2e-037
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1 / +3
Query: 544 YRPEARAILSVSSDARN*VHDRFSSWYM 627
+RPEAR ILS+ SDARN* HD F+S Y+
Sbjct: 507 HRPEARTILSIFSDARN*FHDYFNS*YV 590
Score = 44.6 bits (91), Expect(3) = 1e-067
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / -2
Query: 627 HIPRTETIVNSIPSITGNRQDSSCLWSI 544
+I R E IV IPSIT NRQ SSCLWS+
Sbjct: 590 YISRIEIIVKLIPSITENRQYSSCLWSM 507
Score = 41.8 bits (85), Expect(3) = 3e-063
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3 / -1
Query: 625 YTKN*NDRELNS*HHWKQTR*LVPLVY 545
+ KN*N+RE+NS*HH K T * VPLVY
Sbjct: 588 HIKN*NNREINS*HH*K*TI*FVPLVY 508
Score = 38.6 bits (78), Expect(4) = 4e-027
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2 / -3
Query: 623 YQELKRS*TQFLASLETDKIARASGL 546
YQELK S* FLASL+ D I RASGL
Sbjct: 586 YQELK*S*N*FLASLKIDNIVRASGL 509
Score = 37.3 bits (75), Expect(3) = 3e-063
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / -1
Query: 548 LYEARPPAGNTVSLLRNAVST 486
+Y RPPA N++SLLRN VST
Sbjct: 513 VYATRPPADNSISLLRNTVST 451
Score = 35.4 bits (71), Expect(3) = 1e-073
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = +3 / +1
Query: 486 G*HGIP*Q*YGVTRRWSCFI*TRGTSY 566
G*HGI *Q*Y V R WSC I R Y
Sbjct: 451 G*HGIS*Q*YAVIRWWSCCIDQRHELY 531
Score = 33.1 bits (66), Expect(3) = 3e-053
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1 / +2
Query: 487 VDTAFRSNDTVLPAGGLAS 543
VDT FRSND +L AGGL +
Sbjct: 452 VDTVFRSNDMLLSAGGLVA 508
Score = 29.9 bits (59), Expect(4) = 4e-027
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3 / -1
Query: 244 RHRGKRXXXXXXXXXXXSEQPRRC*HLRLS 155
+H GK SEQP RC*H +LS
Sbjct: 213 KHHGKHLSDHLHYSLLSSEQPHRC*HPQLS 124
Score = 27.6 bits (54), Expect(4) = 4e-027
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1 / -3
Query: 540 SKTTGG*HRIIATECRVN 487
+KTT G* IIAT+ RVN
Sbjct: 505 NKTTSG*QHIIATKYRVN 452
>gb|BF421751.1|BF421751 FM1_16_B09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 408
Score = 233 bits (503), Expect(2) = 7e-065
Identities = 100/109 (91%), Positives = 103/109 (94%)
Frame = +1 / +1
Query: 148 TVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKD 327
TVQIAADVNIDEVARRTEGYSGD LTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKD
Sbjct: 1 TVQIAADVNIDEVARRTEGYSGDVLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKD 180
Query: 328 PVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA*DLGHLLGSCSNI 474
PVAMCDFVEALVKVQKSVSP+DIE+HEKWM EFGSA*DLGH L S S +
Sbjct: 181 PVAMCDFVEALVKVQKSVSPADIEQHEKWMTEFGSA*DLGHPLRSSSTL 327
Score = 206 bits (445), Expect(2) = 3e-060
Identities = 85/103 (82%), Positives = 90/103 (87%)
Frame = -1 / -1
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGL 277
K M EVSG PKLSHPLLML YV RRDTLL+LHQ LHKVAHGH VLGYLVL*HVLDL+AGL
Sbjct: 309 KGMTEVSGGPKLSHPLLMLFYVCRRDTLLDLHQGLHKVAHGHWVLGYLVL*HVLDLIAGL 130
Query: 276 ACYLAPHAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNC 148
ACYLAPH +H* I AN+CQ ISTIAFCPPSNL+DVNI YLNC
Sbjct: 129 ACYLAPHTVH*SITANICQNISTIAFCPPSNLIDVNIRSYLNC 1
Score = 206 bits (444), Expect(2) = 3e-057
Identities = 95/106 (89%), Positives = 98/106 (92%)
Frame = -2 / -2
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLIS 288
E+D PRSQADPNS IHFSC SMS GETLF TFTRASTKSHMATGSLAISSFDMFLIS
Sbjct: 320 EEDLRG*PRSQADPNSVIHFSCCSMSAGETLFWTFTRASTKSHMATGSLAISSFDMFLIS 141
Query: 287 SRVLPAILRLMPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*T 150
SRVLPAILRL+PFIEASRQTFVR+SPL*PSVLRATSSMLTSAAI*T
Sbjct: 140 SRVLPAILRLIPFIEASRQTFVRTSPL*PSVLRATSSMLTSAAI*T 3
Score = 171 bits (368), Expect(2) = 5e-046
Identities = 77/106 (72%), Positives = 79/106 (74%)
Frame = +3 / +3
Query: 150 SSDSRRC*HRRGCSEDRRL*WR*SDKRLPRCLNEWHEAQDSRQDPRRDQEHVKGRDSQGP 329
SSDS C*HR GCSEDRRL*WR SDK LP C NE +EAQDSRQDPR DQEHVKGRDSQGP
Sbjct: 3 SSDSCGC*HR*GCSEDRRL*WRCSDKCLP*CFNERYEAQDSRQDPR*DQEHVKGRDSQGP 182
Query: 330 GGHVRLCXXXXXXXXXCLAFRHREA*EVDG*VWVCLRPRPSAWVLF 467
GHVRLC CLA RHR A*EVD *VWV LRPR S + F
Sbjct: 183 SGHVRLCGGPGEGPEECLACRHRTA*EVDD*VWVRLRPRSSP*IFF 320
Score = 82.2 bits (173), Expect(3) = 3e-022
Identities = 36/61 (59%), Positives = 39/61 (63%)
Frame = -3 / -3
Query: 484 TQNECLNRTQADGRGLRQTQTQPSTSHASLCLKARHXXXXXXXXXXSRTWPPGPWLSRPL 305
T L + D RGLR+TQTQ STSHA LCL+ARH SRTWP GPWLSRPL
Sbjct: 337 TTQTMLKKI*GDDRGLRRTQTQSSTSHAVLCLQARHSSGPSPGPPQSRTWPLGPWLSRPL 158
Query: 304 T 302
T
Sbjct: 157 T 155
Score = 80.3 bits (169), Expect(3) = 9e-035
Identities = 36/46 (78%), Positives = 37/46 (80%)
Frame = +2 / +2
Query: 332 WPCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
WPCATLWR W*R RRVSRLQT* SMRSG LSLG PETS I L +Q
Sbjct: 185 WPCATLWRPW*RSRRVSRLQT*NSMRSG*LSLGPPETSVIPLDLLQ 322
Score = 73.0 bits (153), Expect(3) = 9e-035
Identities = 37/46 (80%), Positives = 38/46 (82%)
Frame = +2 / +2
Query: 149 QFR*PQMLTSTRLLGGQKAIVEMI*QTFAAMPQ*MA*GAR*QARPA 286
QFR* +MLTS RLLGGQKAIVEM *Q FA M Q* *GAR*QARPA
Sbjct: 2 QFR*LRMLTSMRLLGGQKAIVEMF*QMFAVMLQ*TV*GAR*QARPA 139
Score = 46.9 bits (96), Expect(2) = 3e-060
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -1
Query: 544 MKQDHRRVTPYHCYGMPCQP 485
M+QDH+R+T YHCY +PCQP
Sbjct: 393 MQQDHQRITAYHCYEIPCQP 334
Score = 37.3 bits (75), Expect(2) = 3e-057
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / -3
Query: 548 LYEARPPAGNTVSLLRNAVST 486
+Y RPPA N++SLLRN VST
Sbjct: 397 VYATRPPADNSISLLRNTVST 335
Score = 35.9 bits (72), Expect(2) = 7e-065
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +2 / +1
Query: 488 LTRHSVAMIRCYPPVVLLH 544
LTR+ VAMI CYP VVLLH
Sbjct: 337 LTRYFVAMICCYPLVVLLH 393
Score = 34.5 bits (69), Expect(2) = 5e-046
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = +3 / +2
Query: 486 G*HGIP*Q*YGVTRRWSCFI 545
G*HGI *Q*Y V R WSC I
Sbjct: 335 G*HGIS*Q*YAVIRWWSCCI 394
Score = 34.1 bits (68), Expect(3) = 3e-022
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3 / -3
Query: 244 RHRGKRXXXXXXXXXXXSEQPRRC*HLRLSEL 149
+H GK SEQP RC*H +LSEL
Sbjct: 97 KHHGKHLSEHLHYSLLSSEQPHRC*HPQLSEL 2
Score = 33.1 bits (66), Expect(3) = 9e-035
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1 / +3
Query: 487 VDTAFRSNDTVLPAGGLAS 543
VDT FRSND +L AGGL +
Sbjct: 336 VDTVFRSNDMLLSAGGLVA 392
Score = 27.6 bits (54), Expect(3) = 3e-022
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1 / -2
Query: 540 SKTTGG*HRIIATECRVN 487
+KTT G* IIAT+ RVN
Sbjct: 389 NKTTSG*QHIIATKYRVN 336
>gb|CW236997.1|CW236997 104_693_11215924_116_37513_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215924, DNA
sequence
Length = 759
Score = 209 bits (451), Expect(3) = 4e-062
Identities = 90/107 (84%), Positives = 96/107 (89%)
Frame = +1 / -1
Query: 154 QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV 333
QIA DVNIDEVARRTEGYSGDDLTNVCRDASMNGMR KIAGKTR+EIKNMSK+ IAKDPV
Sbjct: 663 QIAVDVNIDEVARRTEGYSGDDLTNVCRDASMNGMRCKIAGKTREEIKNMSKNGIAKDPV 484
Query: 334 AMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA*DLGHLLGSCSNI 474
MCDFVEAL+KVQKSVS +DIEKH+KWM FGSA*DLGH L S S +
Sbjct: 483 TMCDFVEALMKVQKSVSSADIEKHKKWMTVFGSA*DLGHPLISSSTL 343
Score = 189 bits (408), Expect(4) = 2e-056
Identities = 78/102 (76%), Positives = 86/102 (84%)
Frame = -1 / +1
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGL 277
K M +VSG PK SHPLLML YV RRDTLL+LH+ LHKVAHGH VLGY +L*HVLDL GL
Sbjct: 361 KGMTKVSGGPKHSHPLLMLFYVCRRDTLLDLHEGLHKVAHGHWVLGYPIL*HVLDLFTGL 540
Query: 276 ACYLAPHAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLN 151
ACYLAPH +H* I AN+CQIISTIAFCPPSNL+DVNI YL+
Sbjct: 541 ACYLAPHTVH*SITANICQIISTIAFCPPSNLIDVNIHSYLS 666
Score = 186 bits (401), Expect(2) = 1e-050
Identities = 86/104 (82%), Positives = 88/104 (84%)
Frame = -2 / +2
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLIS 288
E D PRSQADPN+ IHF CFSMS ETLF TF RASTKSHM TGSLAI FDMFLIS
Sbjct: 350 EDDIRG*PRSQADPNTVIHFLCFSMSADETLFWTFMRASTKSHMVTGSLAIPFFDMFLIS 529
Query: 287 SRVLPAILRLMPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI 156
SRVLPAIL L+PFIEASRQTFVRSSPL*PSVLRATSSMLTS AI
Sbjct: 530 SRVLPAILHLIPFIEASRQTFVRSSPL*PSVLRATSSMLTSTAI 661
Score = 156 bits (335), Expect(2) = 7e-043
Identities = 70/106 (66%), Positives = 76/106 (71%)
Frame = +3 / -3
Query: 150 SSDSRRC*HRRGCSEDRRL*WR*SDKRLPRCLNEWHEAQDSRQDPRRDQEHVKGRDSQGP 329
S+DS C*HR GCSEDRRL*WR*SDK LP C NE +E QDSRQDP RDQEHVK DSQGP
Sbjct: 667 STDSCGC*HR*GCSEDRRL*WR*SDKCLP*CFNERYEVQDSRQDP*RDQEHVKEWDSQGP 488
Query: 330 GGHVRLCXXXXXXXXXCLAFRHREA*EVDG*VWVCLRPRPSAWVLF 467
HVRLC CL RHR+A*EVD VWV LRP S +++F
Sbjct: 487 SDHVRLCGGPHEGPEECLVCRHRKA*EVDDCVWVRLRPWSSPYIVF 350
Score = 66.6 bits (139), Expect(3) = 3e-028
Identities = 35/43 (81%), Positives = 35/43 (81%)
Frame = +2 / -2
Query: 155 R*PQMLTSTRLLGGQKAIVEMI*QTFAAMPQ*MA*GAR*QARP 283
R* MLTS RLLGGQKAIVEMI*Q FA M Q* *GAR*QARP
Sbjct: 662 R*LWMLTSMRLLGGQKAIVEMI*QMFAVMLQ*TV*GAR*QARP 534
Score = 62.5 bits (130), Expect(3) = 3e-028
Identities = 31/45 (68%), Positives = 34/45 (75%)
Frame = +2 / -2
Query: 335 PCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
PCATLWR *R RRVSRLQT*+S+RSG L LG PET I L +Q
Sbjct: 482 PCATLWRPS*RSRRVSRLQT*KSIRSG*LCLGPPETLVIPLYRLQ 348
Score = 46.9 bits (96), Expect(3) = 4e-062
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = +2 / -1
Query: 545 IDQRHELSCLFPVMLGIEFTIV 610
IDQRH+LSCLF VMLGI+FT++
Sbjct: 279 IDQRHKLSCLFSVMLGIKFTVI 214
Score = 40.9 bits (83), Expect(4) = 2e-056
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -1 / +2
Query: 603 VNSIPSITGNRQDSSCLWSI 544
VN IPSIT NRQDS CLWS+
Sbjct: 221 VNLIPSITENRQDSLCLWSM 280
Score = 39.1 bits (79), Expect(2) = 7e-043
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3 / -2
Query: 546 *TRGTSYLVCFQ*C*ELSSRSFQF 617
*T+GT+YLV FQ*C*ELSS+ + F
Sbjct: 278 *TKGTNYLVYFQ*C*ELSSQLYYF 207
Score = 35.4 bits (71), Expect(3) = 3e-028
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1 / -3
Query: 544 YRPEARAILSVSSDARN*VH 603
+RP+A+ ILS+ SDARN*VH
Sbjct: 280 HRPKAQTILSIFSDARN*VH 221
Score = 35.0 bits (70), Expect(2) = 1e-050
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -3 / +1
Query: 601 ELNS*HHWKQTR*LVPLVY 545
ELNS*HH K TR* VPLVY
Sbjct: 223 ELNS*HH*K*TR*FVPLVY 279
Score = 23.5 bits (45), Expect(4) = 2e-056
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -3 / +1
Query: 511 HCYGMPCQP 485
+CY +PCQP
Sbjct: 310 YCYQIPCQP 336
Score = 23.5 bits (45), Expect(4) = 2e-056
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3 / +2
Query: 544 MKQDHRRVTPY 512
M+QDH+R+T Y
Sbjct: 278 MQQDHQRITTY 310
Score = 22.1 bits (42), Expect(3) = 4e-062
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / -1
Query: 631 FLLSNVSHQVAVAASI 678
F L NV HQ+AVAA +
Sbjct: 189 F*L*NVPHQLAVAAIV 142
>gb|CD426164.1|CD426164 SA1_19_E05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_19_E05_A002 3', mRNA sequence
Length = 687
Score = 171 bits (368), Expect(4) = 1e-057
Identities = 73/81 (90%), Positives = 75/81 (92%)
Frame = +1 / +2
Query: 232 CRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPSDIEKHEK 411
CRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSP+DIEKHEK
Sbjct: 2 CRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPADIEKHEK 181
Query: 412 WMAEFGSA*DLGHLLGSCSNI 474
WM EFGSA* LGH L S S +
Sbjct: 182 WMTEFGSA*YLGHPLRSSSTL 244
Score = 155 bits (332), Expect(3) = 1e-052
Identities = 69/79 (87%), Positives = 71/79 (89%)
Frame = -2 / -1
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLIS 288
E+D PR QADPNS IHFSCFSMS GETLF TFTRASTKSHMATGSLAISSFDMFLIS
Sbjct: 237 EEDLRG*PRYQADPNSVIHFSCFSMSAGETLFWTFTRASTKSHMATGSLAISSFDMFLIS 58
Query: 287 SRVLPAILRLMPFIEASRQ 231
SRVLPAILRL+PFIEASRQ
Sbjct: 57 SRVLPAILRLIPFIEASRQ 1
Score = 147 bits (315), Expect(3) = 1e-046
Identities = 62/75 (82%), Positives = 65/75 (86%)
Frame = -1 / -3
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGL 277
K M EVSG PKLSHPLLML YV RRDTLL+LHQ LHKVAHGH VLGYLVL*HVLDL+AGL
Sbjct: 226 KGMTEVSGGPKLSHPLLMLFYVCRRDTLLDLHQGLHKVAHGHWVLGYLVL*HVLDLIAGL 47
Query: 276 ACYLAPHAIH*GIAA 232
ACYLAPH +H* I A
Sbjct: 46 ACYLAPHTVH*SITA 2
Score = 122 bits (261), Expect(3) = 3e-039
Identities = 54/79 (68%), Positives = 57/79 (72%)
Frame = +3 / +1
Query: 231 LPRCLNEWHEAQDSRQDPRRDQEHVKGRDSQGPGGHVRLCXXXXXXXXXCLAFRHREA*E 410
LP C NE +EAQDSRQDPR DQEHVKGRDSQGP GHVRLC CLA RHR+A*E
Sbjct: 1 LP*CFNERYEAQDSRQDPR*DQEHVKGRDSQGPSGHVRLCGGPGEGPEECLACRHRKA*E 180
Query: 411 VDG*VWVCLRPRPSAWVLF 467
VD *VWV L PR S + F
Sbjct: 181 VDD*VWVRLIPRSSP*IFF 237
Score = 81.3 bits (171), Expect(3) = 2e-023
Identities = 35/61 (57%), Positives = 39/61 (63%)
Frame = -3 / -2
Query: 484 TQNECLNRTQADGRGLRQTQTQPSTSHASLCLKARHXXXXXXXXXXSRTWPPGPWLSRPL 305
T L + D RG+R+TQTQ STSHA LCL+ARH SRTWP GPWLSRPL
Sbjct: 254 TTQTMLKKI*GDDRGIRRTQTQSSTSHAFLCLQARHSSGPSPGPPQSRTWPLGPWLSRPL 75
Query: 304 T 302
T
Sbjct: 74 T 72
Score = 79.9 bits (168), Expect(3) = 8e-025
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2 / +3
Query: 332 WPCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
WPCATLWR W*R RRVSRLQT*+SMRSG LSLG P+TS I L +Q
Sbjct: 102 WPCATLWRPW*RSRRVSRLQT*KSMRSG*LSLGPPDTSVIPLDLLQ 239
Score = 51.0 bits (105), Expect(4) = 1e-057
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2 / +3
Query: 545 IDQRHELSCLFPVMLGIEFTIVSVL 619
IDQRHEL CLF VMLGI FTI+S+L
Sbjct: 309 IDQRHELYCLFSVMLGINFTIISIL 383
Score = 46.9 bits (96), Expect(3) = 1e-052
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -3
Query: 544 MKQDHRRVTPYHCYGMPCQP 485
M+QDH+R+T YHCY +PCQP
Sbjct: 310 MQQDHQRITAYHCYEIPCQP 251
Score = 46.0 bits (94), Expect(3) = 3e-039
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3 / +1
Query: 546 *TRGTSYLVCFQ*C*ELSSRSFQFLV 623
*TRGT+Y+V FQ*C*EL SR FQFL+
Sbjct: 310 *TRGTNYIVYFQ*C*ELISRLFQFLI 387
Score = 45.5 bits (93), Expect(3) = 8e-025
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1 / +2
Query: 544 YRPEARAILSVSSDARN*VHDRFSSWYM 627
+RPEAR ILS+ SDARN* HD F+S Y+
Sbjct: 308 HRPEARTILSIFSDARN*FHDYFNS*YV 391
Score = 44.6 bits (91), Expect(3) = 1e-052
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / -3
Query: 627 HIPRTETIVNSIPSITGNRQDSSCLWSI 544
+I R E IV IPSIT NRQ SSCLWS+
Sbjct: 391 YISRIEIIVKLIPSITENRQYSSCLWSM 308
Score = 41.8 bits (85), Expect(3) = 1e-046
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3 / -2
Query: 625 YTKN*NDRELNS*HHWKQTR*LVPLVY 545
+ KN*N+RE+NS*HH K T * VPLVY
Sbjct: 389 HIKN*NNREINS*HH*K*TI*FVPLVY 309
Score = 38.6 bits (78), Expect(3) = 2e-023
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2 / -1
Query: 623 YQELKRS*TQFLASLETDKIARASGL 546
YQELK S* FLASL+ D I RASGL
Sbjct: 387 YQELK*S*N*FLASLKIDNIVRASGL 310
Score = 37.3 bits (75), Expect(3) = 1e-046
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / -2
Query: 548 LYEARPPAGNTVSLLRNAVST 486
+Y RPPA N++SLLRN VST
Sbjct: 314 VYATRPPADNSISLLRNTVST 252
Score = 35.4 bits (71), Expect(4) = 1e-057
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = +3 / +3
Query: 486 G*HGIP*Q*YGVTRRWSCFI*TRGTSY 566
G*HGI *Q*Y V R WSC I R Y
Sbjct: 252 G*HGIS*Q*YAVIRWWSCCIDQRHELY 332
Score = 33.1 bits (66), Expect(3) = 3e-039
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1 / +1
Query: 487 VDTAFRSNDTVLPAGGLAS 543
VDT FRSND +L AGGL +
Sbjct: 253 VDTVFRSNDMLLSAGGLVA 309
Score = 27.6 bits (54), Expect(3) = 2e-023
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1 / -1
Query: 540 SKTTGG*HRIIATECRVN 487
+KTT G* IIAT+ RVN
Sbjct: 306 NKTTSG*QHIIATKYRVN 253
Score = 27.2 bits (53), Expect(3) = 8e-025
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +2 / +3
Query: 233 AAMPQ*MA*GAR*QARPA 286
A M Q* *GAR*QARPA
Sbjct: 3 AVMLQ*TV*GAR*QARPA 56
Score = 23.5 bits (45), Expect(4) = 1e-057
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / +1
Query: 689 PCLVEGISQEP 721
P +EGISQEP
Sbjct: 460 PVFIEGISQEP 492
>gb|CW387593.1|CW387593 fsbb001f072a02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072a02, DNA
sequence
Length = 665
Score = 209 bits (451), Expect = 4e-053
Identities = 90/107 (84%), Positives = 96/107 (89%)
Frame = +1 / -1
Query: 154 QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPV 333
QIA DVNIDEVARRTEGYSGDDLTNVCRDASMNGMR KIAGKTR+EIKNMSK+ IAKDPV
Sbjct: 365 QIAVDVNIDEVARRTEGYSGDDLTNVCRDASMNGMRCKIAGKTREEIKNMSKNGIAKDPV 186
Query: 334 AMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA*DLGHLLGSCSNI 474
MCDFVEAL+KVQKSVS +DIEKH+KWM FGSA*DLGH L S S +
Sbjct: 185 TMCDFVEALMKVQKSVSSADIEKHKKWMTVFGSA*DLGHPLISSSTL 45
Score = 189 bits (408), Expect(2) = 9e-048
Identities = 78/102 (76%), Positives = 86/102 (84%)
Frame = -1 / +3
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGL 277
K M +VSG PK SHPLLML YV RRDTLL+LH+ LHKVAHGH VLGY +L*HVLDL GL
Sbjct: 63 KGMTKVSGGPKHSHPLLMLFYVCRRDTLLDLHEGLHKVAHGHWVLGYPIL*HVLDLFTGL 242
Query: 276 ACYLAPHAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLN 151
ACYLAPH +H* I AN+CQIISTIAFCPPSNL+DVNI YL+
Sbjct: 243 ACYLAPHTVH*SITANICQIISTIAFCPPSNLIDVNIHSYLS 368
Score = 188 bits (404), Expect = 1e-046
Identities = 87/113 (76%), Positives = 90/113 (79%)
Frame = -2 / +1
Query: 494 VSTHTKRMFEQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAI 315
+ H E D PRSQADPN+ IHF CFSMS ETLF TF RASTKSHM TGSLAI
Sbjct: 25 IPCHHTNNVEDDIRG*PRSQADPNTVIHFLCFSMSADETLFWTFMRASTKSHMVTGSLAI 204
Query: 314 SSFDMFLISSRVLPAILRLMPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI 156
FDMFLISSRVLPAIL L+PFIEASRQTFVRSSPL*PSVLRATSSMLTS AI
Sbjct: 205 PFFDMFLISSRVLPAILHLIPFIEASRQTFVRSSPL*PSVLRATSSMLTSTAI 363
Score = 156 bits (335), Expect = 4e-037
Identities = 70/106 (66%), Positives = 76/106 (71%)
Frame = +3 / -3
Query: 150 SSDSRRC*HRRGCSEDRRL*WR*SDKRLPRCLNEWHEAQDSRQDPRRDQEHVKGRDSQGP 329
S+DS C*HR GCSEDRRL*WR*SDK LP C NE +E QDSRQDP RDQEHVK DSQGP
Sbjct: 369 STDSCGC*HR*GCSEDRRL*WR*SDKCLP*CFNERYEVQDSRQDP*RDQEHVKEWDSQGP 190
Query: 330 GGHVRLCXXXXXXXXXCLAFRHREA*EVDG*VWVCLRPRPSAWVLF 467
HVRLC CL RHR+A*EVD VWV LRP S +++F
Sbjct: 189 SDHVRLCGGPHEGPEECLVCRHRKA*EVDDCVWVRLRPWSSPYIVF 52
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 35/43 (81%), Positives = 35/43 (81%)
Frame = +2 / -2
Query: 155 R*PQMLTSTRLLGGQKAIVEMI*QTFAAMPQ*MA*GAR*QARP 283
R* MLTS RLLGGQKAIVEMI*Q FA M Q* *GAR*QARP
Sbjct: 364 R*LWMLTSMRLLGGQKAIVEMI*QMFAVMLQ*TV*GAR*QARP 236
Score = 62.5 bits (130), Expect(2) = 5e-023
Identities = 31/45 (68%), Positives = 34/45 (75%)
Frame = +2 / -2
Query: 335 PCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
PCATLWR *R RRVSRLQT*+S+RSG L LG PET I L +Q
Sbjct: 184 PCATLWRPS*RSRRVSRLQT*KSIRSG*LCLGPPETLVIPLYRLQ 50
Score = 22.1 bits (42), Expect(2) = 9e-048
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -3 / +1
Query: 511 HCYGMPCQPTQN 476
+CY +PC T N
Sbjct: 13 YCYQIPCHHTNN 48
>gb|CW105650.1|CW105650 104_475_11012989_116_34454_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012989, DNA
sequence
Length = 318
Score = 96.4 bits (204), Expect(3) = 6e-034
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = +1 / +1
Query: 328 PVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA*DLGHLLGSCSNI 474
PVAMCDFVEALVKVQKSVSP+DIEKHEKWM EFGSA* LGH L S S +
Sbjct: 1 PVAMCDFVEALVKVQKSVSPADIEKHEKWMTEFGSA*YLGHPLRSSSTL 147
Score = 85.8 bits (181), Expect(3) = 3e-032
Identities = 37/46 (80%), Positives = 38/46 (82%)
Frame = -2 / -2
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMAT 330
E+D PR QADPNS IHFSCFSMS GETLF TFTRASTKSHMAT
Sbjct: 140 EEDLRG*PRYQADPNSVIHFSCFSMSAGETLFWTFTRASTKSHMAT 3
Score = 84.5 bits (178), Expect(3) = 3e-028
Identities = 35/42 (83%), Positives = 36/42 (85%)
Frame = -1 / -1
Query: 456 KQMAEVSGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGH 331
K M EVSG PKLSHPLLML YV RRDTLL+LHQ LHKVAHGH
Sbjct: 129 KGMTEVSGGPKLSHPLLMLFYVCRRDTLLDLHQGLHKVAHGH 4
Score = 79.9 bits (168), Expect(3) = 7e-027
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2 / +2
Query: 332 WPCATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPETSAICLGPVQ 469
WPCATLWR W*R RRVSRLQT*+SMRSG LSLG P+TS I L +Q
Sbjct: 5 WPCATLWRPW*RSRRVSRLQT*KSMRSG*LSLGPPDTSVIPLDLLQ 142
Score = 51.0 bits (105), Expect(3) = 6e-034
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2 / +2
Query: 545 IDQRHELSCLFPVMLGIEFTIVSVL 619
IDQRHEL CLF VMLGI FTI+S+L
Sbjct: 212 IDQRHELYCLFSVMLGINFTIISIL 286
Score = 46.9 bits (96), Expect(3) = 3e-032
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = -3 / -1
Query: 544 MKQDHRRVTPYHCYGMPCQP 485
M+QDH+R+T YHCY +PCQP
Sbjct: 213 MQQDHQRITAYHCYEIPCQP 154
Score = 46.0 bits (94), Expect(3) = 7e-027
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3 / +3
Query: 546 *TRGTSYLVCFQ*C*ELSSRSFQFLV 623
*TRGT+Y+V FQ*C*EL SR FQFL+
Sbjct: 213 *TRGTNYIVYFQ*C*ELISRLFQFLI 290
Score = 44.6 bits (91), Expect(3) = 3e-032
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -1 / -1
Query: 627 HIPRTETIVNSIPSITGNRQDSSCLWSI 544
+I R E IV IPSIT NRQ SSCLWS+
Sbjct: 294 YISRIEIIVKLIPSITENRQYSSCLWSM 211
Score = 41.8 bits (85), Expect(3) = 3e-028
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = -3 / -3
Query: 625 YTKN*NDRELNS*HHWKQTR*LVPLVY 545
+ KN*N+RE+NS*HH K T * VPLVY
Sbjct: 292 HIKN*NNREINS*HH*K*TI*FVPLVY 212
Score = 37.3 bits (75), Expect(3) = 3e-028
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2 / -3
Query: 548 LYEARPPAGNTVSLLRNAVST 486
+Y RPPA N++SLLRN VST
Sbjct: 217 VYATRPPADNSISLLRNTVST 155
Score = 35.4 bits (71), Expect(3) = 6e-034
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = +3 / +2
Query: 486 G*HGIP*Q*YGVTRRWSCFI*TRGTSY 566
G*HGI *Q*Y V R WSC I R Y
Sbjct: 155 G*HGIS*Q*YAVIRWWSCCIDQRHELY 235
Score = 33.1 bits (66), Expect(3) = 7e-027
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1 / +3
Query: 487 VDTAFRSNDTVLPAGGLAS 543
VDT FRSND +L AGGL +
Sbjct: 156 VDTVFRSNDMLLSAGGLVA 212
>gb|CW236998.1|CW236998 104_693_11215924_148_37518_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215924, DNA
sequence
Length = 749
Score = 83.5 bits (176), Expect(2) = 3e-029
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = +1 / +2
Query: 154 QIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGM 258
QIA DVNIDEVARRTEGYSGDDLTNVCRDASMNGM
Sbjct: 644 QIAVDVNIDEVARRTEGYSGDDLTNVCRDASMNGM 748
Score = 75.3 bits (158), Expect(2) = 7e-028
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -1 / -1
Query: 159 YLNCSKINVDKCLSTFKIWKWNINTLLQP 73
YLNCSKINVDKCLSTFKIWKWNINTL +P
Sbjct: 221 YLNCSKINVDKCLSTFKIWKWNINTLFEP 135
Score = 72.1 bits (151), Expect(2) = 7e-028
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1 / -2
Query: 258 HAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLN 151
H +H* I AN+CQIISTIAFCPPSNL+DVNI YL+
Sbjct: 748 HTVH*SITANICQIISTIAFCPPSNLIDVNIHSYLS 641
Score = 70.7 bits (148), Expect(2) = 7e-022
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = -2 / -3
Query: 257 MPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI 156
+PFIEASRQTFVRSSPL*PSVLRATSSMLTS AI
Sbjct: 747 IPFIEASRQTFVRSSPL*PSVLRATSSMLTSTAI 646
Score = 68.4 bits (143), Expect(2) = 3e-029
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +1 / +3
Query: 70 RRLEKRIYIPLPDFESRKALININLRTVQI 159
RR EKRIYIPLPDFESRKALININLRTVQ+
Sbjct: 132 RRFEKRIYIPLPDFESRKALININLRTVQV 221
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 27/34 (79%), Positives = 28/34 (82%)
Frame = +3 / +1
Query: 150 SSDSRRC*HRRGCSEDRRL*WR*SDKRLPRCLNE 251
S+DS C*HR GCSEDRRL*WR*SDK LP C NE
Sbjct: 640 STDSCGC*HR*GCSEDRRL*WR*SDKCLP*CFNE 741
Score = 62.0 bits (129), Expect(2) = 4e-021
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2 / +1
Query: 74 GWRSVFIFHFQILKVERHLSTLILEQFR 157
G +SVFIFHFQILKVERHLSTLILEQFR
Sbjct: 136 GSKSVFIFHFQILKVERHLSTLILEQFR 219
Score = 56.5 bits (117), Expect(2) = 7e-022
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -3 / -3
Query: 160 LSELF*D*C**VPFYFQNLEVEYKYA 83
+ ELF*D*C**VPFYFQNLEVEYKYA
Sbjct: 222 IPELF*D*C**VPFYFQNLEVEYKYA 145
>gb|BF481081.1|BF481081 FM1_16_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 536
Score = 109 bits (233), Expect = 4e-023
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +1 / +1
Query: 10 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLR 147
KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLR
Sbjct: 397 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLR 534
Score = 107 bits (229), Expect = 2e-022
Identities = 41/46 (89%), Positives = 42/46 (91%)
Frame = -1 / -3
Query: 147 SKINVDKCLSTFKIWKWNINTLLQPSPQCLINIPWKICSSQNHNNF 10
SKINVDKCLSTFKIWKWNIN LL+P PQCLINIPWKI SSQNH NF
Sbjct: 534 SKINVDKCLSTFKIWKWNINALLKPPPQCLINIPWKIRSSQNHYNF 397
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 897,556,289
Number of Sequences: 832831
Number of extensions: 12667102
Number of successful extensions: 92195
Number of sequences better than 1.0e-020: 12
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 22693413262
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)