TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.1
(950 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW671472.1|AW671472 LG1_347_C12.b1_A002 Light Grown 1 (L... 381 e-105
gb|CN127879.1|CN127879 RHOH1_25_D05.g1_A002 Acid- and alkal... 132 3e-061
gb|CW432390.1|CW432390 fsbb001f147b04k0 Sorghum methylation... 182 3e-060
gb|CN129628.1|CN129628 RHOH1_36_B03.g1_A002 Acid- and alkal... 132 5e-059
gb|CN129542.1|CN129542 RHOH1_36_B03.b3_A002 Acid- and alkal... 132 5e-058
gb|CN140719.1|CN140719 OX1_46_B10.g1_A002 Oxidatively-stres... 120 5e-055
gb|CN127798.1|CN127798 RHOH1_25_D05.b1_A002 Acid- and alkal... 132 9e-052
gb|CW147347.1|CW147347 104_540_11139465_116_34996_037 Sorgh... 128 1e-048
gb|CW391703.1|CW391703 fsbb001f077p12k0 Sorghum methylation... 128 1e-047
gb|BE360223.1|BE360223 DG1_62_C07.b1_A002 Dark Grown 1 (DG1... 124 1e-046
gb|BE360993.1|BE360993 DG1_68_E11.g1_A002 Dark Grown 1 (DG1... 132 1e-039
gb|BG557772.1|BG557772 EM1_56_H06.g1_A002 Embryo 1 (EM1) So... 92 2e-038
gb|BE360326.1|BE360326 DG1_62_C07.g1_A002 Dark Grown 1 (DG1... 132 4e-038
gb|CF430008.1|CF430008 PH1_25_B05.g1_A002 Phosphorous-defic... 132 2e-037
gb|CW176126.1|CW176126 104_589_11158321_148_36583_015 Sorgh... 89 3e-037
gb|AW922579.1|AW922579 DG1_45_F02.g1_A002 Dark Grown 1 (DG1... 132 2e-036
gb|AW287022.2|AW287022 LG1_264_E07.b1_A002 Light Grown 1 (L... 124 5e-033
gb|BG241604.1|BG241604 RHIZ2_17_F04.g1_A003 Rhizome2 (RHIZ2... 132 8e-030
gb|CF427234.1|CF427234 PH1_4_F06.b1_A002 Phosphorous-defici... 132 8e-030
gb|BF481871.1|BF481871 FM1_22_D09.g1_A003 Floral-Induced Me... 130 4e-029
gb|CW357581.1|CW357581 fsbb001f024e23k0 Sorghum methylation... 128 1e-028
gb|CW366490.1|CW366490 fsbb001f039i08f0 Sorghum methylation... 128 1e-028
gb|BF586546.1|BF586546 FM1_29_E09.g1_A003 Floral-Induced Me... 127 3e-028
gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum m... 87 9e-028
gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation... 87 5e-027
gb|CF427262.1|CF427262 PH1_4_F06.g1_A002 Phosphorous-defici... 122 8e-027
gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation... 80 6e-023
gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation... 87 2e-022
gb|CW094129.1|CW094129 104_457_11000145_116_37477_039 Sorgh... 68 4e-022
gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorgh... 77 2e-021
gb|BF586623.1|BF586623 FM1_29_E09.b1_A003 Floral-Induced Me... 103 5e-021
gb|CW357580.1|CW357580 fsbb001f024e23f0 Sorghum methylation... 69 7e-021
>gb|AW671472.1|AW671472 LG1_347_C12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 674
Score = 381 bits (827), Expect = e-105
Identities = 149/152 (98%), Positives = 150/152 (98%)
Frame = -2 / +1
Query: 877 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLY 698
AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLY
Sbjct: 217 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLY 396
Query: 697 CRPHFDQLFKRTGSLDKSFEGTPKVVKPERNVGNENATKVSSAFAGTREKCVGCSKTVYP 518
CRPHFDQLFKRTGSLDKSFEGTPKVVKPERNVGNENA KVSSAFAGTREKCVGCSKTVYP
Sbjct: 397 CRPHFDQLFKRTGSLDKSFEGTPKVVKPERNVGNENAVKVSSAFAGTREKCVGCSKTVYP 576
Query: 517 TERVTVNNTMYHKSCFKCCHGGCTISPSNYIA 422
E+VTVNNTMYHKSCFKCCHGGCTISPSNYIA
Sbjct: 577 IEKVTVNNTMYHKSCFKCCHGGCTISPSNYIA 672
Score = 273 bits (590), Expect = 3e-072
Identities = 122/153 (79%), Positives = 122/153 (79%)
Frame = +3 / -1
Query: 420 CAM*LEGLMVHPPWQHLKQLLWYIXXXXXXXXXXXXXXXHPTHFSLVPAKALETLVAFSF 599
CAM*LEGLMVHPPWQHLKQLL YI HPTHFSLVPAKALETL AFSF
Sbjct: 674 CAM*LEGLMVHPPWQHLKQLL*YIVLLTVTFSIG*TVLLHPTHFSLVPAKALETLTAFSF 495
Query: 600 PTFLSGLTTLGXXXXXXXXXXXXXNSWSK*GLQ*STPSKEL*LASLRVPLQWWQRKQALW 779
PTFLSGLTT G NSWSK*GLQ*STPSKEL*LASLRVPLQWWQRKQALW
Sbjct: 494 PTFLSGLTTFGVPSKLLSKLPVLLNSWSK*GLQ*STPSKEL*LASLRVPLQWWQRKQALW 315
Query: 780 *MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 878
*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA
Sbjct: 314 *MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 216
Score = 234 bits (505), Expect(2) = 3e-066
Identities = 96/105 (91%), Positives = 99/105 (94%)
Frame = -1 / +3
Query: 734 ARQLQLLRGSALLQASLRPAVQEDRELGQELRRNSQGCQARKKRWE*ECY*SLKRLCWHQ 555
A QLQLLRGSALLQASLRPAVQEDRE GQELRRNS+GCQARKKRWE*EC *SLKRLCWHQ
Sbjct: 360 ACQLQLLRGSALLQASLRPAVQEDREFGQELRRNSKGCQARKKRWE*ECC*SLKRLCWHQ 539
Query: 554 REMCWMQQDSLSN*EGHC**HYVPQELLQVLPWRVHHQPF*LHCA 420
REMCWMQQDSLSN*EG+C HYV QELLQVLPWR+HHQPF*LHCA
Sbjct: 540 REMCWMQQDSLSN*EGYCQQHYVSQELLQVLPWRMHHQPF*LHCA 674
Score = 195 bits (421), Expect(2) = 5e-052
Identities = 85/96 (88%), Positives = 91/96 (94%)
Frame = +2 / -3
Query: 422 RNVVRRADGAPSMAALEAALVVHSVINSDPLSWIDCLAASNTFLSGASKGA*DFSSILIP 601
RNVVRRADGA SMAALEAALV+HSV++S+ L+WIDCLAASNTFLSGASKGA*DF+SILIP
Sbjct: 672 RNVVRRADGASSMAALEAALVIHSVVDSNLLNWIDCLAASNTFLSGASKGA*DFNSILIP 493
Query: 602 NVSFWLDNLGSSFEALVQAPCPLEQLVEVRPAVEHS 709
NVSFWLDNL SSFEALVQ P PLEQLVEVRPAVEHS
Sbjct: 492 NVSFWLDNLWSSFEALVQTPGPLEQLVEVRPAVEHS 385
Score = 189 bits (408), Expect = 4e-047
Identities = 86/95 (90%), Positives = 86/95 (90%)
Frame = -3 / +2
Query: 708 ECSTAGLTSTSCSRGQGAWTRASKELPRLSSQKETLGMRMLLKSQAPLLAPERNVLDAAR 529
ECSTAGLTSTSCSRG G WTRASKEL RLSSQKETLGMRMLLKSQAPLLAPERNVLDAAR
Sbjct: 386 ECSTAGLTSTSCSRGPGVWTRASKELQRLSSQKETLGMRMLLKSQAPLLAPERNVLDAAR 565
Query: 528 QSIQLRGSLLITLCTTRAASSAAMEGAPSALLTTL 424
QSIQLR L TLC TRAASSAAME APSALLTTL
Sbjct: 566 QSIQLRRLLSTTLCITRAASSAAMEDAPSALLTTL 670
Score = 116 bits (248), Expect(2) = 5e-029
Identities = 52/77 (67%), Positives = 52/77 (67%)
Frame = +1 / -2
Query: 499 *Q*PSQLDRLSCCIQHISLWCQXXXXXXXXXXXXXXFFLA*QPWEFLRXXXXXXXXXXTA 678
*Q*PSQLDRLSCCIQHISLWCQ FFLA*QP EFLR TA
Sbjct: 595 *Q*PSQLDRLSCCIQHISLWCQQRRLRL*QHSHSQRFFLA*QPLEFLRSSCPNSRSS*TA 416
Query: 679 GRSEACSRALPRRSCSW 729
GRSEACSRALPRRSCSW
Sbjct: 415 GRSEACSRALPRRSCSW 365
Score = 40.0 bits (81), Expect(2) = 3e-066
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -1 / +3
Query: 845 QVHRLRQDGVPCGQAHRR 792
QVHRLRQDGVP QAHRR
Sbjct: 249 QVHRLRQDGVPRRQAHRR 302
Score = 33.1 bits (66), Expect(2) = 5e-029
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / -2
Query: 421 AQCS*KG*WCTLH 459
AQCS*KG*WC LH
Sbjct: 673 AQCS*KG*WCILH 635
Score = 30.9 bits (61), Expect(2) = 5e-052
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / -2
Query: 811 QGTPSCRRRCT 843
+GTPSCRRRCT
Sbjct: 283 RGTPSCRRRCT 251
>gb|CN127879.1|CN127879 RHOH1_25_D05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_D05_A002 5', mRNA sequence
Length = 692
Score = 132 bits (283), Expect(2) = 3e-061
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / +3
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 354 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 533
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 534 YCKHHFSQLFKEKGSYNHL 590
Score = 124 bits (266), Expect(2) = 3e-061
Identities = 44/75 (58%), Positives = 57/75 (76%)
Frame = -2 / +3
Query: 862 FQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHF 683
F GT KC C KTVY +D+L+ D +H++CF+C HCK TL L+NY+SFEGV YC+ HF
Sbjct: 69 FSGTQQKCKVCTKTVYPMDQLSTDGVAFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKAHF 248
Query: 682 DQLFKRTGSLDKSFE 638
+QLFK TGS +KSF+
Sbjct: 249 EQLFKETGSYNKSFQ 293
Score = 73.5 bits (154), Expect(2) = 3e-022
Identities = 33/78 (42%), Positives = 37/78 (47%)
Frame = +3 / -2
Query: 354 WLKFPFSLISWMWWCLQYSFPSCAM*LEGLMVHPPWQHLKQLLWYIXXXXXXXXXXXXXX 533
WL PFSL S WCLQ PS A *LEG++ PPW+HLK LWY
Sbjct: 586 WL*LPFSLKS*EKWCLQ*RMPSKAA*LEGVIAQPPWEHLKHDLWYAFSSTVTFSRGYAVL 407
Query: 534 XHPTHFSLVPAKALETLV 587
H S VP L L+
Sbjct: 406 PQVAHLSCVPENILAALL 353
Score = 53.3 bits (110), Expect(2) = 3e-022
Identities = 30/62 (48%), Positives = 31/62 (50%)
Frame = +3 / -2
Query: 672 NSWSK*GLQ*STPSKEL*LASLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVV 851
NS SK LQ TPS E *L RV LQ W KQ W S S S YTVL +H
Sbjct: 259 NSCSKWALQYGTPSNEE*LLRERVDLQCWHLKQERWKATPSVESWSIGYTVLVHTLHFCC 80
Query: 852 VP 857
VP
Sbjct: 79 VP 74
>gb|CW432390.1|CW432390 fsbb001f147b04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147b04, DNA
sequence
Length = 564
Score = 182 bits (391), Expect(2) = 3e-060
Identities = 68/72 (94%), Positives = 72/72 (100%)
Frame = -2 / -3
Query: 511 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNFSQLENDHEK 332
+VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNFSQLENDHEK
Sbjct: 310 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNFSQLENDHEK 131
Query: 331 TSQAGSLEEDEQ 296
TSQAGSLE++E+
Sbjct: 130 TSQAGSLEDEEE 95
Score = 139 bits (298), Expect(2) = 2e-040
Identities = 57/75 (76%), Positives = 59/75 (78%)
Frame = +3 / +3
Query: 267 SVVVLSDQYXXXXXXXDPACDVFSWSFSSWLKFPFSLISWMWWCLQYSFPSCAM*LEGLM 446
S V++ DPACDVFS SFSSWLKFPFSLIS MWWCLQ SFPSCAM*LEGLM
Sbjct: 66 SSVIVLSD*YSSSSSSDPACDVFS*SFSSWLKFPFSLIS*MWWCLQ*SFPSCAM*LEGLM 245
Query: 447 VHPPWQHLKQLLWYI 491
VHPPWQHLKQLL YI
Sbjct: 246 VHPPWQHLKQLL*YI 290
Score = 125 bits (267), Expect(2) = 6e-041
Identities = 50/61 (81%), Positives = 55/61 (90%)
Frame = -1 / -2
Query: 509 GHC**HYVPQELLQVLPWRVHHQPF*LHCARGEAVLQAPPHPADQGEGELQPA*E*PRED 330
G+C HYV QELLQVLPWR+HHQPF*LHCARGEA+LQAPPH ADQ EG+LQPA*E* RED
Sbjct: 308 GYCQQHYVSQELLQVLPWRMHHQPF*LHCARGEALLQAPPHSADQREGKLQPA*E*SRED 129
Query: 329 I 327
+
Sbjct: 128 V 126
Score = 73.5 bits (154), Expect(2) = 2e-025
Identities = 35/66 (53%), Positives = 35/66 (53%)
Frame = -3 / -1
Query: 504 LLITLCTTRAASSAAMEGAPSALLTTLXXXXXXXXXXXXXXXXXXXXXXXXXRMTTRRHH 325
L TLC TRAASSAAME APSALLTTL RM TRR H
Sbjct: 303 LSTTLCITRAASSAAMEDAPSALLTTLRTRGSSTASTTTFS*SKRRETSASLRMITRRRH 124
Query: 324 RLGHWR 307
RLGHWR
Sbjct: 123 RLGHWR 106
Score = 72.1 bits (151), Expect(2) = 3e-060
Identities = 28/36 (77%), Positives = 31/36 (86%)
Frame = -3 / -1
Query: 306 RMNKSIDH*AQPQMNNESSCICLEHYVFLWRGSISV 199
RM KSI+H*A QMNN SSCICLEHY+FLW GSIS+
Sbjct: 108 RMKKSINH*ALSQMNN*SSCICLEHYIFLWHGSISI 1
Score = 70.3 bits (147), Expect(3) = 4e-027
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = +1 / +1
Query: 199 N*NRTTPQKYIVL*ANARGFIIHLWLCSVINTLVHPP 309
N*NRT PQKYIVL*ANAR IIHL CSVINTL+HPP
Sbjct: 1 N*NRTMPQKYIVL*ANARRLIIHL**CSVINTLLHPP 111
Score = 64.3 bits (134), Expect(2) = 6e-041
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = -2 / -3
Query: 307 EDEQEY*SLSTTTDE**ILLHLPRALCISVAWFDFS 200
EDE+EY*SLST TDE* I LHL RAL ISVAWFDF+
Sbjct: 109 EDEEEY*SLSTITDE*LIFLHLLRALYISVAWFDFN 2
Score = 63.8 bits (133), Expect(2) = 2e-025
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = -1 / -2
Query: 296 RVLITEHNHR*IMNPLAFA*STMYFCGVVRFQ 201
RVLITEH HR*I+N LAFA*ST+YFCG+VRFQ
Sbjct: 98 RVLITEHYHR*IINLLAFA*STIYFCGMVRFQ 3
Score = 57.0 bits (118), Expect(3) = 4e-027
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +2 / +2
Query: 422 RNVVRRADGAPSMAALEAALVVHSVINSD 508
RNVVRRADGA SMAALEAALV+HSV++S+
Sbjct: 221 RNVVRRADGASSMAALEAALVIHSVVDSN 307
Score = 48.3 bits (99), Expect(2) = 2e-040
Identities = 20/26 (76%), Positives = 21/26 (80%)
Frame = +2 / +2
Query: 203 EIEPRHRNT*CSRQMQEDSLFICGCA 280
EIEP HRN *CS+QMQED LFIC A
Sbjct: 5 EIEPCHRNI*CSKQMQED*LFICDSA 82
Score = 33.6 bits (67), Expect(3) = 4e-027
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +1 / +1
Query: 307 PPVTQPVMSSRGHSQ 351
PPVTQPV SSR HSQ
Sbjct: 106 PPVTQPVTSSRDHSQ 150
>gb|CN129628.1|CN129628 RHOH1_36_B03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_B03_A002 5', mRNA sequence
Length = 784
Score = 132 bits (283), Expect(2) = 5e-059
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / +2
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 398 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 577
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 578 YCKHHFSQLFKEKGSYNHL 634
Score = 117 bits (250), Expect(2) = 5e-059
Identities = 43/75 (57%), Positives = 55/75 (73%)
Frame = -2 / +2
Query: 862 FQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHF 683
F GT KC KTVY +D+L+ D H++CF+C HCK TL L+NY+SFEGV YC+ HF
Sbjct: 113 FSGTQQKCKVRTKTVYPMDQLSTDGVALHRSCFKCQHCKSTLSLSNYSSFEGVPYCKAHF 292
Query: 682 DQLFKRTGSLDKSFE 638
+QLFK TGS +KSF+
Sbjct: 293 EQLFKETGSYNKSFQ 337
Score = 73.5 bits (154), Expect(2) = 2e-022
Identities = 33/78 (42%), Positives = 37/78 (47%)
Frame = +3 / -2
Query: 354 WLKFPFSLISWMWWCLQYSFPSCAM*LEGLMVHPPWQHLKQLLWYIXXXXXXXXXXXXXX 533
WL PFSL S WCLQ PS A *LEG++ PPW+HLK LWY
Sbjct: 630 WL*LPFSLKS*EKWCLQ*RMPSKAA*LEGVIAQPPWEHLKHDLWYAFSSTVTFSRGYAVL 451
Query: 534 XHPTHFSLVPAKALETLV 587
H S VP L L+
Sbjct: 450 PQVAHLSCVPENILAALL 397
Score = 53.8 bits (111), Expect(2) = 2e-022
Identities = 30/62 (48%), Positives = 32/62 (51%)
Frame = +3 / -2
Query: 672 NSWSK*GLQ*STPSKEL*LASLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVV 851
NS SK LQ TPS E *L RV LQ W KQ W S S S YTVL + +H
Sbjct: 303 NSCSKWALQYGTPSNEE*LLRERVDLQCWHLKQERWRATPSVESWSIGYTVLVRTLHFCC 124
Query: 852 VP 857
VP
Sbjct: 123 VP 118
>gb|CN129542.1|CN129542 RHOH1_36_B03.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_B03_A002 3', mRNA sequence
Length = 819
Score = 132 bits (283), Expect(2) = 5e-058
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / +2
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 296 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 475
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 476 YCKHHFSQLFKEKGSYNHL 532
Score = 114 bits (243), Expect(2) = 5e-058
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = -2 / +2
Query: 862 FQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHF 683
F GT KC KTVY +D+L+ H++CF+C HCK TL L+NY+SFEGV YC+ HF
Sbjct: 11 FSGTQQKCKVRTKTVYPMDQLSTXGVALHRSCFKCQHCKSTLSLSNYSSFEGVPYCKAHF 190
Query: 682 DQLFKRTGSLDKSFE 638
+QLFK TGS +KSF+
Sbjct: 191 EQLFKETGSYNKSFQ 235
Score = 73.5 bits (154), Expect(2) = 2e-022
Identities = 33/78 (42%), Positives = 37/78 (47%)
Frame = +3 / -1
Query: 354 WLKFPFSLISWMWWCLQYSFPSCAM*LEGLMVHPPWQHLKQLLWYIXXXXXXXXXXXXXX 533
WL PFSL S WCLQ PS A *LEG++ PPW+HLK LWY
Sbjct: 528 WL*LPFSLKS*EKWCLQ*RMPSKAA*LEGVIAQPPWEHLKHDLWYAFSSTVTFSRGYAVL 349
Query: 534 XHPTHFSLVPAKALETLV 587
H S VP L L+
Sbjct: 348 PQVAHLSCVPENILAALL 295
Score = 53.8 bits (111), Expect(2) = 2e-022
Identities = 30/62 (48%), Positives = 32/62 (51%)
Frame = +3 / -1
Query: 672 NSWSK*GLQ*STPSKEL*LASLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVV 851
NS SK LQ TPS E *L RV LQ W KQ W S S S YTVL + +H
Sbjct: 201 NSCSKWALQYGTPSNEE*LLRERVDLQCWHLKQERWRATPSVESWSIGYTVLVRTLHFCC 22
Query: 852 VP 857
VP
Sbjct: 21 VP 16
>gb|CN140719.1|CN140719 OX1_46_B10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_B10_A002 5', mRNA sequence
Length = 544
Score = 120 bits (257), Expect(2) = 5e-055
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = -2 / +1
Query: 862 FQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHF 683
F GT KC C KTVY +D+L+ D +H++CF+C HCK TL L+NY+SFEGV YC+ HF
Sbjct: 58 FSGTQQKCKVCTKTVYPMDQLSTDGVAFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKAHF 237
Query: 682 DQLFKRTGSLDKSFE 638
+QLFK T S +KSF+
Sbjct: 238 EQLFKETVSYNKSFQ 282
Score = 116 bits (247), Expect(2) = 5e-055
Identities = 41/65 (63%), Positives = 48/65 (73%)
Frame = -2 / +1
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 343 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 522
Query: 406 YCKHH 392
YCKHH
Sbjct: 523 YCKHH 537
>gb|CN127798.1|CN127798 RHOH1_25_D05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_D05_A002 3', mRNA sequence
Length = 720
Score = 132 bits (283), Expect(2) = 9e-052
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / +2
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 212 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 391
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 392 YCKHHFSQLFKEKGSYNHL 448
Score = 93.2 bits (197), Expect(2) = 9e-052
Identities = 31/48 (64%), Positives = 41/48 (85%)
Frame = -2 / +2
Query: 781 YHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLFKRTGSLDKSFE 638
+H++CF+C HCK TL L+NY+SFEGV YC+ HF+QLFK TGS +KSF+
Sbjct: 8 FHRSCFKCQHCKSTLSLSNYSSFEGVPYCKAHFEQLFKETGSYNKSFQ 151
>gb|CW147347.1|CW147347 104_540_11139465_116_34996_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139465, DNA
sequence
Length = 703
Score = 128 bits (274), Expect(3) = 1e-048
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = -2 / +1
Query: 877 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLA 728
AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLK+A
Sbjct: 58 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKVA 207
Score = 117 bits (251), Expect(3) = 2e-039
Identities = 49/51 (96%), Positives = 51/51 (100%)
Frame = +3 / -3
Query: 726 LASLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 878
+A+LRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA
Sbjct: 209 VATLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 57
Score = 86.3 bits (182), Expect(2) = 2e-021
Identities = 34/41 (82%), Positives = 35/41 (85%)
Frame = -2 / +3
Query: 736 KLANYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKVVKP 614
+LANYNSFEGVLYCRPHFDQLFKRTGSLDKSFEG P
Sbjct: 342 QLANYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGIISFFSP 464
Score = 69.3 bits (145), Expect(3) = 1e-048
Identities = 32/36 (88%), Positives = 32/36 (88%)
Frame = -1 / +2
Query: 734 ARQLQLLRGSALLQASLRPAVQEDRELGQELRRNSQ 627
A QLQLLRGSALLQASLRPAVQEDRE GQELRR Q
Sbjct: 344 ACQLQLLRGSALLQASLRPAVQEDREFGQELRRYHQ 451
Score = 52.4 bits (108), Expect(3) = 2e-039
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +2 / -3
Query: 635 SFEALVQAPCPLEQLVEVRPAVEHS 709
+FEALVQ P PLEQLVEVRPAVEHS
Sbjct: 443 TFEALVQTPGPLEQLVEVRPAVEHS 369
Score = 40.0 bits (81), Expect(2) = 2e-021
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -1 / +3
Query: 845 QVHRLRQDGVPCGQAHRR 792
QVHRLRQDGVP QAHRR
Sbjct: 90 QVHRLRQDGVPRRQAHRR 143
Score = 39.6 bits (80), Expect(3) = 1e-048
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2 / +3
Query: 637 GTPKVVKPERNVGNE 593
GTPKVVKPERNVGNE
Sbjct: 528 GTPKVVKPERNVGNE 572
Score = 35.9 bits (72), Expect(3) = 2e-039
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +2 / -3
Query: 593 LIPNVSFWLDNLGSS 637
LIPNVSFWLDNL SS
Sbjct: 572 LIPNVSFWLDNLWSS 528
>gb|CW391703.1|CW391703 fsbb001f077p12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077p12, DNA
sequence
Length = 760
Score = 128 bits (274), Expect(2) = 1e-047
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = -2 / +1
Query: 877 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLA 728
AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLK+A
Sbjct: 214 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKVA 363
Score = 117 bits (251), Expect(3) = 3e-038
Identities = 49/51 (96%), Positives = 51/51 (100%)
Frame = +3 / -3
Query: 726 LASLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 878
+A+LRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA
Sbjct: 365 VATLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 213
Score = 86.3 bits (182), Expect(2) = 1e-047
Identities = 34/41 (82%), Positives = 35/41 (85%)
Frame = -2 / +3
Query: 736 KLANYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKVVKP 614
+LANYNSFEGVLYCRPHFDQLFKRTGSLDKSFEG P
Sbjct: 498 QLANYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGIISFFSP 620
Score = 69.3 bits (145), Expect(3) = 3e-021
Identities = 32/36 (88%), Positives = 32/36 (88%)
Frame = -1 / +2
Query: 734 ARQLQLLRGSALLQASLRPAVQEDRELGQELRRNSQ 627
A QLQLLRGSALLQASLRPAVQEDRE GQELRR Q
Sbjct: 500 ACQLQLLRGSALLQASLRPAVQEDREFGQELRRYHQ 607
Score = 52.4 bits (108), Expect(3) = 3e-038
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +2 / -3
Query: 635 SFEALVQAPCPLEQLVEVRPAVEHS 709
+FEALVQ P PLEQLVEVRPAVEHS
Sbjct: 599 TFEALVQTPGPLEQLVEVRPAVEHS 525
Score = 40.0 bits (81), Expect(3) = 3e-021
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -1 / +3
Query: 845 QVHRLRQDGVPCGQAHRR 792
QVHRLRQDGVP QAHRR
Sbjct: 246 QVHRLRQDGVPRRQAHRR 299
Score = 35.4 bits (71), Expect(3) = 3e-021
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -1 / +2
Query: 638 RNSQGCQARKKRW 600
RNS+GCQARKKRW
Sbjct: 683 RNSKGCQARKKRW 721
Score = 32.2 bits (64), Expect(3) = 3e-038
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2 / -3
Query: 599 PNVSFWLDNLGSS 637
PNVSFWLDNL SS
Sbjct: 722 PNVSFWLDNLWSS 684
>gb|BE360223.1|BE360223 DG1_62_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 597
Score = 124 bits (266), Expect(3) = 1e-046
Identities = 44/75 (58%), Positives = 57/75 (76%)
Frame = -2 / +2
Query: 862 FQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHF 683
F GT KC C KTVY +D+L+ D +H++CF+C HCK TL L+NY+SFEGV YC+ HF
Sbjct: 149 FSGTQQKCKVCTKTVYPMDQLSTDGVAFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKAHF 328
Query: 682 DQLFKRTGSLDKSFE 638
+QLFK TGS +KSF+
Sbjct: 329 EQLFKETGSYNKSFQ 373
Score = 76.2 bits (160), Expect(3) = 1e-046
Identities = 26/45 (57%), Positives = 32/45 (71%)
Frame = -2 / +2
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGG 452
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGG
Sbjct: 434 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGG 568
Score = 25.8 bits (50), Expect(3) = 1e-046
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +3
Query: 457 GGCTISPSNY 428
GGC I+PSNY
Sbjct: 564 GGCAITPSNY 593
>gb|BE360993.1|BE360993 DG1_68_E11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 132 bits (283), Expect(2) = 1e-039
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / +2
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 146 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 325
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 326 YCKHHFSQLFKEKGSYNHL 382
Score = 52.4 bits (108), Expect(2) = 1e-039
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / +2
Query: 721 NSFEGVLYCRPHFDQLFKRTGSLDKSFE 638
+SFEGV YC+ HF+QLFK TGS +KSF+
Sbjct: 2 SSFEGVPYCKAHFEQLFKETGSYNKSFQ 85
>gb|BG557772.1|BG557772 EM1_56_H06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 275
Score = 92.3 bits (195), Expect(3) = 2e-038
Identities = 35/38 (92%), Positives = 38/38 (100%)
Frame = -2 / +2
Query: 409 LYCKHHHIQLIKEKGNFSQLENDHEKTSQAGSLEEDEQ 296
LYCKHHHIQLIKEKGNFSQLENDHEKTSQAGSLE++E+
Sbjct: 2 LYCKHHHIQLIKEKGNFSQLENDHEKTSQAGSLEDEEE 115
Score = 82.2 bits (173), Expect(3) = 2e-038
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = -3 / +3
Query: 306 RMNKSIDH*AQPQMNNESSCICLEHYVFLWRGSISVLPMEV 184
RM KSI+H*A QMNN SSCICLEHY+FLW GSIS+LPME+
Sbjct: 102 RMKKSINH*ALSQMNN*SSCICLEHYIFLWHGSISILPMEL 224
Score = 82.2 bits (173), Expect(3) = 3e-021
Identities = 35/42 (83%), Positives = 37/42 (88%)
Frame = +1 / -1
Query: 184 DLHW*N*NRTTPQKYIVL*ANARGFIIHLWLCSVINTLVHPP 309
+LHW*N*NRT PQKYIVL*ANAR IIHL CSVINTL+HPP
Sbjct: 224 ELHW*N*NRTMPQKYIVL*ANARRLIIHL**CSVINTLLHPP 99
Score = 78.5 bits (165), Expect(3) = 4e-028
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = -1 / +1
Query: 296 RVLITEHNHR*IMNPLAFA*STMYFCGVVRFQFYQWRS 183
RVLITEH HR*I+N LAFA*ST+YFCG+VRFQFYQW S
Sbjct: 112 RVLITEHYHR*IINLLAFA*STIYFCGMVRFQFYQWSS 225
Score = 75.8 bits (159), Expect(3) = 1e-026
Identities = 30/46 (65%), Positives = 32/46 (69%)
Frame = +3 / -3
Query: 267 SVVVLSDQYXXXXXXXDPACDVFSWSFSSWLKFPFSLISWMWWCLQ 404
S V++ DPACDVFS SFSSWLKFPFSLIS MWWCLQ
Sbjct: 144 SSVIVLSD*YSSSSSSDPACDVFS*SFSSWLKFPFSLIS*MWWCLQ 7
Score = 57.9 bits (120), Expect(3) = 1e-026
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2 / -2
Query: 182 MTSIGKTEIEPRHRNT*CSRQMQEDSLFICGCA 280
++SIGK EIEP HRN *CS+QMQED LFIC A
Sbjct: 226 LSSIGKIEIEPCHRNI*CSKQMQED*LFICDSA 128
Score = 52.8 bits (109), Expect(3) = 4e-028
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -1 / +1
Query: 410 AVLQAPPHPADQGEGELQPA*E*PREDI 327
A+LQAPPH ADQ EG+LQPA*E* RED+
Sbjct: 1 ALLQAPPHSADQREGKLQPA*E*SREDV 84
Score = 33.6 bits (67), Expect(3) = 3e-021
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 307 PPVTQPVMSSRGHSQ 351
PPVTQPV SSR HSQ
Sbjct: 104 PPVTQPVTSSRDHSQ 60
Score = 33.1 bits (66), Expect(3) = 4e-028
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -3 / +3
Query: 345 MTTRRHHRLGHWR 307
M TRR HRLGHWR
Sbjct: 66 MITRRRHRLGHWR 104
Score = 25.8 bits (50), Expect(3) = 1e-026
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3 / -1
Query: 135 FTCRYKTTISLFSEHT 182
FT + KT ISLFSE T
Sbjct: 272 FTMQNKTIISLFSERT 225
Score = 24.9 bits (48), Expect(3) = 2e-038
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3 / +2
Query: 180 CVQRTMILLSCICM*T 133
CVQRTM L SC *T
Sbjct: 227 CVQRTMKLSSCSAS*T 274
Score = 24.9 bits (48), Expect(3) = 3e-021
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2 / -3
Query: 134 VYMQIQDNNIIVL*TH 181
VY QD+N IVL*TH
Sbjct: 273 VYDAEQDDNFIVL*TH 226
>gb|BE360326.1|BE360326 DG1_62_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 132 bits (283), Expect(2) = 4e-038
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / +3
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 138 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 317
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 318 YCKHHFSQLFKEKGSYNHL 374
Score = 47.3 bits (97), Expect(2) = 4e-038
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = -2 / +3
Query: 712 EGVLYCRPHFDQLFKRTGSLDKSFE 638
EGV YC+ HF+QLFK TGS +KSF+
Sbjct: 3 EGVPYCKAHFEQLFKETGSYNKSFQ 77
>gb|CF430008.1|CF430008 PH1_25_B05.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_B05_A002 5', mRNA sequence
Length = 723
Score = 132 bits (283), Expect(2) = 2e-037
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / -3
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 589 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 410
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 409 YCKHHFSQLFKEKGSYNHL 353
Score = 45.1 bits (92), Expect(2) = 2e-037
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = -2 / -3
Query: 709 GVLYCRPHFDQLFKRTGSLDKSFE 638
GV YC+ HF+QLFK TGS +KSF+
Sbjct: 721 GVPYCKAHFEQLFKETGSYNKSFQ 650
>gb|CW176126.1|CW176126 104_589_11158321_148_36583_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158321, DNA
sequence
Length = 498
Score = 89.0 bits (188), Expect(3) = 3e-037
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = -2 / -1
Query: 829 DKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLA 728
DKTVYLVDKLTADNRIYHKACFRCHHCKGTLK+A
Sbjct: 498 DKTVYLVDKLTADNRIYHKACFRCHHCKGTLKVA 397
Score = 78.5 bits (165), Expect(3) = 5e-028
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +3 / +2
Query: 726 LASLRVPLQWWQRKQALW*MRLSAVSLSTRYTVL 827
+A+LRVPLQWWQRKQALW*MRLSAVSLSTRYTVL
Sbjct: 395 VATLRVPLQWWQRKQALW*MRLSAVSLSTRYTVL 496
Score = 69.3 bits (145), Expect(3) = 3e-037
Identities = 32/36 (88%), Positives = 32/36 (88%)
Frame = -1 / -2
Query: 734 ARQLQLLRGSALLQASLRPAVQEDRELGQELRRNSQ 627
A QLQLLRGSALLQASLRPAVQEDRE GQELRR Q
Sbjct: 260 ACQLQLLRGSALLQASLRPAVQEDREFGQELRRYHQ 153
Score = 52.4 bits (108), Expect(3) = 5e-028
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +2 / +2
Query: 635 SFEALVQAPCPLEQLVEVRPAVEHS 709
+FEALVQ P PLEQLVEVRPAVEHS
Sbjct: 161 TFEALVQTPGPLEQLVEVRPAVEHS 235
Score = 39.6 bits (80), Expect(3) = 3e-037
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2 / -3
Query: 637 GTPKVVKPERNVGNE 593
GTPKVVKPERNVGNE
Sbjct: 76 GTPKVVKPERNVGNE 32
Score = 35.9 bits (72), Expect(3) = 5e-028
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +2 / +2
Query: 593 LIPNVSFWLDNLGSS 637
LIPNVSFWLDNL SS
Sbjct: 32 LIPNVSFWLDNLWSS 76
>gb|AW922579.1|AW922579 DG1_45_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 629
Score = 132 bits (283), Expect(2) = 2e-036
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / +2
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 128 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 307
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 308 YCKHHFSQLFKEKGSYNHL 364
Score = 41.8 bits (85), Expect(2) = 2e-036
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -2 / +2
Query: 700 YCRPHFDQLFKRTGSLDKSFE 638
YC+ HF+QLFK TGS +KSF+
Sbjct: 5 YCKAHFEQLFKETGSYNKSFQ 67
>gb|AW287022.2|AW287022 LG1_264_E07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 511
Score = 124 bits (266), Expect(2) = 5e-033
Identities = 44/75 (58%), Positives = 57/75 (76%)
Frame = -2 / +2
Query: 862 FQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHF 683
F GT KC C KTVY +D+L+ D +H++CF+C HCK TL L+NY+SFEGV YC+ HF
Sbjct: 149 FSGTQQKCKVCTKTVYPMDQLSTDGVAFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKAHF 328
Query: 682 DQLFKRTGSLDKSFE 638
+QLFK TGS +KSF+
Sbjct: 329 EQLFKETGSYNKSFQ 373
Score = 38.2 bits (77), Expect(2) = 5e-033
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2 / +2
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTER 509
+K + F+GT++KC C KT YP E+
Sbjct: 434 SKAARMFSGTQDKCATCGKTAYPLEK 511
>gb|BG241604.1|BG241604 RHIZ2_17_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 565
Score = 132 bits (283), Expect = 8e-030
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / +2
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 80 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 259
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 260 YCKHHFSQLFKEKGSYNHL 316
>gb|CF427234.1|CF427234 PH1_4_F06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_F06_A002 3', mRNA sequence
Length = 547
Score = 132 bits (283), Expect = 8e-030
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = -2 / +3
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 407
+K + F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG L
Sbjct: 51 SKAARMFSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGIL 230
Query: 406 YCKHHHIQLIKEKGNFSQL 350
YCKHH QL KEKG+++ L
Sbjct: 231 YCKHHFSQLFKEKGSYNHL 287
>gb|BF481871.1|BF481871 FM1_22_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 555
Score = 130 bits (278), Expect = 4e-029
Identities = 47/73 (64%), Positives = 55/73 (75%)
Frame = -2 / +2
Query: 568 FAGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHH 389
F+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG LYCKHH
Sbjct: 44 FSGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGILYCKHHF 223
Query: 388 IQLIKEKGNFSQL 350
QL KEKG+++ L
Sbjct: 224 SQLFKEKGSYNHL 262
>gb|CW357581.1|CW357581 fsbb001f024e23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024e23, DNA
sequence
Length = 687
Score = 128 bits (274), Expect = 1e-028
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = -2 / +1
Query: 877 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLA 728
AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLK+A
Sbjct: 427 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKVA 576
Score = 117 bits (251), Expect = 2e-025
Identities = 49/51 (96%), Positives = 51/51 (100%)
Frame = +3 / -2
Query: 726 LASLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 878
+A+LRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA
Sbjct: 578 VATLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 426
>gb|CW366490.1|CW366490 fsbb001f039i08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039i08, DNA
sequence
Length = 500
Score = 128 bits (274), Expect = 1e-028
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = -2 / -3
Query: 877 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLA 728
AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLK+A
Sbjct: 234 AMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKVA 85
Score = 117 bits (251), Expect = 2e-025
Identities = 49/51 (96%), Positives = 51/51 (100%)
Frame = +3 / +2
Query: 726 LASLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 878
+A+LRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA
Sbjct: 83 VATLRVPLQWWQRKQALW*MRLSAVSLSTRYTVLSQAVHLVVVPWKEVAMA 235
>gb|BF586546.1|BF586546 FM1_29_E09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 559
Score = 127 bits (272), Expect = 3e-028
Identities = 46/72 (63%), Positives = 54/72 (75%)
Frame = -2 / +3
Query: 565 AGTREKCVGCSKTVYPTERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHI 386
+GT++KC C KT YP E+VTV YHKSCFKC HGGC I+PSNY A EG LYCKHH
Sbjct: 33 SGTQDKCATCGKTAYPLEKVTVEEKAYHKSCFKCSHGGCAITPSNYAALEGILYCKHHFS 212
Query: 385 QLIKEKGNFSQL 350
QL KEKG+++ L
Sbjct: 213 QLFKEKGSYNHL 248
>gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
sequence
Length = 734
Score = 86.8 bits (183), Expect(2) = 9e-028
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = -2 / -1
Query: 901 EAGRETTAAMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL 731
E R T SF GT KCTACDKTV+ +D LTAD IYHK CF+C HCKG L +
Sbjct: 548 ECVRAATGVGTMSFTGTQDKCTACDKTVHFIDLLTADGVIYHKTCFKCSHCKGILSV 378
Score = 61.1 bits (127), Expect(2) = 9e-028
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = -2 / -1
Query: 751 CKGTLKLANYNSFEGVLYCRPHFDQLFKRTGSLDKSF 641
C G L++ +Y+S +GVLYC+ HF+QLFK TGS K F
Sbjct: 239 CVGRLQMCSYSSMDGVLYCKTHFEQLFKETGSFSKKF 129
>gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 642
Score = 86.8 bits (183), Expect(2) = 5e-027
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = -2 / +3
Query: 901 EAGRETTAAMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL 731
E R T SF GT KCTACDKTV+ +D LTAD IYHK CF+C HCKG L +
Sbjct: 225 ECVRAATGVGTMSFTGTQDKCTACDKTVHFIDLLTADGVIYHKTCFKCSHCKGILSV 395
Score = 58.3 bits (121), Expect(2) = 5e-027
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -2 / +3
Query: 751 CKGTLKLANYNSFEGVLYCRPHFDQLFKRTGSLDK 647
C G L++ +Y+S +GVLYC+ HF+QLFK TGS K
Sbjct: 534 CVGRLQMCSYSSMDGVLYCKTHFEQLFKETGSFSK 638
>gb|CF427262.1|CF427262 PH1_4_F06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_F06_A002 5', mRNA sequence
Length = 567
Score = 122 bits (261), Expect = 8e-027
Identities = 45/90 (50%), Positives = 59/90 (65%)
Frame = -2 / +3
Query: 862 FQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHF 683
F GT KC C KT Y +D+L+ D +H++CF+C HCK TL L+NY+SFEGV YC+ HF
Sbjct: 294 FSGTQQKCKVCTKTGYPMDQLSTDGVAFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKAHF 473
Query: 682 DQLFKRTGSLDKSFEGTPKVVKPERNVGNE 593
+QLFK TGS +KSF+ P + E
Sbjct: 474 EQLFKETGSYNKSFQSQSPAKIPPEKLAPE 563
>gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 671
Score = 79.9 bits (168), Expect(2) = 6e-023
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = -2 / -2
Query: 508 VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNFSQL 350
+T+ YHKSCFKC HGGC ++ S+Y A G LYCK H QL KEKG+++ L
Sbjct: 334 MTLEGESYHKSCFKCSHGGCILTTSSYAALNGILYCKIHFSQLFKEKGSYNHL 176
Score = 49.2 bits (101), Expect(2) = 6e-023
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = -2 / -3
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERV 506
+K+SSAF+GT++KC C KTVYP E+V
Sbjct: 534 SKLSSAFSGTQDKCAACQKTVYPLEKV 454
>gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 483
Score = 86.8 bits (183), Expect(2) = 2e-022
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = -2 / -1
Query: 901 EAGRETTAAMATSFQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL 731
E R T SF GT KCTACDKTV+ +D LTAD IYHK CF+C HCKG L +
Sbjct: 384 ECVRAATGVGTMSFTGTQDKCTACDKTVHFIDLLTADGVIYHKTCFKCSHCKGILSV 214
Score = 42.3 bits (86), Expect(2) = 2e-022
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -2 / -1
Query: 751 CKGTLKLANYNSFEGVLYCRPHFDQ 677
C G L++ +Y+S +GVLYC+ HF+Q
Sbjct: 75 CVGRLQMCSYSSMDGVLYCKTHFEQ 1
>gb|CW094129.1|CW094129 104_457_11000145_116_37477_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000145, DNA
sequence
Length = 690
Score = 67.5 bits (141), Expect(2) = 4e-022
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2 / -1
Query: 862 FQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL 731
F GT KC C KTVY +D+L+ D +H++CF+C HCK TL +
Sbjct: 597 FSGTQQKCKVCTKTVYPMDQLSTDGVAFHRSCFKCQHCKSTLSV 466
Score = 61.1 bits (127), Expect(2) = 4e-022
Identities = 22/38 (57%), Positives = 30/38 (78%)
Frame = -2 / -1
Query: 733 LANYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKVV 620
L+NY+SFEGV YC+ HF+QLFK TGS +KSF+ + +
Sbjct: 123 LSNYSSFEGVPYCKAHFEQLFKETGSYNKSFQSQSRTL 10
>gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 553
Score = 76.7 bits (161), Expect(2) = 2e-021
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = -2 / -3
Query: 511 RVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNFSQLE 347
++T+ YHKSCFKC HGGC ++ S+Y A G LYCK H QL EKG+++ ++
Sbjct: 167 QLTLEGEAYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMK 3
Score = 49.2 bits (101), Expect(2) = 2e-021
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = -2 / -3
Query: 586 TKVSSAFAGTREKCVGCSKTVYPTERV 506
+K+SSAF+GT++KC C KTVYP E+V
Sbjct: 404 SKLSSAFSGTQDKCAACQKTVYPLEKV 324
>gb|BF586623.1|BF586623 FM1_29_E09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 408
Score = 103 bits (219), Expect = 5e-021
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = -2 / +3
Query: 862 FQGTTTKCTACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHF 683
F GT KC C KTVY +D+L+ D +H++CF+C HCK TL L+NY+SFEGV YC+ HF
Sbjct: 222 FSGTQQKCKVCTKTVYPMDQLSTDGVAFHRSCFKCQHCKSTLSLSNYSSFEGVPYCKAHF 401
Query: 682 DQ 677
+Q
Sbjct: 402 EQ 407
>gb|CW357580.1|CW357580 fsbb001f024e23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f024e23, DNA
sequence
Length = 696
Score = 69.3 bits (145), Expect(3) = 7e-021
Identities = 32/36 (88%), Positives = 32/36 (88%)
Frame = -1 / -1
Query: 734 ARQLQLLRGSALLQASLRPAVQEDRELGQELRRNSQ 627
A QLQLLRGSALLQASLRPAVQEDRE GQELRR Q
Sbjct: 522 ACQLQLLRGSALLQASLRPAVQEDREFGQELRRYHQ 415
Score = 39.6 bits (80), Expect(3) = 7e-021
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2 / -2
Query: 637 GTPKVVKPERNVGNE 593
GTPKVVKPERNVGNE
Sbjct: 338 GTPKVVKPERNVGNE 294
Score = 34.5 bits (69), Expect(3) = 7e-021
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -2 / -3
Query: 763 RCHHCKGTLKLA 728
RCHHCKGTLK+A
Sbjct: 694 RCHHCKGTLKVA 659
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,128,804,384
Number of Sequences: 832831
Number of extensions: 16176024
Number of successful extensions: 106733
Number of sequences better than 1.0e-020: 34
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 30793002111
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)