TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131612.2.1
(620 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) So... 199 5e-051
gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-tr... 195 4e-049
gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stres... 194 8e-049
gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infecte... 190 1e-047
gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorgh... 160 2e-045
gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorgh... 148 5e-042
gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorgh... 160 2e-038
gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorgh... 160 2e-038
gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adap... 140 6e-036
gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infecte... 145 5e-034
gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient se... 144 1e-033
gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorg... 143 2e-033
gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorg... 143 2e-033
gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorg... 143 2e-033
gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Me... 143 2e-033
gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorg... 143 2e-033
gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infecte... 143 2e-033
gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stresse... 143 2e-033
gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves... 142 4e-033
gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorgh... 140 1e-032
gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorg... 138 1e-031
gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Me... 125 4e-030
gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated... 126 4e-028
gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorgh... 124 1e-027
gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infecte... 112 4e-027
gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sor... 122 5e-027
gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) So... 122 5e-027
gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-tr... 122 5e-027
gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-tr... 122 5e-027
gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient se... 122 5e-027
gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorgh... 114 8e-027
gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum m... 119 5e-026
gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorgh... 115 8e-025
gb|CW265210.1|CW265210 104_734_11231740_116_35260_010 Sorgh... 87 3e-022
gb|BG054083.1|BG054083 OV2_3_C07.g1_A002 Ovary 2 (OV2) Sorg... 89 4e-022
gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkal... 104 1e-021
gb|CW334498.1|CW334498 104_833_11482533_148_36071_095 Sorgh... 102 2e-021
>gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 423
Score = 199 bits (430), Expect(2) = 5e-051
Identities = 82/95 (86%), Positives = 88/95 (92%)
Frame = +3 / +1
Query: 18 LAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSE 197
LAFMP+GWGLLLIAQ +R I +GLWGS+KALARGYEI+MGLLLFTPIAFLAWFPFVSE
Sbjct: 1 LAFMPSGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSE 180
Query: 198 FQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
FQTRMLFNQAFSRGLQISRILGGHKKDR R+KE*
Sbjct: 181 FQTRMLFNQAFSRGLQISRILGGHKKDRAARNKE* 285
Score = 148 bits (317), Expect = 9e-035
Identities = 64/94 (68%), Positives = 68/94 (72%)
Frame = -2 / -2
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXX 122
+SL R SFLCPPRIREICRPLLKAWLNSILVWNS+TNGNQAR A+GVN
Sbjct: 284 HSLFRAALSFLCPPRIREICRPLLKAWLNSILVWNSETNGNQARNAIGVNSSKPMMIS*P 105
Query: 121 XXXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKA 20
AL DPHSPI I LI AIRSKPHP+GM A
Sbjct: 104 RASALTDPHSPICEIADLIVCAIRSKPHPLGMNA 3
Score = 108 bits (231), Expect = 7e-023
Identities = 47/94 (50%), Positives = 59/94 (62%)
Frame = +2 / +3
Query: 20 CLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLVPVRVRV 199
C+HA W+GFA D +Y+ A+G+ Q +CP L D +G + VH P LVPV V
Sbjct: 3 CVHAEWVGFASDSTNYEVSYFTYGAMGIGQSACPRL*DHHGLAAVHPDRIPSLVPVCFGV 182
Query: 200 PDQDAVQPGLQQRSADLPYPGRTQERPRDAEQGV 301
PD+DA+QPGLQ RSAD YP TQ+R EQGV
Sbjct: 183 PDKDAIQPGLQ*RSADFSYPRWTQKRQGCTEQGV 284
Score = 22.6 bits (43), Expect(2) = 5e-051
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = +2 / +1
Query: 425 CMYVCVC 445
C+YVCVC
Sbjct: 403 CVYVCVC 423
>gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 3', mRNA sequence
Length = 555
Score = 195 bits (421), Expect = 4e-049
Identities = 77/100 (77%), Positives = 90/100 (90%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I+VC LAF+PTGWG+LLIAQA +P+ + +GLWGS++ALAR YEI+MG+LLFTPI LAWF
Sbjct: 66 IYVCFLAFLPTGWGILLIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWF 245
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG KK+R RSK+*
Sbjct: 246 PFVSEFQTRMLFNQAFSRGLQISRILGGQKKERSARSKD* 365
Score = 107 bits (229), Expect = 1e-022
Identities = 53/97 (54%), Positives = 55/97 (56%)
Frame = -2 / -3
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSF PPRIREIC PLL A LNSI VWNSDT GN A +GV
Sbjct: 361 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 182
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
A DPH+P GL A AI S PHPVG AR T
Sbjct: 181 ARARTDPHNPTCRARGLQACAISSIPHPVGKNARKHT 71
>gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H05_A002 3', mRNA sequence
Length = 732
Score = 194 bits (419), Expect = 8e-049
Identities = 77/100 (77%), Positives = 89/100 (89%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVC LAF+PTGWG+LLIAQ +P+ + +GLWGS++ALAR YEI+MG+LLFTPI LAWF
Sbjct: 326 IFVCFLAFLPTGWGILLIAQPCKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWF 505
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG KK+R RSK+*
Sbjct: 506 PFVSEFQTRMLFNQAFSRGLQISRILGGQKKERSARSKD* 625
Score = 106 bits (226), Expect = 3e-022
Identities = 52/99 (52%), Positives = 55/99 (55%)
Frame = -2 / -1
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSF PPRIREIC PLL A LNSI VWNSDT GN A +GV
Sbjct: 621 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 442
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
A DPH+P GL AI S PHPVG AR T +
Sbjct: 441 ARARTDPHNPTCRARGLQGCAISSIPHPVGKNARKHTNI 325
>gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 511
Score = 190 bits (410), Expect = 1e-047
Identities = 75/97 (77%), Positives = 87/97 (89%)
Frame = +3 / +1
Query: 12 CILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFV 191
C LAF+PTGWG+LLIAQA +P+ + +GLWGS++ALAR YEI+MG+LLFTPI LAWFPFV
Sbjct: 1 CFLAFLPTGWGILLIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFV 180
Query: 192 SEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
SEFQTRMLFNQAFSRGLQISRILGG KK+R RSK+*
Sbjct: 181 SEFQTRMLFNQAFSRGLQISRILGGQKKERSARSKD* 291
Score = 105 bits (225), Expect = 5e-022
Identities = 52/94 (55%), Positives = 54/94 (57%)
Frame = -2 / -3
Query: 298 SLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXX 119
SLLR RSF PPRIREIC PLL A LNSI VWNSDT GN A +GV
Sbjct: 287 SLLRADRSFF*PPRIREICSPLLNA*LNSIRVWNSDTKGNHANIVIGVKRSTPIIIS*AR 108
Query: 118 XXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKAR 17
A DPH+P GL A AI S PHPVG AR
Sbjct: 107 ARARTDPHNPTCRARGLQACAISSIPHPVGKNAR 6
>gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892573, DNA
sequence
Length = 745
Score = 160 bits (344), Expect(2) = 2e-045
Identities = 65/86 (75%), Positives = 76/86 (88%)
Frame = +3 / +3
Query: 45 LLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 224
+L IAQA +P+ + +GLWGS++ALAR YEI+MG+LLFTPI LAWFPFVSEFQTRMLFNQ
Sbjct: 330 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 509
Query: 225 AFSRGLQISRILGGHKKDRGTRSKE* 302
AFSRGLQISRILGG KK+R RSK+*
Sbjct: 510 AFSRGLQISRILGGQKKERSARSKD* 587
Score = 43.7 bits (89), Expect(2) = 2e-045
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAI 68
IFVC LAF+PTGWG+LL+ ++
Sbjct: 182 IFVCFLAFLPTGWGILLVRHSL 247
>gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174363, DNA
sequence
Length = 703
Score = 148 bits (318), Expect(2) = 5e-042
Identities = 59/78 (75%), Positives = 70/78 (89%)
Frame = +3 / +1
Query: 45 LLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 224
+L IAQA +P+ + +GLWGS++ALAR YEI+MG+LLFTPI LAWFPFVSEFQTRMLFNQ
Sbjct: 412 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 591
Query: 225 AFSRGLQISRILGGHKKD 278
AFSRGLQISRILGG K++
Sbjct: 592 AFSRGLQISRILGGQKRN 645
Score = 43.7 bits (89), Expect(2) = 5e-042
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAI 68
IFVC LAF+PTGWG+LL+ ++
Sbjct: 264 IFVCFLAFLPTGWGILLVRHSL 329
>gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140330, DNA
sequence
Length = 721
Score = 160 bits (344), Expect = 2e-038
Identities = 65/86 (75%), Positives = 76/86 (88%)
Frame = +3 / +1
Query: 45 LLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 224
+L IAQA +P+ + +GLWGS++ALAR YEI+MG+LLFTPI LAWFPFVSEFQTRMLFNQ
Sbjct: 121 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 300
Query: 225 AFSRGLQISRILGGHKKDRGTRSKE* 302
AFSRGLQISRILGG KK+R RSK+*
Sbjct: 301 AFSRGLQISRILGGQKKERSARSKD* 378
>gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470397, DNA
sequence
Length = 730
Score = 160 bits (344), Expect = 2e-038
Identities = 65/86 (75%), Positives = 76/86 (88%)
Frame = +3 / +1
Query: 45 LLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 224
+L IAQA +P+ + +GLWGS++ALAR YEI+MG+LLFTPI LAWFPFVSEFQTRMLFNQ
Sbjct: 61 ILQIAQACKPLARHVGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQ 240
Query: 225 AFSRGLQISRILGGHKKDRGTRSKE* 302
AFSRGLQISRILGG KK+R RSK+*
Sbjct: 241 AFSRGLQISRILGGQKKERSARSKD* 318
>gb|BZ334804.1|BZ334804 hx93f03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx93f03 5', DNA sequence
Length = 633
Score = 140 bits (301), Expect(2) = 6e-036
Identities = 56/74 (75%), Positives = 66/74 (89%)
Frame = +3 / -3
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
I+QA +PVI+ GLWGS+KAL+RGYE LMG+++F P+A LAWFPFVSEFQTR+LFNQAFS
Sbjct: 262 ISQASKPVIKACGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQTRLLFNQAFS 83
Query: 234 RGLQISRILGGHKK 275
RGLQISRIL G KK
Sbjct: 82 RGLQISRILAGGKK 41
Score = 32.7 bits (65), Expect(2) = 6e-036
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPV 77
IF LAF PTGW +L + + P+
Sbjct: 525 IFASFLAFAPTGWAILQVPPPVSPL 451
>gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 437
Score = 145 bits (312), Expect = 5e-034
Identities = 59/72 (81%), Positives = 66/72 (91%)
Frame = +3 / +1
Query: 87 IGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 266
+GLWGS++ALAR YEI+MG+LLFTPI LAWFPFVSEFQTRMLFNQAFSRGLQISRILGG
Sbjct: 7 VGLWGSVRALARAYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 186
Query: 267 HKKDRGTRSKE* 302
KK+R RSK+*
Sbjct: 187 QKKERFARSKD* 222
>gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_A03_A002 3', mRNA sequence
Length = 417
Score = 144 bits (309), Expect = 1e-033
Identities = 59/72 (81%), Positives = 65/72 (90%)
Frame = +3 / +2
Query: 87 IGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 266
+GLWGS+ ALAR YEI+MG+LLFTPI LAWFPFVSEFQTRMLFNQAFSRGLQISRILGG
Sbjct: 11 VGLWGSVGALARPYEIIMGVLLFTPITILAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 190
Query: 267 HKKDRGTRSKE* 302
KK+R RSK+*
Sbjct: 191 QKKERSARSKD* 226
>gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 352
Score = 143 bits (307), Expect = 2e-033
Identities = 54/94 (57%), Positives = 75/94 (79%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG++ IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WF
Sbjct: 40 VFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWF 219
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ + G
Sbjct: 220 PFISTFQTRLLFNQAFSRGLEISLILAGNNPNAG 321
>gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 651
Score = 143 bits (307), Expect = 2e-033
Identities = 54/94 (57%), Positives = 75/94 (79%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG++ IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WF
Sbjct: 143 VFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWF 322
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ + G
Sbjct: 323 PFISTFQTRLLFNQAFSRGLEISLILAGNNPNAG 424
>gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 650
Score = 143 bits (307), Expect = 2e-033
Identities = 54/94 (57%), Positives = 75/94 (79%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG++ IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WF
Sbjct: 131 VFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWF 310
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ + G
Sbjct: 311 PFISTFQTRLLFNQAFSRGLEISLILAGNNPNAG 412
>gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 601
Score = 143 bits (307), Expect = 2e-033
Identities = 54/94 (57%), Positives = 75/94 (79%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG++ IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WF
Sbjct: 73 VFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWF 252
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ + G
Sbjct: 253 PFISTFQTRLLFNQAFSRGLEISLILAGNNPNAG 354
>gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 590
Score = 143 bits (307), Expect = 2e-033
Identities = 54/94 (57%), Positives = 75/94 (79%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG++ IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WF
Sbjct: 77 VFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWF 256
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ + G
Sbjct: 257 PFISTFQTRLLFNQAFSRGLEISLILAGNNPNAG 358
>gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 612
Score = 143 bits (307), Expect = 2e-033
Identities = 54/94 (57%), Positives = 75/94 (79%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG++ IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WF
Sbjct: 75 VFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWF 254
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ + G
Sbjct: 255 PFISTFQTRLLFNQAFSRGLEISLILAGNNPNAG 356
>gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_20_E12_A010 3', mRNA sequence
Length = 634
Score = 143 bits (307), Expect = 2e-033
Identities = 54/94 (57%), Positives = 75/94 (79%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG++ IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WF
Sbjct: 80 VFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWF 259
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ + G
Sbjct: 260 PFISTFQTRLLFNQAFSRGLEISLILAGNNPNAG 361
>gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 3', mRNA sequence
Length = 735
Score = 142 bits (305), Expect = 4e-033
Identities = 54/94 (57%), Positives = 74/94 (78%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG++ IA A PV++K+GLW +++ALAR Y+ G+++F PIA +WF
Sbjct: 224 VFASILAFVPTGWGIISIAMAWNPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWF 403
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
PF+S FQTR+LFNQAFSRGL+IS IL G+ + G
Sbjct: 404 PFISTFQTRLLFNQAFSRGLEISLILAGNNPNAG 505
>gb|CW225022.1|CW225022 104_662_11204129_116_37199_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204129, DNA
sequence
Length = 682
Score = 140 bits (301), Expect = 1e-032
Identities = 56/74 (75%), Positives = 66/74 (89%)
Frame = +3 / -2
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
I+QA +PVI+ GLWGS+KAL+RGYE LMG+++F P+A LAWFPFVSEFQTR+LFNQAFS
Sbjct: 558 ISQASKPVIKACGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQTRLLFNQAFS 379
Query: 234 RGLQISRILGGHKK 275
RGLQISRIL G KK
Sbjct: 378 RGLQISRILAGGKK 337
>gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 508
Score = 138 bits (295), Expect = 1e-031
Identities = 52/89 (58%), Positives = 72/89 (80%)
Frame = +3 / +1
Query: 18 LAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSE 197
LAF+PTGWG++ IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WFPF+S
Sbjct: 1 LAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFIST 180
Query: 198 FQTRMLFNQAFSRGLQISRILGGHKKDRG 284
FQTR+LFNQAFSRGL+IS IL G+ + G
Sbjct: 181 FQTRLLFNQAFSRGLEISLILAGNNPNAG 267
>gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 397
Score = 125 bits (267), Expect(2) = 4e-030
Identities = 53/57 (92%), Positives = 55/57 (96%)
Frame = +3 / +1
Query: 132 ILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
ILMGLLLFTPIAFLAWFP VSEFQTRMLFNQAFSRGLQISRILGG KKDRG+R+KE*
Sbjct: 1 ILMGLLLFTPIAFLAWFPLVSEFQTRMLFNQAFSRGLQISRILGGRKKDRGSRNKE* 171
Score = 118 bits (253), Expect(2) = 6e-028
Identities = 47/56 (83%), Positives = 49/56 (87%)
Frame = +2 / +3
Query: 137 NGASPVHAHCFPCLVPVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQGVV 304
+G SPVHAHC PCLVPV VR+PDQDAVQPGLQQRSADLPYP R QERPR EQGVV
Sbjct: 6 DGTSPVHAHCLPCLVPVGVRIPDQDAVQPGLQQRSADLPYPRRPQERPRIPEQGVV 173
Score = 115 bits (246), Expect(2) = 2e-028
Identities = 47/50 (94%), Positives = 47/50 (94%)
Frame = -2 / -3
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
YSL R PRSFL PPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN
Sbjct: 170 YSLFRDPRSFLRPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 21
Score = 107 bits (228), Expect(2) = 3e-024
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = -1 / -2
Query: 290 PRPSVFLVSSQDTGDLQTSAEGLVEQHPGLELGHEREPGKESNGREQEKPH*D 132
P SVFL +S+DTGDLQTSAEGLVEQHPGLE GH+REPGKE NGREQEK H D
Sbjct: 159 PGSSVFLAASEDTGDLQTSAEGLVEQHPGLEFGHQREPGKEGNGREQEKSHQD 1
Score = 31.8 bits (63), Expect(2) = 2e-028
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3 / -1
Query: 456 SLNLHTHTYIHTTGARCDTH 397
+L++H T +HTT RC+TH
Sbjct: 370 NLSMHRATDLHTTSTRCNTH 311
Score = 28.1 bits (55), Expect(2) = 4e-030
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1 / +2
Query: 397 VCVAPSTSSMYVC 435
+CVAPSTSSM +C
Sbjct: 311 MCVAPSTSSM*IC 349
Score = 27.2 bits (53), Expect(2) = 6e-028
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2 / +3
Query: 395 MCVSHLAPVVCMYVCVCRFR 454
+CV HL VVC V +C R
Sbjct: 309 VCVLHLVLVVCKSVALCMLR 368
Score = 26.3 bits (51), Expect(2) = 3e-024
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1 / -2
Query: 428 YILLVLGATHTYIH 387
YILLVLGATH ++
Sbjct: 342 YILLVLGATHIRLY 301
>gb|CD428205.1|CD428205 ETH1_28_F10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F10_A002 3', mRNA sequence
Length = 673
Score = 126 bits (269), Expect = 4e-028
Identities = 51/86 (59%), Positives = 64/86 (74%)
Frame = +3 / +1
Query: 15 ILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVS 194
+LAF+PTGWGL+ IAQ IRP I+ +W SI ++AR YEIL+G + P+A L+W P
Sbjct: 1 LLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGAFIMAPVALLSWLPGFQ 180
Query: 195 EFQTRMLFNQAFSRGLQISRILGGHK 272
E QTR+LFN+ FSRGLQISRIL G K
Sbjct: 181 EMQTRVLFNEGFSRGLQISRILTGKK 258
>gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154083, DNA
sequence
Length = 690
Score = 124 bits (265), Expect = 1e-027
Identities = 52/75 (69%), Positives = 59/75 (78%)
Frame = +3 / -2
Query: 48 LLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQA 227
L I QA P+I++ LW SI L R YE +MGL+LF PI FL+WFPFVSEFQTR+LFNQA
Sbjct: 503 LQIGQACSPLIRRTMLWDSIMELGRSYENIMGLILFLPIGFLSWFPFVSEFQTRLLFNQA 324
Query: 228 FSRGLQISRILGGHK 272
FSRGLQISRIL G K
Sbjct: 323 FSRGLQISRILAGQK 279
>gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 588
Score = 112 bits (240), Expect(2) = 4e-027
Identities = 40/74 (54%), Positives = 59/74 (79%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG++ IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WF
Sbjct: 320 VFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWF 499
Query: 183 PFVSEFQTRMLFNQ 224
PF+S FQTR+LF +
Sbjct: 500 PFISTFQTRLLFTR 541
Score = 29.5 bits (58), Expect(2) = 4e-027
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3 / +1
Query: 219 NQAFSRGLQISRILGGH 269
+QAFSRGL+IS IL G+
Sbjct: 535 HQAFSRGLEISLILAGN 585
>gb|BF656703.1|BF656703 OV2_19_G06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 544
Score = 122 bits (261), Expect = 5e-027
Identities = 48/95 (50%), Positives = 68/95 (71%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L +A + V++ + LW S++ +AR Y+ MG ++F PI F +WF
Sbjct: 41 LFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWF 220
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
PFVS FQ+R LFNQAFSRGL+IS IL G+K ++ T
Sbjct: 221 PFVSTFQSRFLFNQAFSRGLEISLILAGNKANQQT 325
>gb|BG355877.1|BG355877 EM1_17_G07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 122 bits (261), Expect = 5e-027
Identities = 48/95 (50%), Positives = 68/95 (71%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L +A + V++ + LW S++ +AR Y+ MG ++F PI F +WF
Sbjct: 181 LFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWF 360
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
PFVS FQ+R LFNQAFSRGL+IS IL G+K ++ T
Sbjct: 361 PFVSTFQSRFLFNQAFSRGLEISLILAGNKANQQT 465
>gb|CD426513.1|CD426513 SA1_21_D06.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 3', mRNA sequence
Length = 637
Score = 122 bits (261), Expect = 5e-027
Identities = 48/95 (50%), Positives = 68/95 (71%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L +A + V++ + LW S++ +AR Y+ MG ++F PI F +WF
Sbjct: 159 LFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWF 338
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
PFVS FQ+R LFNQAFSRGL+IS IL G+K ++ T
Sbjct: 339 PFVSTFQSRFLFNQAFSRGLEISLILAGNKANQQT 443
>gb|CD426607.1|CD426607 SA1_21_D06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D06_A002 5', mRNA sequence
Length = 612
Score = 122 bits (261), Expect = 5e-027
Identities = 48/95 (50%), Positives = 68/95 (71%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L +A + V++ + LW S++ +AR Y+ MG ++F PI F +WF
Sbjct: 158 LFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWF 337
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
PFVS FQ+R LFNQAFSRGL+IS IL G+K ++ T
Sbjct: 338 PFVSTFQSRFLFNQAFSRGLEISLILAGNKANQQT 442
>gb|CF074085.1|CF074085 FE1_21_G07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 3', mRNA sequence
Length = 587
Score = 122 bits (261), Expect = 5e-027
Identities = 48/95 (50%), Positives = 68/95 (71%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L +A + V++ + LW S++ +AR Y+ MG ++F PI F +WF
Sbjct: 142 LFASALAFIATGWCILCLAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWF 321
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
PFVS FQ+R LFNQAFSRGL+IS IL G+K ++ T
Sbjct: 322 PFVSTFQSRFLFNQAFSRGLEISLILAGNKANQQT 426
>gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211451, DNA
sequence
Length = 580
Score = 114 bits (244), Expect(2) = 2e-025
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = -2 / -2
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMG 158
YSL RVPRSFL PPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMG
Sbjct: 144 YSLFRVPRSFLWPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMG 1
Score = 114 bits (243), Expect(3) = 8e-027
Identities = 47/48 (97%), Positives = 48/48 (100%)
Frame = +3 / +2
Query: 159 PIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTR+KE*
Sbjct: 2 PIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE* 145
Score = 112 bits (239), Expect = 5e-024
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = +2 / +1
Query: 158 AHCFPCLVPVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQGVV 304
AHC PCLVPVRVR+PDQDAVQPGLQQRSADLPYP R QERPRD EQGVV
Sbjct: 1 AHCLPCLVPVRVRIPDQDAVQPGLQQRSADLPYPRRPQERPRDPEQGVV 147
Score = 24.9 bits (48), Expect(3) = 8e-027
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 526 LLVQWPVSDI 555
L+VQWPVSD+
Sbjct: 391 LVVQWPVSDL 420
Score = 23.5 bits (45), Expect(2) = 2e-025
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -3 / -2
Query: 552 VRYWPLH 532
+RYWPLH
Sbjct: 417 IRYWPLH 397
Score = 21.7 bits (41), Expect(3) = 8e-027
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / +2
Query: 400 CVAPSTSS 423
CVAPSTSS
Sbjct: 290 CVAPSTSS 313
>gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512756, DNA
sequence
Length = 421
Score = 119 bits (254), Expect = 5e-026
Identities = 49/70 (70%), Positives = 56/70 (80%)
Frame = +3 / +3
Query: 63 AIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGL 242
A P+I++ LW SI L R YE +MGL+LF PI FL+WFPFVSEFQTR+LFNQAFSRGL
Sbjct: 3 ACSPLIRRTMLWDSIMELGRSYENIMGLILFLPIGFLSWFPFVSEFQTRLLFNQAFSRGL 182
Query: 243 QISRILGGHK 272
QISRIL G K
Sbjct: 183 QISRILAGQK 212
>gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463402, DNA
sequence
Length = 563
Score = 115 bits (245), Expect = 8e-025
Identities = 45/79 (56%), Positives = 62/79 (78%)
Frame = +3 / -3
Query: 48 LLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQA 227
L IA A +PV++K+GLW +++ALAR Y+ G+++F PIA +WFPF+S FQTR+LFNQA
Sbjct: 339 LQIAMAWKPVVKKLGLWKTVRALARLYDAGTGMIIFIPIAICSWFPFISTFQTRLLFNQA 160
Query: 228 FSRGLQISRILGGHKKDRG 284
FSRGL+IS IL G+ + G
Sbjct: 159 FSRGLEISLILAGNNPNAG 103
>gb|CW265210.1|CW265210 104_734_11231740_116_35260_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231740, DNA
sequence
Length = 651
Score = 86.8 bits (183), Expect(2) = 3e-022
Identities = 38/79 (48%), Positives = 49/79 (62%)
Frame = +3 / -1
Query: 45 LLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQ 224
+L I Q +RP I+ +W I+ +A Y+ MG LLF PIA LAW P +S QTR+LFN+
Sbjct: 354 VLQIVQVLRPKIEYYAIWEPIQVIAHAYDYGMGSLLFFPIAVLAWMPVISAIQTRVLFNR 175
Query: 225 AFSRGLQISRILGGHKKDR 281
AFSR LQI + K R
Sbjct: 174 AFSRQLQIQPFIDVGKTKR 118
Score = 39.1 bits (79), Expect(2) = 3e-022
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIA 59
+ +C LAF+PTGWGLLL++
Sbjct: 483 LIICCLAFIPTGWGLLLVS 427
>gb|BG054083.1|BG054083 OV2_3_C07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 567
Score = 88.6 bits (187), Expect(2) = 4e-022
Identities = 35/60 (58%), Positives = 46/60 (76%)
Frame = +3 / +3
Query: 108 KALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
+ +AR Y+ MG ++F PI F +WFPFVS FQ+R LFNQAFSRGL+IS IL G+K ++ T
Sbjct: 222 REIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRFLFNQAFSRGLEISLILAGNKANQQT 401
Score = 36.8 bits (74), Expect(2) = 4e-022
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSI 107
+F LAF+ TGW +L +A + V++ + LW S+
Sbjct: 116 LFASALAFIATGWCILCLAVTWKKVVKTLRLWDSV 220
>gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G03_A002 5', mRNA sequence
Length = 809
Score = 104 bits (222), Expect = 1e-021
Identities = 40/73 (54%), Positives = 51/73 (69%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ +C LAF+PTGWGLLLI Q +RP I+ +W I+ +A Y+ MG LLF PIA LAW
Sbjct: 591 LIICCLAFIPTGWGLLLIVQVLRPKIEYYAIWEPIQVIAHAYDYGMGSLLFFPIAVLAWM 770
Query: 183 PFVSEFQTRMLFN 221
P +S QTR+LFN
Sbjct: 771 PVISAIQTRVLFN 809
>gb|CW334498.1|CW334498 104_833_11482533_148_36071_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482533, DNA
sequence
Length = 565
Score = 102 bits (217), Expect(2) = 2e-021
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +3 / +1
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
+A + V++ + LW S++ +AR Y+ MG ++F PI F +WFPFVS FQ+R LFNQAFS
Sbjct: 193 LAVTWKKVVKTLRLWDSVREIARMYDAGMGAIIFVPIVFFSWFPFVSTFQSRFLFNQAFS 372
Query: 234 RGLQISRILGGHKKDRGT 287
RGL+IS IL G+K ++ T
Sbjct: 373 RGLEISLILAGNKANQQT 426
Score = 22.1 bits (42), Expect(2) = 2e-021
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3 / +1
Query: 18 LAFMPTGWGLLLIA 59
LAF+ TGW +L ++
Sbjct: 4 LAFIATGWCILCVS 45
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 794,720,302
Number of Sequences: 832831
Number of extensions: 12282427
Number of successful extensions: 126378
Number of sequences better than 1.0e-020: 38
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18305916489
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)