TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE596069.1|BE596069 PI1_51_C11.g1_A002 Pathogen induced ... 269 7e-085
gb|BF421288.1|BF421288 FM1_7_H02.g1_A003 Floral-Induced Mer... 259 4e-079
gb|BE596241.1|BE596241 PI1_51_C11.b1_A002 Pathogen induced ... 269 1e-075
gb|BG048656.1|BG048656 OV1_21_D05.b1_A002 Ovary 1 (OV1) Sor... 230 2e-059
gb|BG048961.1|BG048961 OV1_21_D05.g1_A002 Ovary 1 (OV1) Sor... 230 2e-059
gb|CD227978.1|CD227978 CCC1_5_F05.b1_A007 Callus culture/ce... 230 2e-059
gb|CD228087.1|CD228087 CCC1_5_F05.g1_A007 Callus culture/ce... 230 2e-059
gb|CD229764.1|CD229764 CCC1_19_H12.g1_A007 Callus culture/c... 230 2e-059
gb|CN148416.1|CN148416 WOUND1_56_H01.b1_A002 Wounded leaves... 230 2e-059
gb|CN148481.1|CN148481 WOUND1_56_H01.g1_A002 Wounded leaves... 230 2e-059
gb|BF421370.1|BF421370 FM1_7_H02.b1_A003 Floral-Induced Mer... 216 3e-057
gb|CW022584.1|CW022584 104_162_10431932_5_30000 Sorghum met... 95 2e-056
gb|CW083471.1|CW083471 104_425_10944264_114_32351_084 Sorgh... 104 7e-047
gb|CW083472.1|CW083472 104_425_10944264_114_32387_084 Sorgh... 104 7e-047
gb|CW246897.1|CW246897 104_707_11221527_148_35088_052 Sorgh... 96 2e-046
gb|CW246898.1|CW246898 104_707_11221527_148_37606_052 Sorgh... 98 3e-042
gb|CW102865.1|CW102865 104_471_11011572_116_34429_044 Sorgh... 91 2e-038
gb|CW161652.1|CW161652 104_568_11150526_148_36435_021 Sorgh... 80 5e-023
>gb|BE596069.1|BE596069 PI1_51_C11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 618
Score = 269 bits (582), Expect(4) = 7e-085
Identities = 113/125 (90%), Positives = 117/125 (93%)
Frame = +1 / +1
Query: 145 ATGAEKEGGGSMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA 324
A ++ GG +MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA
Sbjct: 97 AGAEKEGGG*AMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA 276
Query: 325 FDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
FDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP * PN
Sbjct: 277 FDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN*LPN 456
Query: 505 QSPCS 519
Q PCS
Sbjct: 457 QPPCS 471
Score = 221 bits (477), Expect(5) = 1e-075
Identities = 94/100 (94%), Positives = 95/100 (95%)
Frame = -3 / -2
Query: 518 LQGDWLGDHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTML 339
LQG WLG+ FGFL TMMTESPLRNILLMNLSLFTGRAFFLPLPVLG SVHISRTFSSTML
Sbjct: 470 LQGGWLGNQFGFLRTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTML 291
Query: 338 QWRSKARTRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
QWRSKARTRPSSFLLLRQLM TWVLFLTLIIRTDRGPVLN
Sbjct: 290 QWRSKARTRPSSFLLLRQLMSTWVLFLTLIIRTDRGPVLN 171
Score = 204 bits (439), Expect(4) = 2e-064
Identities = 86/110 (78%), Positives = 89/110 (80%)
Frame = +3 / +3
Query: 189 ESGWKERGGGI*HRPSVSPNDEC*EXXXXXXXXXXXXEAAWPCSCF*SPL*HGARERA*D 368
ESGWKERGGGI*HRPSVSPNDEC*E E WP S F*SPL*HGARERA D
Sbjct: 141 ESGWKERGGGI*HRPSVSPNDEC*EQHPGAHQLPQQQETTWPGSRF*SPL*HGARERAGD 320
Query: 369 VDRDPQDWQGQKEGSACEQG*IHQ*DVPQGRLGHHSAEEPEVIAQPVTLQ 518
VDR PQDWQGQKEGSACEQG*IHQ DVPQGRLGHH +EEP++IAQP TLQ
Sbjct: 321 VDRGPQDWQGQKEGSACEQG*IHQQDVPQGRLGHHRSEEPKLIAQPATLQ 470
Score = 168 bits (362), Expect(3) = 1e-047
Identities = 83/125 (66%), Positives = 88/125 (70%)
Frame = -2 / -1
Query: 519 AAR*LVGRSLRVPQHYDDRVAPEEHLTDESILVHRQSLLFALASLGDLCPXXXXXXXXXX 340
AAR LVG+S+ VPQ+ DDRVAPEEHL DESILVHRQSLLFALASLGDLCP
Sbjct: 471 AARWLVGQSVWVPQNDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHV 292
Query: 339 XVAIKSTNTAKQLLVVAAIDEDLGVVLNTHH*D*QRACAKXXXXXXXXXXXIRHRASALL 160
VAIKS N AK LVVAAIDE LGVVLNTHH*D*QRACAK IRHR ++ L
Sbjct: 291 TVAIKSANPAK*FLVVAAIDEHLGVVLNTHH*D*QRACAKFLLLFLSSLILIRHRLASAL 112
Query: 159 FRAGG 145
G
Sbjct: 111 LLRAG 97
Score = 158 bits (339), Expect(3) = 2e-049
Identities = 75/102 (73%), Positives = 79/102 (77%)
Frame = +2 / +2
Query: 218 NLAQALCQS***VLRTTPRSSSIAATTRSCLAVFVLLIATVTWCSRTCVRCGQRSPXXXX 397
NLAQALCQS***VLRTTPR SSIAATTR+ LA F LLIATVTWCSRTC RCGQRSP
Sbjct: 170 NLAQALCQS***VLRTTPRCSSIAATTRNYLAGFALLIATVTWCSRTCGRCGQRSPRLAR 349
Query: 398 XXXXXXXXXXIDSSVRCSSGATRSS*C*GTRSDRPTSHLAAV 523
IDSS RCSSGATRSS *GT++D PTSHLAA+
Sbjct: 350 AKRRLCL*TRIDSSARCSSGATRSSSF*GTQTDCPTSHLAAM 475
Score = 144 bits (310), Expect(5) = 8e-060
Identities = 61/73 (83%), Positives = 62/73 (84%)
Frame = -1 / -3
Query: 517 CKVTGWAITSGSSAL**PSRP*GTSY**IYPCSQAEPSFCPCQSWGSLSTSHARSRAPCY 338
CKV GWAI+ GSS **PSRP*GTS **IYPCSQAEPSFCPCQSWG LSTS ARSRAPCY
Sbjct: 469 CKVAGWAISLGSSER**PSRP*GTSC**IYPCSQAEPSFCPCQSWGPLSTSPARSRAPCY 290
Query: 337 SGDQKHEHGQAAS 299
SGDQK E GQ S
Sbjct: 289 SGDQKREPGQVVS 251
Score = 58.8 bits (122), Expect(5) = 8e-060
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -1 / -3
Query: 262 S*HSSLGLTEGLC*IPPPLSFQPD 191
S*HSSLGLTEGLC*IPPPLSFQPD
Sbjct: 214 S*HSSLGLTEGLC*IPPPLSFQPD 143
Score = 49.2 bits (101), Expect(4) = 7e-085
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +1 / +3
Query: 565 KNCSLCVSWRISWLS*TDVHVTW 633
+NCSLC+ WRI+WL *TDVHVT+
Sbjct: 513 ENCSLCMFWRINWLP*TDVHVTF 581
Score = 49.2 bits (101), Expect(5) = 1e-075
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -2 / -2
Query: 627 HMNVSSR*PANPPRHT*ATVFSTE 556
HMNVSSR*P NPP+HT*ATVF+ +
Sbjct: 575 HMNVSSR*PVNPPKHT*ATVFNRD 504
Score = 48.3 bits (99), Expect(4) = 2e-064
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +2 / +1
Query: 557 SVEKTVAYVCLGGLAGYLELTFM* 628
S+ KTVAYVC GGL GYLELTFM*
Sbjct: 505 SLLKTVAYVCFGGLTGYLELTFM* 576
Score = 46.4 bits (95), Expect(5) = 8e-060
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -1 / -1
Query: 628 SHERQFKITS*SAKTHISYSFFNR 557
SHERQFK+TS*S+KT+ISYSF R
Sbjct: 576 SHERQFKVTS*SSKTYISYSFQQR 505
Score = 39.6 bits (80), Expect(3) = 2e-049
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1 / +1
Query: 133 PERLATGAEKEGGGSMADENQAGKKEEEE 219
PERLA GAEKEGGG + K+EEE
Sbjct: 82 PERLAAGAEKEGGG*AMADENQAGKKEEE 168
Score = 38.2 bits (77), Expect(3) = 2e-049
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3 / +2
Query: 528 PFSGFTESVPLLKKL*LMCVLAD*LVILN*RSCDM 632
PF S L KL*LM VL D*LV LN*RSCD+
Sbjct: 476 PFLWVHGSQCLC*KL*LMYVLED*LVTLN*RSCDL 580
Score = 38.2 bits (77), Expect(3) = 1e-047
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = -3 / -3
Query: 629 VT*TSVQDNQLIRQDTHKLQF 567
VT*TSVQ NQLI Q+ HKLQF
Sbjct: 577 VT*TSVQGNQLILQNIHKLQF 515
Score = 30.9 bits (61), Expect(5) = 1e-075
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / -2
Query: 130 SGWCWCAP 107
SGWCWCAP
Sbjct: 86 SGWCWCAP 63
Score = 29.9 bits (59), Expect(5) = 1e-075
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -2 / -1
Query: 174 ASALLFRAGGESLR 133
ASALL RAGGESLR
Sbjct: 123 ASALLLRAGGESLR 82
Score = 29.0 bits (57), Expect(5) = 1e-075
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3 / -2
Query: 566 FQQRHGFREPRERA*LLQG 510
F + GFREPRERA*L G
Sbjct: 515 FNRDIGFREPRERA*LQGG 459
Score = 28.6 bits (56), Expect(5) = 8e-060
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1 / -2
Query: 124 WCWCAPRGENLGIF 83
WC PRG NLGIF
Sbjct: 74 WCAPTPRGGNLGIF 33
Score = 28.1 bits (55), Expect(4) = 7e-085
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 518 AVMPFLWVHG 547
A MPFLWVHG
Sbjct: 467 AAMPFLWVHG 496
Score = 28.1 bits (55), Expect(5) = 8e-060
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / -3
Query: 547 SVNPEKGHNC 518
SVNPEKGH+C
Sbjct: 496 SVNPEKGHSC 467
Score = 26.7 bits (52), Expect(4) = 2e-064
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 511 PCSSYALSLGSRNP 552
P SYALSLGSR P
Sbjct: 460 PPCSYALSLGSRKP 501
Score = 26.7 bits (52), Expect(4) = 7e-085
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 105 LGAHQHHPE 131
+GAHQHHPE
Sbjct: 61 VGAHQHHPE 87
Score = 25.4 bits (49), Expect(4) = 2e-064
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 78 RPKIPRFSPLGAHQH 122
+ KIPRF PLG H
Sbjct: 28 KKKIPRFPPLGVGAH 72
Score = 23.1 bits (44), Expect(3) = 1e-047
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -1
Query: 549 IP*TQRKGITA 517
+P*TQRKGI A
Sbjct: 498 LP*TQRKGIAA 466
>gb|BF421288.1|BF421288 FM1_7_H02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 457
Score = 259 bits (560), Expect(3) = 4e-079
Identities = 107/111 (96%), Positives = 109/111 (98%)
Frame = +1 / +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE
Sbjct: 1 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 180
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPCS 519
MWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NP *SPNQ PCS
Sbjct: 181 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPN*SPNQPPCS 333
Score = 224 bits (483), Expect(3) = 4e-068
Identities = 95/100 (95%), Positives = 95/100 (95%)
Frame = -3 / -3
Query: 518 LQGDWLGDHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTML 339
LQG WLGD FGF STMMTESPLRNILLMNLSLFTGRAFFLPLPVLG SVHISRTFSSTML
Sbjct: 332 LQGGWLGDQFGFFSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTML 153
Query: 338 QWRSKARTRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
QWRSKARTRPSSFLLLRQLM TWVLFLTLIIRTDRGPVLN
Sbjct: 152 QWRSKARTRPSSFLLLRQLMSTWVLFLTLIIRTDRGPVLN 33
Score = 206 bits (444), Expect(3) = 9e-063
Identities = 87/110 (79%), Positives = 89/110 (80%)
Frame = +3 / +3
Query: 189 ESGWKERGGGI*HRPSVSPNDEC*EXXXXXXXXXXXXEAAWPCSCF*SPL*HGARERA*D 368
ESGWKERGGGI*HRP VSPNDEC*E EA WP SCF*SPL*HGARERA D
Sbjct: 3 ESGWKERGGGI*HRPPVSPNDEC*EQHPGAHQLPQQQEATWPGSCF*SPL*HGARERAGD 182
Query: 369 VDRDPQDWQGQKEGSACEQG*IHQ*DVPQGRLGHHSAEEPEVIAQPVTLQ 518
VDR PQDWQGQKEGSACEQG*IHQ DVPQG LGHH AEEP++IAQP TLQ
Sbjct: 183 VDRGPQDWQGQKEGSACEQG*IHQQDVPQG*LGHHRAEEPKLIAQPATLQ 332
Score = 161 bits (346), Expect(3) = 6e-045
Identities = 78/100 (78%), Positives = 79/100 (79%)
Frame = -2 / -2
Query: 519 AAR*LVGRSLRVPQHYDDRVAPEEHLTDESILVHRQSLLFALASLGDLCPXXXXXXXXXX 340
AAR LVGRS+ V QH DDRV PEEHL DESILVHRQSLLFALASLGDLCP
Sbjct: 333 AARWLVGRSVWVLQHDDDRVTPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHV 154
Query: 339 XVAIKSTNTAKQLLVVAAIDEDLGVVLNTHH*D*QRACAK 220
VAIKSTN AK LLVVAAIDE LGVVLNTHH*D*Q ACAK
Sbjct: 153 TVAIKSTNPAK*LLVVAAIDEHLGVVLNTHH*D*QGACAK 34
Score = 161 bits (346), Expect(2) = 4e-043
Identities = 76/102 (74%), Positives = 79/102 (77%)
Frame = +2 / +2
Query: 218 NLAQALCQS***VLRTTPRSSSIAATTRSCLAVFVLLIATVTWCSRTCVRCGQRSPXXXX 397
NLAQA CQS***VLRTTPR SSIAATTRS LA FVLLIATVTWCSRTC RCGQRSP
Sbjct: 32 NLAQAPCQS***VLRTTPRCSSIAATTRSYLAGFVLLIATVTWCSRTCGRCGQRSPRLAR 211
Query: 398 XXXXXXXXXXIDSSVRCSSGATRSS*C*GTRSDRPTSHLAAV 523
IDSS RCSSG TRSS C* T++DRPTSHLAA+
Sbjct: 212 AKRRLCL*TRIDSSARCSSGVTRSSSC*RTQTDRPTSHLAAM 337
Score = 150 bits (322), Expect(4) = 2e-056
Identities = 63/73 (86%), Positives = 64/73 (87%)
Frame = -1 / -1
Query: 517 CKVTGWAITSGSSAL**PSRP*GTSY**IYPCSQAEPSFCPCQSWGSLSTSHARSRAPCY 338
CKV GWAI+ GSSA **PS P*GTS **IYPCSQAEPSFCPCQSWG LSTS ARSRAPCY
Sbjct: 331 CKVAGWAISLGSSAR**PSHP*GTSC**IYPCSQAEPSFCPCQSWGPLSTSPARSRAPCY 152
Query: 337 SGDQKHEHGQAAS 299
SGDQKHE GQ AS
Sbjct: 151 SGDQKHEPGQVAS 113
Score = 55.6 bits (115), Expect(4) = 2e-056
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = -1 / -1
Query: 262 S*HSSLGLTEGLC*IPPPLSFQPD 191
S*HSSLGLT GLC*IPPPLSFQPD
Sbjct: 76 S*HSSLGLTGGLC*IPPPLSFQPD 5
Score = 46.9 bits (96), Expect(3) = 4e-079
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +2 / +1
Query: 557 SVEKTVAYVCLGGLAGYLELTFM 625
S+ KTVAYVC GGL GYLELTFM
Sbjct: 367 SLLKTVAYVCSGGLTGYLELTFM 435
Score = 46.4 bits (95), Expect(3) = 9e-063
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1 / +3
Query: 565 KNCSLCVSWRISWLS*TDVHV 627
+NCSLC+ WRI+WL *TDVHV
Sbjct: 375 ENCSLCMFWRINWLP*TDVHV 437
Score = 45.5 bits (93), Expect(3) = 4e-068
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -2 / -3
Query: 627 HMNVSSR*PANPPRHT*ATVFSTE 556
+MNVSSR*P NPP HT*ATVF+ +
Sbjct: 437 YMNVSSR*PVNPPEHT*ATVFNRD 366
Score = 43.2 bits (88), Expect(4) = 2e-056
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = -1 / -2
Query: 625 HERQFKITS*SAKTHISYSFFNR 557
HERQFK+TS*S++T+ISYSF R
Sbjct: 435 HERQFKVTS*SSRTYISYSFQQR 367
Score = 36.3 bits (73), Expect(3) = 6e-045
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3 / -1
Query: 626 T*TSVQDNQLIRQDTHKLQF 567
T*TSVQ NQLI Q+ HKLQF
Sbjct: 436 T*TSVQGNQLILQNIHKLQF 377
Score = 35.0 bits (70), Expect(2) = 4e-043
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +3 / +2
Query: 501 QPVTLQQLCPFSGFTESVPLLKKL*LMCVLAD*LVILN*RSC 626
+P + PF S L KL*LM VL D*LV LN*RSC
Sbjct: 311 RPTSHLAAMPFLWVHGSQCLC*KL*LMYVLED*LVTLN*RSC 436
Score = 29.5 bits (58), Expect(3) = 4e-079
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 519 QLCPFSGFTES 551
QLCPFSGFTE+
Sbjct: 330 QLCPFSGFTEA 362
Score = 29.0 bits (57), Expect(3) = 4e-068
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3 / -3
Query: 566 FQQRHGFREPRERA*LLQG 510
F + GFREPRERA*L G
Sbjct: 377 FNRDIGFREPRERA*LQGG 321
Score = 28.1 bits (55), Expect(3) = 9e-063
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 518 AVMPFLWVHG 547
A MPFLWVHG
Sbjct: 329 AAMPFLWVHG 358
Score = 28.1 bits (55), Expect(4) = 2e-056
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / -1
Query: 547 SVNPEKGHNC 518
SVNPEKGH+C
Sbjct: 358 SVNPEKGHSC 329
Score = 23.1 bits (44), Expect(3) = 6e-045
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -2
Query: 549 IP*TQRKGITA 517
+P*TQRKGI A
Sbjct: 360 LP*TQRKGIAA 328
>gb|BE596241.1|BE596241 PI1_51_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 269 bits (582), Expect(3) = 1e-075
Identities = 113/125 (90%), Positives = 117/125 (93%)
Frame = +1 / +1
Query: 145 ATGAEKEGGGSMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA 324
A ++ GG +MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA
Sbjct: 97 AGAEKEGGG*AMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA 276
Query: 325 FDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
FDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP * PN
Sbjct: 277 FDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN*LPN 456
Query: 505 QSPCS 519
Q PCS
Sbjct: 457 QPPCS 471
Score = 221 bits (477), Expect(4) = 2e-066
Identities = 94/100 (94%), Positives = 95/100 (95%)
Frame = -3 / -1
Query: 518 LQGDWLGDHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTML 339
LQG WLG+ FGFL TMMTESPLRNILLMNLSLFTGRAFFLPLPVLG SVHISRTFSSTML
Sbjct: 470 LQGGWLGNQFGFLRTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTML 291
Query: 338 QWRSKARTRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
QWRSKARTRPSSFLLLRQLM TWVLFLTLIIRTDRGPVLN
Sbjct: 290 QWRSKARTRPSSFLLLRQLMSTWVLFLTLIIRTDRGPVLN 171
Score = 204 bits (439), Expect(3) = 2e-055
Identities = 86/110 (78%), Positives = 89/110 (80%)
Frame = +3 / +3
Query: 189 ESGWKERGGGI*HRPSVSPNDEC*EXXXXXXXXXXXXEAAWPCSCF*SPL*HGARERA*D 368
ESGWKERGGGI*HRPSVSPNDEC*E E WP S F*SPL*HGARERA D
Sbjct: 141 ESGWKERGGGI*HRPSVSPNDEC*EQHPGAHQLPQQQETTWPGSRF*SPL*HGARERAGD 320
Query: 369 VDRDPQDWQGQKEGSACEQG*IHQ*DVPQGRLGHHSAEEPEVIAQPVTLQ 518
VDR PQDWQGQKEGSACEQG*IHQ DVPQGRLGHH +EEP++IAQP TLQ
Sbjct: 321 VDRGPQDWQGQKEGSACEQG*IHQQDVPQGRLGHHRSEEPKLIAQPATLQ 470
Score = 168 bits (362), Expect(2) = 9e-042
Identities = 83/125 (66%), Positives = 88/125 (70%)
Frame = -2 / -3
Query: 519 AAR*LVGRSLRVPQHYDDRVAPEEHLTDESILVHRQSLLFALASLGDLCPXXXXXXXXXX 340
AAR LVG+S+ VPQ+ DDRVAPEEHL DESILVHRQSLLFALASLGDLCP
Sbjct: 471 AARWLVGQSVWVPQNDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHV 292
Query: 339 XVAIKSTNTAKQLLVVAAIDEDLGVVLNTHH*D*QRACAKXXXXXXXXXXXIRHRASALL 160
VAIKS N AK LVVAAIDE LGVVLNTHH*D*QRACAK IRHR ++ L
Sbjct: 291 TVAIKSANPAK*FLVVAAIDEHLGVVLNTHH*D*QRACAKFLLLFLSSLILIRHRLASAL 112
Query: 159 FRAGG 145
G
Sbjct: 111 LLRAG 97
Score = 158 bits (339), Expect(2) = 2e-043
Identities = 75/102 (73%), Positives = 79/102 (77%)
Frame = +2 / +2
Query: 218 NLAQALCQS***VLRTTPRSSSIAATTRSCLAVFVLLIATVTWCSRTCVRCGQRSPXXXX 397
NLAQALCQS***VLRTTPR SSIAATTR+ LA F LLIATVTWCSRTC RCGQRSP
Sbjct: 170 NLAQALCQS***VLRTTPRCSSIAATTRNYLAGFALLIATVTWCSRTCGRCGQRSPRLAR 349
Query: 398 XXXXXXXXXXIDSSVRCSSGATRSS*C*GTRSDRPTSHLAAV 523
IDSS RCSSGATRSS *GT++D PTSHLAA+
Sbjct: 350 AKRRLCL*TRIDSSARCSSGATRSSSF*GTQTDCPTSHLAAM 475
Score = 144 bits (310), Expect(4) = 2e-051
Identities = 61/73 (83%), Positives = 62/73 (84%)
Frame = -1 / -2
Query: 517 CKVTGWAITSGSSAL**PSRP*GTSY**IYPCSQAEPSFCPCQSWGSLSTSHARSRAPCY 338
CKV GWAI+ GSS **PSRP*GTS **IYPCSQAEPSFCPCQSWG LSTS ARSRAPCY
Sbjct: 469 CKVAGWAISLGSSER**PSRP*GTSC**IYPCSQAEPSFCPCQSWGPLSTSPARSRAPCY 290
Query: 337 SGDQKHEHGQAAS 299
SGDQK E GQ S
Sbjct: 289 SGDQKREPGQVVS 251
Score = 58.8 bits (122), Expect(4) = 2e-051
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -1 / -2
Query: 262 S*HSSLGLTEGLC*IPPPLSFQPD 191
S*HSSLGLTEGLC*IPPPLSFQPD
Sbjct: 214 S*HSSLGLTEGLC*IPPPLSFQPD 143
Score = 39.6 bits (80), Expect(2) = 2e-043
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1 / +1
Query: 133 PERLATGAEKEGGGSMADENQAGKKEEEE 219
PERLA GAEKEGGG + K+EEE
Sbjct: 82 PERLAAGAEKEGGG*AMADENQAGKKEEE 168
Score = 30.9 bits (61), Expect(4) = 2e-066
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / -1
Query: 130 SGWCWCAP 107
SGWCWCAP
Sbjct: 86 SGWCWCAP 63
Score = 29.9 bits (59), Expect(4) = 2e-066
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -2 / -3
Query: 174 ASALLFRAGGESLR 133
ASALL RAGGESLR
Sbjct: 123 ASALLLRAGGESLR 82
Score = 29.0 bits (57), Expect(4) = 2e-066
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3 / -1
Query: 566 FQQRHGFREPRERA*LLQG 510
F + GFREPRERA*L G
Sbjct: 515 FNRDIGFREPRERA*LQGG 459
Score = 28.6 bits (56), Expect(4) = 2e-051
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1 / -1
Query: 124 WCWCAPRGENLGIF 83
WC PRG NLGIF
Sbjct: 74 WCAPTPRGGNLGIF 33
Score = 28.1 bits (55), Expect(3) = 1e-075
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 518 AVMPFLWVHG 547
A MPFLWVHG
Sbjct: 467 AAMPFLWVHG 496
Score = 28.1 bits (55), Expect(4) = 2e-051
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 547 SVNPEKGHNC 518
SVNPEKGH+C
Sbjct: 496 SVNPEKGHSC 467
Score = 26.7 bits (52), Expect(3) = 2e-055
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 511 PCSSYALSLGSRNP 552
P SYALSLGSR P
Sbjct: 460 PPCSYALSLGSRKP 501
Score = 26.7 bits (52), Expect(3) = 1e-075
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 105 LGAHQHHPE 131
+GAHQHHPE
Sbjct: 61 VGAHQHHPE 87
Score = 25.4 bits (49), Expect(3) = 2e-055
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 78 RPKIPRFSPLGAHQH 122
+ KIPRF PLG H
Sbjct: 28 KKKIPRFPPLGVGAH 72
Score = 23.1 bits (44), Expect(2) = 9e-042
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -3
Query: 549 IP*TQRKGITA 517
+P*TQRKGI A
Sbjct: 498 LP*TQRKGIAA 466
>gb|BG048656.1|BG048656 OV1_21_D05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 404
Score = 230 bits (496), Expect = 2e-059
Identities = 96/98 (97%), Positives = 97/98 (98%)
Frame = +1 / +2
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 95 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 274
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP *
Sbjct: 275 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN* 388
Score = 171 bits (369), Expect = 8e-042
Identities = 77/91 (84%), Positives = 80/91 (87%)
Frame = -3 / -3
Query: 491 FGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTR 312
FGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RSKA TR
Sbjct: 384 FGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKALTR 205
Query: 311 PSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
PSSFLL RQL+RT VLFLTLI+ T+RGPVLN
Sbjct: 204 PSSFLLFRQLIRT*VLFLTLIMSTERGPVLN 112
>gb|BG048961.1|BG048961 OV1_21_D05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 230 bits (496), Expect = 2e-059
Identities = 96/98 (97%), Positives = 97/98 (98%)
Frame = +1 / +3
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 75 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 254
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP *
Sbjct: 255 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN* 368
Score = 171 bits (369), Expect = 8e-042
Identities = 77/91 (84%), Positives = 80/91 (87%)
Frame = -3 / -2
Query: 491 FGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTR 312
FGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RSKA TR
Sbjct: 364 FGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKALTR 185
Query: 311 PSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
PSSFLL RQL+RT VLFLTLI+ T+RGPVLN
Sbjct: 184 PSSFLLFRQLIRT*VLFLTLIMSTERGPVLN 92
>gb|CD227978.1|CD227978 CCC1_5_F05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_F05_A007 3', mRNA sequence
Length = 657
Score = 230 bits (496), Expect = 2e-059
Identities = 96/98 (97%), Positives = 97/98 (98%)
Frame = +1 / +3
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 36 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 215
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP *
Sbjct: 216 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN* 329
Score = 171 bits (369), Expect = 8e-042
Identities = 77/91 (84%), Positives = 80/91 (87%)
Frame = -3 / -3
Query: 491 FGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTR 312
FGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RSKA TR
Sbjct: 325 FGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKALTR 146
Query: 311 PSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
PSSFLL RQL+RT VLFLTLI+ T+RGPVLN
Sbjct: 145 PSSFLLFRQLIRT*VLFLTLIMSTERGPVLN 53
>gb|CD228087.1|CD228087 CCC1_5_F05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_F05_A007 5', mRNA sequence
Length = 664
Score = 230 bits (496), Expect = 2e-059
Identities = 96/98 (97%), Positives = 97/98 (98%)
Frame = +1 / +2
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 131 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 310
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP *
Sbjct: 311 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN* 424
Score = 171 bits (369), Expect = 8e-042
Identities = 77/91 (84%), Positives = 80/91 (87%)
Frame = -3 / -2
Query: 491 FGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTR 312
FGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RSKA TR
Sbjct: 420 FGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKALTR 241
Query: 311 PSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
PSSFLL RQL+RT VLFLTLI+ T+RGPVLN
Sbjct: 240 PSSFLLFRQLIRT*VLFLTLIMSTERGPVLN 148
>gb|CD229764.1|CD229764 CCC1_19_H12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_19_H12_A007 5', mRNA sequence
Length = 569
Score = 230 bits (496), Expect = 2e-059
Identities = 96/98 (97%), Positives = 97/98 (98%)
Frame = +1 / +2
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 122 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 301
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP *
Sbjct: 302 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN* 415
Score = 171 bits (369), Expect = 8e-042
Identities = 77/91 (84%), Positives = 80/91 (87%)
Frame = -3 / -3
Query: 491 FGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTR 312
FGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RSKA TR
Sbjct: 411 FGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKALTR 232
Query: 311 PSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
PSSFLL RQL+RT VLFLTLI+ T+RGPVLN
Sbjct: 231 PSSFLLFRQLIRT*VLFLTLIMSTERGPVLN 139
>gb|CN148416.1|CN148416 WOUND1_56_H01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_56_H01_A002 3', mRNA sequence
Length = 600
Score = 230 bits (496), Expect = 2e-059
Identities = 96/98 (97%), Positives = 97/98 (98%)
Frame = +1 / +2
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 62 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 241
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP *
Sbjct: 242 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN* 355
Score = 171 bits (369), Expect = 8e-042
Identities = 77/91 (84%), Positives = 80/91 (87%)
Frame = -3 / -1
Query: 491 FGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTR 312
FGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RSKA TR
Sbjct: 351 FGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKALTR 172
Query: 311 PSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
PSSFLL RQL+RT VLFLTLI+ T+RGPVLN
Sbjct: 171 PSSFLLFRQLIRT*VLFLTLIMSTERGPVLN 79
>gb|CN148481.1|CN148481 WOUND1_56_H01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_56_H01_A002 5', mRNA sequence
Length = 661
Score = 230 bits (496), Expect = 2e-059
Identities = 96/98 (97%), Positives = 97/98 (98%)
Frame = +1 / +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 106 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 285
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP *
Sbjct: 286 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN* 399
Score = 171 bits (369), Expect = 8e-042
Identities = 77/91 (84%), Positives = 80/91 (87%)
Frame = -3 / -3
Query: 491 FGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTR 312
FGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G SVHIS TFS TMLQ RSKA TR
Sbjct: 395 FGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKALTR 216
Query: 311 PSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
PSSFLL RQL+RT VLFLTLI+ T+RGPVLN
Sbjct: 215 PSSFLLFRQLIRT*VLFLTLIMSTERGPVLN 123
>gb|BF421370.1|BF421370 FM1_7_H02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 390
Score = 216 bits (467), Expect(2) = 3e-057
Identities = 90/99 (90%), Positives = 94/99 (94%)
Frame = +1 / +1
Query: 145 ATGAEKEGGGSMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA 324
A ++ GG +MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA
Sbjct: 94 AGAEKEGGG*AMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA 273
Query: 325 FDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFIS 441
FDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFIS
Sbjct: 274 FDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFIS 390
Score = 168 bits (361), Expect(4) = 3e-049
Identities = 72/74 (97%), Positives = 72/74 (97%)
Frame = -3 / -2
Query: 440 LMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRTWVLF 261
LMNLSLFTGRAFFLPLPVLG SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM TWVLF
Sbjct: 389 LMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMSTWVLF 210
Query: 260 LTLIIRTDRGPVLN 219
LTLIIRTDRGPVLN
Sbjct: 209 LTLIIRTDRGPVLN 168
Score = 159 bits (342), Expect(2) = 1e-039
Identities = 67/84 (79%), Positives = 67/84 (79%)
Frame = +3 / +3
Query: 189 ESGWKERGGGI*HRPSVSPNDEC*EXXXXXXXXXXXXEAAWPCSCF*SPL*HGARERA*D 368
ESGWKERGGGI*HRP VSPNDEC*E EA WP SCF*SPL*HGARERA D
Sbjct: 138 ESGWKERGGGI*HRPPVSPNDEC*EQHPGAHQLPQQQEATWPGSCF*SPL*HGARERAGD 317
Query: 369 VDRDPQDWQGQKEGSACEQG*IHQ 440
VDR PQDWQGQKEGSACEQG*IHQ
Sbjct: 318 VDRGPQDWQGQKEGSACEQG*IHQ 389
Score = 126 bits (270), Expect = 3e-028
Identities = 64/98 (65%), Positives = 66/98 (67%)
Frame = -2 / -1
Query: 438 DESILVHRQSLLFALASLGDLCPXXXXXXXXXXXVAIKSTNTAKQLLVVAAIDEDLGVVL 259
DESILVHRQSLLFALASLGDLCP VAIKSTN AK LLVVAAIDE LGVVL
Sbjct: 387 DESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTNPAK*LLVVAAIDEHLGVVL 208
Query: 258 NTHH*D*QRACAKXXXXXXXXXXXIRHRASALLFRAGG 145
NTHH*D*Q ACAK IRHR ++ L G
Sbjct: 207 NTHH*D*QGACAKFLLLFLSSLILIRHRLASALLLRAG 94
Score = 113 bits (241), Expect(2) = 4e-030
Identities = 55/74 (74%), Positives = 55/74 (74%)
Frame = +2 / +2
Query: 218 NLAQALCQS***VLRTTPRSSSIAATTRSCLAVFVLLIATVTWCSRTCVRCGQRSPXXXX 397
NLAQA CQS***VLRTTPR SSIAATTRS LA FVLLIATVTWCSRTC RCGQRSP
Sbjct: 167 NLAQAPCQS***VLRTTPRCSSIAATTRSYLAGFVLLIATVTWCSRTCGRCGQRSPRLAR 346
Query: 398 XXXXXXXXXXIDSS 439
IDSS
Sbjct: 347 AKRRLCL*TRIDSS 388
Score = 108 bits (230), Expect(3) = 1e-036
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = -1 / -3
Query: 439 **IYPCSQAEPSFCPCQSWGSLSTSHARSRAPCYSGDQKHEHGQAAS 299
**IYPCSQAEPSFCPCQSWG LSTS ARSRAPCYSGDQKHE GQ AS
Sbjct: 388 **IYPCSQAEPSFCPCQSWGPLSTSPARSRAPCYSGDQKHEPGQVAS 248
Score = 55.6 bits (115), Expect(3) = 1e-036
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = -1 / -3
Query: 262 S*HSSLGLTEGLC*IPPPLSFQPD 191
S*HSSLGLT GLC*IPPPLSFQPD
Sbjct: 211 S*HSSLGLTGGLC*IPPPLSFQPD 140
Score = 39.6 bits (80), Expect(2) = 4e-030
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1 / +1
Query: 133 PERLATGAEKEGGGSMADENQAGKKEEEE 219
PERLA GAEKEGGG + K+EEE
Sbjct: 79 PERLAAGAEKEGGG*AMADENQAGKKEEE 165
Score = 30.9 bits (61), Expect(4) = 3e-049
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / -2
Query: 130 SGWCWCAP 107
SGWCWCAP
Sbjct: 83 SGWCWCAP 60
Score = 29.9 bits (59), Expect(4) = 3e-049
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -2 / -1
Query: 174 ASALLFRAGGESLR 133
ASALL RAGGESLR
Sbjct: 120 ASALLLRAGGESLR 79
Score = 28.6 bits (56), Expect(3) = 1e-036
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1 / -2
Query: 124 WCWCAPRGENLGIF 83
WC PRG NLGIF
Sbjct: 71 WCAPTPRGGNLGIF 30
Score = 26.7 bits (52), Expect(2) = 3e-057
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 105 LGAHQHHPE 131
+GAHQHHPE
Sbjct: 58 VGAHQHHPE 84
Score = 24.9 bits (48), Expect(2) = 1e-039
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3 / +1
Query: 84 KIPRFSPLGAHQH 122
KIPRF PLG H
Sbjct: 31 KIPRFPPLGVGAH 69
Score = 24.0 bits (46), Expect(4) = 3e-049
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3 / -1
Query: 86 FWACFSSPFC 57
FWAC S P C
Sbjct: 30 FWACLSFPSC 1
>gb|CW022584.1|CW022584 104_162_10431932_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431932, DNA
sequence
Length = 758
Score = 94.5 bits (200), Expect(5) = 2e-056
Identities = 38/46 (82%), Positives = 41/46 (89%)
Frame = +1 / +3
Query: 244 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
L ++V QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 171 LKLTVS*CIQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 308
Score = 93.6 bits (198), Expect(5) = 2e-056
Identities = 39/47 (82%), Positives = 41/47 (87%)
Frame = +1 / +3
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPCS 519
+PK +GKKKALPVNKDRFISKMFL GDSVIIVLRNP * PNQ PCS
Sbjct: 402 VPKIWQGKKKALPVNKDRFISKMFLXGDSVIIVLRNPN*LPNQPPCS 542
Score = 93.6 bits (198), Expect(5) = 3e-054
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = -3 / -2
Query: 518 LQGDWLGDHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
LQG WLG+ FGFL TMMTESP RNILLMNLSLFTGRAFFLP +LG
Sbjct: 541 LQGGWLGNQFGFLRTMMTESPXRNILLMNLSLFTGRAFFLPCQILG 404
Score = 92.3 bits (195), Expect(4) = 7e-045
Identities = 37/46 (80%), Positives = 40/46 (86%)
Frame = +3 / +2
Query: 381 PQDWQGQKEGSACEQG*IHQ*DVPQGRLGHHSAEEPEVIAQPVTLQ 518
PQD GQKEGSACEQG*IHQ DVP GRLGHH +EEP++IAQP TLQ
Sbjct: 404 PQDLAGQKEGSACEQG*IHQQDVPXGRLGHHRSEEPKLIAQPATLQ 541
Score = 91.8 bits (194), Expect(4) = 1e-038
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = -1 / -3
Query: 517 CKVTGWAITSGSSAL**PSRP*GTSY**IYPCSQAEPSFCPCQSWG 380
CKV GWAI+ GSS **PSRP*GTS **IYPCSQAEPSFCP +SWG
Sbjct: 540 CKVAGWAISLGSSER**PSRP*GTSC**IYPCSQAEPSFCPARSWG 403
Score = 83.1 bits (175), Expect(4) = 4e-028
Identities = 38/48 (79%), Positives = 41/48 (85%)
Frame = -2 / -1
Query: 519 AAR*LVGRSLRVPQHYDDRVAPEEHLTDESILVHRQSLLFALASLGDL 376
AAR LVG+S+ VPQ+ DDRVA EEHL DESILVHRQSLLFAL LGDL
Sbjct: 542 AARWLVGQSVWVPQNDDDRVAXEEHLADESILVHRQSLLFALPDLGDL 399
Score = 79.4 bits (167), Expect(5) = 3e-054
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -3 / -2
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM T
Sbjct: 304 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMST 200
Score = 71.2 bits (149), Expect(4) = 7e-045
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2 / +1
Query: 272 RSSSIAATTRSCLAVFVLLIATVTWCSRTCVRCGQR 379
R SSIAATTR+ LA F LLIATVTWCSRTC RCGQR
Sbjct: 199 RCSSIAATTRNYLAGFALLIATVTWCSRTCGRCGQR 306
Score = 53.3 bits (110), Expect(3) = 6e-021
Identities = 27/49 (55%), Positives = 30/49 (61%)
Frame = +2 / +1
Query: 377 RSPXXXXXXXXXXXXXXIDSSVRCSSGATRSS*C*GTRSDRPTSHLAAV 523
RSP IDSS RCSS ATRSS *GT++D PTSHLAA+
Sbjct: 400 RSPRSGRAKRRLCL*TRIDSSARCSSXATRSSSF*GTQTDCPTSHLAAM 546
Score = 50.6 bits (104), Expect(4) = 1e-038
Identities = 21/26 (80%), Positives = 21/26 (80%)
Frame = -1 / -3
Query: 376 LSTSHARSRAPCYSGDQKHEHGQAAS 299
LSTS ARSRAPCYSGDQK E GQ S
Sbjct: 303 LSTSPARSRAPCYSGDQKREPGQVVS 226
Score = 49.2 bits (101), Expect(5) = 2e-056
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +1 / +2
Query: 565 KNCSLCVSWRISWLS*TDVHVTW 633
+NCSLC+ WRI+WL *TDVHVT+
Sbjct: 584 ENCSLCMFWRINWLP*TDVHVTF 652
Score = 49.2 bits (101), Expect(5) = 3e-054
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -2 / -2
Query: 627 HMNVSSR*PANPPRHT*ATVFSTE 556
HMNVSSR*P NPP+HT*ATVF+ +
Sbjct: 646 HMNVSSR*PVNPPKHT*ATVFNRD 575
Score = 48.3 bits (99), Expect(4) = 7e-045
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +2 / +3
Query: 557 SVEKTVAYVCLGGLAGYLELTFM* 628
S+ KTVAYVC GGL GYLELTFM*
Sbjct: 576 SLLKTVAYVCFGGLTGYLELTFM* 647
Score = 47.8 bits (98), Expect(3) = 6e-021
Identities = 21/26 (80%), Positives = 21/26 (80%)
Frame = +3 / +2
Query: 300 EAAWPCSCF*SPL*HGARERA*DVDR 377
E WP S F*SPL*HGARERA DVDR
Sbjct: 227 ETTWPGSRF*SPL*HGARERAGDVDR 304
Score = 46.4 bits (95), Expect(4) = 1e-038
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = -1 / -1
Query: 628 SHERQFKITS*SAKTHISYSFFNR 557
SHERQFK+TS*S+KT+ISYSF R
Sbjct: 647 SHERQFKVTS*SSKTYISYSFQQR 576
Score = 38.2 bits (77), Expect(3) = 6e-021
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3 / +1
Query: 528 PFSGFTESVPLLKKL*LMCVLAD*LVILN*RSCDM 632
PF S L KL*LM VL D*LV LN*RSCD+
Sbjct: 547 PFLWVHGSQCLC*KL*LMYVLED*LVTLN*RSCDL 651
Score = 38.2 bits (77), Expect(4) = 4e-028
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = -3 / -3
Query: 629 VT*TSVQDNQLIRQDTHKLQF 567
VT*TSVQ NQLI Q+ HKLQF
Sbjct: 648 VT*TSVQGNQLILQNIHKLQF 586
Score = 36.8 bits (74), Expect(4) = 4e-028
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -2 / -1
Query: 378 LCPXXXXXXXXXXXVAIKSTNTAKQLLVVAAIDEDLGVVLNT 253
LCP VAIKS N AK LVVAAIDE L N+
Sbjct: 305 LCPHLPHVLEHHVTVAIKSANPAK*FLVVAAIDEHLNTSGNS 180
Score = 36.8 bits (74), Expect(5) = 3e-054
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -3 / -3
Query: 725 KQKCNLNIQGSKYCKRQLTTKLMKRM 648
K KC LNIQ SKYC+R + T + K M
Sbjct: 729 KHKCKLNIQRSKYCRR*VHTPVNKLM 652
Score = 29.9 bits (59), Expect(5) = 2e-056
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1 / +2
Query: 649 IRFMSLVVNWRLQYFDPWMLRLHFCL 726
I ++ V + LQYFD ML LH CL
Sbjct: 653 ISLLTGVCTYLLQYFDL*MLSLHLCL 730
Score = 29.0 bits (57), Expect(5) = 3e-054
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3 / -2
Query: 566 FQQRHGFREPRERA*LLQG 510
F + GFREPRERA*L G
Sbjct: 586 FNRDIGFREPRERA*LQGG 530
Score = 28.1 bits (55), Expect(5) = 2e-056
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 518 AVMPFLWVHG 547
A MPFLWVHG
Sbjct: 538 AAMPFLWVHG 567
Score = 28.1 bits (55), Expect(4) = 1e-038
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / -3
Query: 547 SVNPEKGHNC 518
SVNPEKGH+C
Sbjct: 567 SVNPEKGHSC 538
Score = 26.7 bits (52), Expect(4) = 7e-045
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 511 PCSSYALSLGSRNP 552
P SYALSLGSR P
Sbjct: 531 PPCSYALSLGSRKP 572
Score = 23.1 bits (44), Expect(4) = 4e-028
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / -1
Query: 549 IP*TQRKGITA 517
+P*TQRKGI A
Sbjct: 569 LP*TQRKGIAA 537
>gb|CW083471.1|CW083471 104_425_10944264_114_32351_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 679
Score = 104 bits (222), Expect(3) = 7e-047
Identities = 43/47 (91%), Positives = 44/47 (93%)
Frame = +1 / -1
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPCS 519
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP * PNQ PCS
Sbjct: 181 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN*LPNQPPCS 41
Score = 103 bits (220), Expect(3) = 3e-039
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +3 / -3
Query: 381 PQDWQGQKEGSACEQG*IHQ*DVPQGRLGHHSAEEPEVIAQPVTLQ 518
PQDWQGQKEGSACEQG*IHQ DVPQGRLGHH +EEP++IAQP TLQ
Sbjct: 179 PQDWQGQKEGSACEQG*IHQQDVPQGRLGHHRSEEPKLIAQPATLQ 42
Score = 102 bits (217), Expect(3) = 1e-041
Identities = 42/46 (91%), Positives = 43/46 (93%)
Frame = -3 / +3
Query: 518 LQGDWLGDHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
LQG WLG+ FGFL TMMTESPLRNILLMNLSLFTGRAFFLPLPVLG
Sbjct: 42 LQGGWLGNQFGFLRTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 179
Score = 97.7 bits (207), Expect(3) = 8e-032
Identities = 40/46 (86%), Positives = 41/46 (89%)
Frame = -1 / +1
Query: 517 CKVTGWAITSGSSAL**PSRP*GTSY**IYPCSQAEPSFCPCQSWG 380
CKV GWAI+ GSS **PSRP*GTS **IYPCSQAEPSFCPCQSWG
Sbjct: 43 CKVAGWAISLGSSER**PSRP*GTSC**IYPCSQAEPSFCPCQSWG 180
Score = 94.5 bits (200), Expect(3) = 7e-047
Identities = 38/46 (82%), Positives = 41/46 (89%)
Frame = +1 / -1
Query: 244 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
L ++V QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 412 LKLTVS*CIQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 275
Score = 91.3 bits (193), Expect(3) = 2e-024
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = -2 / +2
Query: 519 AAR*LVGRSLRVPQHYDDRVAPEEHLTDESILVHRQSLLFALASLGDL 376
AAR LVG+S+ VPQ+ DDRVAPEEHL DESILVHRQSLLFALASLGDL
Sbjct: 41 AARWLVGQSVWVPQNDDDRVAPEEHLADESILVHRQSLLFALASLGDL 184
Score = 79.4 bits (167), Expect(3) = 1e-041
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -3 / +3
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM T
Sbjct: 279 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMST 383
Score = 71.2 bits (149), Expect(3) = 3e-039
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2 / -2
Query: 272 RSSSIAATTRSCLAVFVLLIATVTWCSRTCVRCGQR 379
R SSIAATTR+ LA F LLIATVTWCSRTC RCGQR
Sbjct: 384 RCSSIAATTRNYLAGFALLIATVTWCSRTCGRCGQR 277
Score = 50.6 bits (104), Expect(3) = 8e-032
Identities = 21/26 (80%), Positives = 21/26 (80%)
Frame = -1 / +1
Query: 376 LSTSHARSRAPCYSGDQKHEHGQAAS 299
LSTS ARSRAPCYSGDQK E GQ S
Sbjct: 280 LSTSPARSRAPCYSGDQKREPGQVVS 357
Score = 36.8 bits (74), Expect(3) = 2e-024
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -2 / +2
Query: 378 LCPXXXXXXXXXXXVAIKSTNTAKQLLVVAAIDEDLGVVLNT 253
LCP VAIKS N AK LVVAAIDE L N+
Sbjct: 278 LCPHLPHVLEHHVTVAIKSANPAK*FLVVAAIDEHLNTSGNS 403
Score = 28.1 bits (55), Expect(3) = 7e-047
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / -2
Query: 518 AVMPFLWVHG 547
A MPFLWVHG
Sbjct: 45 AAMPFLWVHG 16
Score = 28.1 bits (55), Expect(3) = 8e-032
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 547 SVNPEKGHNC 518
SVNPEKGH+C
Sbjct: 16 SVNPEKGHSC 45
Score = 28.1 bits (55), Expect(3) = 1e-041
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / +3
Query: 551 GFREPRERA*LLQG 510
GFREPRERA*L G
Sbjct: 12 GFREPRERA*LQGG 53
Score = 26.7 bits (52), Expect(3) = 3e-039
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / -1
Query: 511 PCSSYALSLGSRNP 552
P SYALSLGSR P
Sbjct: 52 PPCSYALSLGSRKP 11
Score = 23.1 bits (44), Expect(3) = 2e-024
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / +2
Query: 549 IP*TQRKGITA 517
+P*TQRKGI A
Sbjct: 14 LP*TQRKGIAA 46
>gb|CW083472.1|CW083472 104_425_10944264_114_32387_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 629
Score = 104 bits (222), Expect(3) = 7e-047
Identities = 43/47 (91%), Positives = 44/47 (93%)
Frame = +1 / -1
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPCS 519
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP * PNQ PCS
Sbjct: 182 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN*LPNQPPCS 42
Score = 103 bits (220), Expect(3) = 3e-039
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +3 / -3
Query: 381 PQDWQGQKEGSACEQG*IHQ*DVPQGRLGHHSAEEPEVIAQPVTLQ 518
PQDWQGQKEGSACEQG*IHQ DVPQGRLGHH +EEP++IAQP TLQ
Sbjct: 180 PQDWQGQKEGSACEQG*IHQQDVPQGRLGHHRSEEPKLIAQPATLQ 43
Score = 102 bits (217), Expect(3) = 1e-041
Identities = 42/46 (91%), Positives = 43/46 (93%)
Frame = -3 / +1
Query: 518 LQGDWLGDHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
LQG WLG+ FGFL TMMTESPLRNILLMNLSLFTGRAFFLPLPVLG
Sbjct: 43 LQGGWLGNQFGFLRTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 180
Score = 97.7 bits (207), Expect(3) = 8e-032
Identities = 40/46 (86%), Positives = 41/46 (89%)
Frame = -1 / +2
Query: 517 CKVTGWAITSGSSAL**PSRP*GTSY**IYPCSQAEPSFCPCQSWG 380
CKV GWAI+ GSS **PSRP*GTS **IYPCSQAEPSFCPCQSWG
Sbjct: 44 CKVAGWAISLGSSER**PSRP*GTSC**IYPCSQAEPSFCPCQSWG 181
Score = 94.5 bits (200), Expect(3) = 7e-047
Identities = 38/46 (82%), Positives = 41/46 (89%)
Frame = +1 / -1
Query: 244 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
L ++V QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 413 LKLTVS*CIQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 276
Score = 91.3 bits (193), Expect(3) = 2e-024
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = -2 / +3
Query: 519 AAR*LVGRSLRVPQHYDDRVAPEEHLTDESILVHRQSLLFALASLGDL 376
AAR LVG+S+ VPQ+ DDRVAPEEHL DESILVHRQSLLFALASLGDL
Sbjct: 42 AARWLVGQSVWVPQNDDDRVAPEEHLADESILVHRQSLLFALASLGDL 185
Score = 79.4 bits (167), Expect(3) = 1e-041
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -3 / +1
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM T
Sbjct: 280 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMST 384
Score = 71.2 bits (149), Expect(3) = 3e-039
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2 / -2
Query: 272 RSSSIAATTRSCLAVFVLLIATVTWCSRTCVRCGQR 379
R SSIAATTR+ LA F LLIATVTWCSRTC RCGQR
Sbjct: 385 RCSSIAATTRNYLAGFALLIATVTWCSRTCGRCGQR 278
Score = 50.6 bits (104), Expect(3) = 8e-032
Identities = 21/26 (80%), Positives = 21/26 (80%)
Frame = -1 / +2
Query: 376 LSTSHARSRAPCYSGDQKHEHGQAAS 299
LSTS ARSRAPCYSGDQK E GQ S
Sbjct: 281 LSTSPARSRAPCYSGDQKREPGQVVS 358
Score = 36.8 bits (74), Expect(3) = 2e-024
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -2 / +3
Query: 378 LCPXXXXXXXXXXXVAIKSTNTAKQLLVVAAIDEDLGVVLNT 253
LCP VAIKS N AK LVVAAIDE L N+
Sbjct: 279 LCPHLPHVLEHHVTVAIKSANPAK*FLVVAAIDEHLNTSGNS 404
Score = 28.1 bits (55), Expect(3) = 7e-047
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / -2
Query: 518 AVMPFLWVHG 547
A MPFLWVHG
Sbjct: 46 AAMPFLWVHG 17
Score = 28.1 bits (55), Expect(3) = 8e-032
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1 / +2
Query: 547 SVNPEKGHNC 518
SVNPEKGH+C
Sbjct: 17 SVNPEKGHSC 46
Score = 28.1 bits (55), Expect(3) = 1e-041
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / +1
Query: 551 GFREPRERA*LLQG 510
GFREPRERA*L G
Sbjct: 13 GFREPRERA*LQGG 54
Score = 26.7 bits (52), Expect(3) = 3e-039
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / -1
Query: 511 PCSSYALSLGSRNP 552
P SYALSLGSR P
Sbjct: 53 PPCSYALSLGSRKP 12
Score = 23.1 bits (44), Expect(3) = 2e-024
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 549 IP*TQRKGITA 517
+P*TQRKGI A
Sbjct: 15 LP*TQRKGIAA 47
>gb|CW246897.1|CW246897 104_707_11221527_148_35088_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 738
Score = 95.9 bits (203), Expect(4) = 2e-046
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +1 / +2
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPCS 519
+PKTGKGKKKALPVNKDRFISKMFL GDSVIIVLR P+ PN +PCS
Sbjct: 521 VPKTGKGKKKALPVNKDRFISKMFLXGDSVIIVLRKPQLMPNPAPCS 661
Score = 94.5 bits (200), Expect(4) = 2e-046
Identities = 38/46 (82%), Positives = 41/46 (89%)
Frame = +1 / +2
Query: 244 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
L ++V QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 290 LKLTVS*CIQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 427
Score = 91.8 bits (194), Expect(4) = 5e-038
Identities = 37/46 (80%), Positives = 38/46 (82%)
Frame = +3 / +1
Query: 381 PQDWQGQKEGSACEQG*IHQ*DVPQGRLGHHSAEEPEVIAQPVTLQ 518
PQDWQGQKEGSACEQG*IHQ DVP GRLGHH +EE AQP TLQ
Sbjct: 523 PQDWQGQKEGSACEQG*IHQQDVPXGRLGHHRSEETPTDAQPSTLQ 660
Score = 90.9 bits (192), Expect(4) = 2e-040
Identities = 38/46 (82%), Positives = 38/46 (82%)
Frame = -1 / -2
Query: 517 CKVTGWAITSGSSAL**PSRP*GTSY**IYPCSQAEPSFCPCQSWG 380
CKV GWA SS **PSRP*GTS **IYPCSQAEPSFCPCQSWG
Sbjct: 659 CKVLGWASVGVSSER**PSRP*GTSC**IYPCSQAEPSFCPCQSWG 522
Score = 89.0 bits (188), Expect(3) = 2e-028
Identities = 39/46 (84%), Positives = 40/46 (86%)
Frame = -3 / -1
Query: 518 LQGDWLGDHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
LQG LG +GFL TMMTESP RNILLMNLSLFTGRAFFLPLPVLG
Sbjct: 660 LQGAGLGISWGFLRTMMTESPXRNILLMNLSLFTGRAFFLPLPVLG 523
Score = 79.4 bits (167), Expect(4) = 2e-040
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -3 / -1
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM T
Sbjct: 423 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMST 319
Score = 71.2 bits (149), Expect(4) = 5e-038
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2 / +3
Query: 272 RSSSIAATTRSCLAVFVLLIATVTWCSRTCVRCGQR 379
R SSIAATTR+ LA F LLIATVTWCSRTC RCGQR
Sbjct: 318 RCSSIAATTRNYLAGFALLIATVTWCSRTCGRCGQR 425
Score = 50.6 bits (104), Expect(3) = 2e-028
Identities = 21/26 (80%), Positives = 21/26 (80%)
Frame = -1 / -2
Query: 376 LSTSHARSRAPCYSGDQKHEHGQAAS 299
LSTS ARSRAPCYSGDQK E GQ S
Sbjct: 422 LSTSPARSRAPCYSGDQKREPGQVVS 345
Score = 27.2 bits (53), Expect(4) = 2e-046
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1 / +1
Query: 565 KNCSLCVSWRIS 600
+NCSLC+ WRI+
Sbjct: 703 ENCSLCMFWRIT 738
Score = 26.7 bits (52), Expect(4) = 5e-038
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 557 SVEKTVAYVCLGG 595
S+ KTVAYVC GG
Sbjct: 695 SLLKTVAYVCFGG 733
Score = 26.7 bits (52), Expect(4) = 2e-040
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3 / -1
Query: 566 FQQRHGFREPRERA*L 519
F + GFR+PRERA*L
Sbjct: 705 FNRDIGFRDPRERA*L 658
Score = 26.3 bits (51), Expect(4) = 2e-046
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3 / +1
Query: 519 QLCPFSGFTES 551
QLCPFSG TE+
Sbjct: 658 QLCPFSGVTEA 690
Score = 26.3 bits (51), Expect(4) = 2e-040
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2 / -1
Query: 594 PPRHT*ATVFSTE 556
PP+HT*ATVF+ +
Sbjct: 732 PPKHT*ATVFNRD 694
Score = 25.4 bits (49), Expect(4) = 5e-038
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 520 SYALSLGSRNP 552
SYALSLGSR P
Sbjct: 659 SYALSLGSRKP 691
Score = 25.4 bits (49), Expect(3) = 2e-028
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1 / -2
Query: 547 SVNPEKGHNC 518
SV PEKGH+C
Sbjct: 686 SVTPEKGHSC 657
>gb|CW246898.1|CW246898 104_707_11221527_148_37606_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 680
Score = 98.2 bits (208), Expect(3) = 3e-042
Identities = 41/47 (87%), Positives = 42/47 (89%)
Frame = +1 / +1
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPCS 519
+PKTGKGKKKALPVNKDRFISKMFL GDSVIIVLRNP * NQ PCS
Sbjct: 523 VPKTGKGKKKALPVNKDRFISKMFLXGDSVIIVLRNPN*IANQPPCS 663
Score = 95.9 bits (203), Expect(2) = 2e-034
Identities = 37/46 (80%), Positives = 40/46 (86%)
Frame = +3 / +3
Query: 381 PQDWQGQKEGSACEQG*IHQ*DVPQGRLGHHSAEEPEVIAQPVTLQ 518
PQDWQGQKEGSACEQG*IHQ DVP GRLGHH +EEP++ QP TLQ
Sbjct: 525 PQDWQGQKEGSACEQG*IHQQDVPXGRLGHHRSEEPKLNCQPATLQ 662
Score = 95.5 bits (202), Expect(3) = 6e-037
Identities = 40/46 (86%), Positives = 40/46 (86%)
Frame = -3 / -1
Query: 518 LQGDWLGDHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
LQG WL FGFL TMMTESP RNILLMNLSLFTGRAFFLPLPVLG
Sbjct: 662 LQGGWLAIQFGFLRTMMTESPXRNILLMNLSLFTGRAFFLPLPVLG 525
Score = 94.5 bits (200), Expect(3) = 3e-042
Identities = 38/46 (82%), Positives = 41/46 (89%)
Frame = +1 / +1
Query: 244 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
L ++V QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 292 LKLTVS*CIQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 429
Score = 93.6 bits (198), Expect(2) = 1e-027
Identities = 38/46 (82%), Positives = 39/46 (84%)
Frame = -1 / -2
Query: 517 CKVTGWAITSGSSAL**PSRP*GTSY**IYPCSQAEPSFCPCQSWG 380
CKV GW + GSS **PSRP*GTS **IYPCSQAEPSFCPCQSWG
Sbjct: 661 CKVAGWQFSLGSSER**PSRP*GTSC**IYPCSQAEPSFCPCQSWG 524
Score = 86.8 bits (183), Expect(2) = 2e-021
Identities = 40/48 (83%), Positives = 42/48 (87%)
Frame = -2 / -3
Query: 519 AAR*LVGRSLRVPQHYDDRVAPEEHLTDESILVHRQSLLFALASLGDL 376
AAR LVG S+ VPQ+ DDRVA EEHL DESILVHRQSLLFALASLGDL
Sbjct: 663 AARWLVGNSVWVPQNDDDRVAXEEHLADESILVHRQSLLFALASLGDL 520
Score = 79.4 bits (167), Expect(3) = 6e-037
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -3 / -1
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM T
Sbjct: 425 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMST 321
Score = 71.2 bits (149), Expect(2) = 2e-034
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2 / +2
Query: 272 RSSSIAATTRSCLAVFVLLIATVTWCSRTCVRCGQR 379
R SSIAATTR+ LA F LLIATVTWCSRTC RCGQR
Sbjct: 320 RCSSIAATTRNYLAGFALLIATVTWCSRTCGRCGQR 427
Score = 50.6 bits (104), Expect(2) = 1e-027
Identities = 21/26 (80%), Positives = 21/26 (80%)
Frame = -1 / -2
Query: 376 LSTSHARSRAPCYSGDQKHEHGQAAS 299
LSTS ARSRAPCYSGDQK E GQ S
Sbjct: 424 LSTSPARSRAPCYSGDQKREPGQVVS 347
Score = 36.8 bits (74), Expect(2) = 2e-021
Identities = 21/42 (50%), Positives = 22/42 (52%)
Frame = -2 / -3
Query: 378 LCPXXXXXXXXXXXVAIKSTNTAKQLLVVAAIDEDLGVVLNT 253
LCP VAIKS N AK LVVAAIDE L N+
Sbjct: 426 LCPHLPHVLEHHVTVAIKSANPAK*FLVVAAIDEHLNTSGNS 301
Score = 21.7 bits (41), Expect(3) = 3e-042
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +3
Query: 519 QLCPFSG 539
QLCPFSG
Sbjct: 660 QLCPFSG 680
Score = 21.7 bits (41), Expect(3) = 6e-037
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -1 / -2
Query: 538 PEKGHNC 518
PEKGH+C
Sbjct: 679 PEKGHSC 659
>gb|CW102865.1|CW102865 104_471_11011572_116_34429_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011572, DNA
sequence
Length = 705
Score = 91.3 bits (193), Expect(2) = 2e-038
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +1 / +3
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 288 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 395
Score = 89.5 bits (189), Expect(2) = 2e-038
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +1 / +1
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
++PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP *
Sbjct: 481 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPN* 600
Score = 81.3 bits (171), Expect(2) = 8e-028
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = -3 / -2
Query: 491 FGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
FGFL TMMTESP RNILLMNLSLFTGRAFFLPLPV G
Sbjct: 596 FGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFG 486
Score = 63.8 bits (133), Expect(2) = 8e-028
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = -3 / -3
Query: 377 SVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 273
SVHIS TFS TMLQ RSKA TRPSSFLL RQL+RT
Sbjct: 391 SVHISLTFSRTMLQCRSKALTRPSSFLLFRQLIRT 287
>gb|CW161652.1|CW161652 104_568_11150526_148_36435_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150526, DNA
sequence
Length = 670
Score = 80.3 bits (169), Expect(2) = 5e-023
Identities = 33/40 (82%), Positives = 38/40 (95%)
Frame = +1 / +2
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 495
++PKTGKGKK ALPVNKDRFISK+FLRG+ VIIVLR+PK*
Sbjct: 320 QVPKTGKGKKAALPVNKDRFISKIFLRGNRVIIVLRDPK* 439
Score = 48.7 bits (100), Expect(2) = 5e-023
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +1 / +1
Query: 307 LGRVRAFDRHCNMVLENVREM 369
LGRV AFDRHCNM LENVREM
Sbjct: 169 LGRVSAFDRHCNMFLENVREM 231
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 907,800,852
Number of Sequences: 832831
Number of extensions: 13147091
Number of successful extensions: 121666
Number of sequences better than 1.0e-020: 24
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 22693413262
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)