TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.5
(545 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stresse... 160 2e-057
gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1... 155 6e-057
gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (L... 159 2e-055
gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stresse... 160 2e-054
gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (L... 155 3e-054
gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cD... 138 2e-050
gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sor... 155 6e-047
gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sor... 155 4e-046
gb|CW336100.1|CW336100 104_835_11483410_116_36097_043 Sorgh... 109 3e-026
gb|CW336101.1|CW336101 104_835_11483410_148_36101_043 Sorgh... 109 4e-023
gb|CW170924.1|CW170924 104_581_11155469_148_36522_023 Sorgh... 53 5e-023
>gb|CF772774.1|CF772774 DSBF1_39_C05.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_39_C05_A010 3', mRNA sequence
Length = 426
Score = 160 bits (345), Expect(7) = 2e-057
Identities = 64/73 (87%), Positives = 66/73 (90%)
Frame = +1 / -2
Query: 268 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQNPSRYC 447
LFLLPFLEYLKFLRN GSIPLVEVWRWRLGFLMPFLCAL DWLCAVWFFDLAI NPS C
Sbjct: 221 LFLLPFLEYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCSC 42
Query: 448 S*SPATEQISGGV 486
S SPA+ Q+SGGV
Sbjct: 41 SYSPASGQVSGGV 3
Score = 155 bits (334), Expect(5) = 9e-050
Identities = 69/83 (83%), Positives = 73/83 (87%)
Frame = -3 / +3
Query: 486 HAATDLLCCW*LGAVARGILDGQVEEPHGA*PIVQGAQERHQEAQAPPPDLHQGDGPEVS 307
HAA DL *+GA ARGI DGQV+EPHGA*P+VQGAQERHQEAQAPPPDLHQGDGP VS
Sbjct: 3 HAAADLPRRR*IGAGARGIRDGQVKEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGP*VS 182
Query: 306 EELEVLKEGQQEEWRG*VRGVR* 238
EELEVLKEGQQEEW G* RGV+*
Sbjct: 183 EELEVLKEGQQEEW*G*GRGVK* 251
Score = 135 bits (289), Expect(4) = 1e-038
Identities = 55/62 (88%), Positives = 58/62 (93%)
Frame = -1 / +1
Query: 470 CSVAGD*EQ*REGFWMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY 291
C AG+*EQ +EGF MAKSKNHTAHNQS+KAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY
Sbjct: 19 CPDAGE*EQEQEGFGMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY 198
Query: 290 SR 285
SR
Sbjct: 199 SR 204
Score = 65.2 bits (136), Expect(5) = 3e-021
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +2 / -3
Query: 380 P*TIGYAPCGSSTWPSRIPLATAPSHQQQSRSVAA* 487
P T GYAPCGS TWPSRIPLA AP H+++ RS AA*
Sbjct: 109 PCTTGYAPCGSLTWPSRIPLAPAPIHRRRGRSAAA* 2
Score = 41.4 bits (84), Expect(7) = 2e-057
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2 / -2
Query: 194 *RYKRCICRHKLNHH 238
*RYKRCICRHKL+HH
Sbjct: 296 *RYKRCICRHKLSHH 252
Score = 36.8 bits (74), Expect(5) = 9e-050
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +1
Query: 237 W*LSLWRQMHLLYR* 193
W LSLWRQMHLLYR*
Sbjct: 253 WWLSLWRQMHLLYR* 297
Score = 30.4 bits (60), Expect(5) = 9e-050
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / +2
Query: 90 CLVGYLEFN*NH 55
CLV YLEFN*NH
Sbjct: 377 CLVAYLEFN*NH 412
Score = 29.9 bits (59), Expect(4) = 1e-038
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 244 KMMVIEFVATNASLVSL 194
K +V EFVATNASLVSL
Sbjct: 246 K*VVAEFVATNASLVSL 296
Score = 29.0 bits (57), Expect(7) = 2e-057
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 156 HTEVRTKFTAKTLS 197
HTEVR KFT KTL+
Sbjct: 333 HTEVRIKFTTKTLA 292
Score = 28.6 bits (56), Expect(4) = 1e-038
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2 / +1
Query: 97 YFMSCWLPGI*LKPSL 50
+F+SC L GI*LKPS+
Sbjct: 370 FFLSCRLSGI*LKPSV 417
Score = 28.1 bits (55), Expect(5) = 3e-021
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / -3
Query: 195 SDTRDAFVATN 227
SDTRDAFVATN
Sbjct: 295 SDTRDAFVATN 263
Score = 27.6 bits (54), Expect(5) = 3e-021
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / -1
Query: 297 QVPQKLRVHP 326
QVPQKLRVHP
Sbjct: 192 QVPQKLRVHP 163
Score = 27.2 bits (53), Expect(7) = 2e-057
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +2 / -1
Query: 53 *WF*LNSR*PTRHK 94
*WF*LNSR* TR K
Sbjct: 414 *WF*LNSR*ATRQK 373
Score = 26.3 bits (51), Expect(5) = 9e-050
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 185 SCELSSHFCV 156
SCEL+SHFC+
Sbjct: 304 SCELNSHFCM 333
Score = 25.8 bits (50), Expect(5) = 3e-021
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3 / -2
Query: 51 SDGFN*IPGNQQDIK 95
+DGFN*IP +QD K
Sbjct: 416 TDGFN*IPDRRQDKK 372
Score = 23.5 bits (45), Expect(7) = 2e-057
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -3
Query: 92 KIHFGTN*W 118
K HFGTN*W
Sbjct: 373 KNHFGTN*W 347
Score = 22.6 bits (43), Expect(5) = 3e-021
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2 / -3
Query: 152 QSHRSEN*VHS*D 190
+S+RSEN*VH+*+
Sbjct: 337 RSYRSEN*VHN*N 299
Score = 20.8 bits (39), Expect(4) = 1e-038
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1 / +2
Query: 212 CISCIAKSLSCEL 174
CISCIA+ L L
Sbjct: 278 CISCIARVLVVNL 316
Score = 20.8 bits (39), Expect(7) = 2e-057
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +2 / -1
Query: 119 ISFDHTQV 142
ISFDHT+V
Sbjct: 345 ISFDHTEV 322
Score = 19.9 bits (37), Expect(7) = 2e-057
Identities = 6/10 (60%), Positives = 6/10 (60%)
Frame = +2 / -3
Query: 239 HLTPRTQPRH 268
H TP QP H
Sbjct: 250 HFTPLPQPHH 221
Score = 18.5 bits (34), Expect(5) = 9e-050
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3 / +3
Query: 126 KEIHQLVPK 100
+ HQLVPK
Sbjct: 339 RRYHQLVPK 365
>gb|AI724675.1|AI724675 RHIZ1_11_F01.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 472
Score = 155 bits (333), Expect(5) = 6e-057
Identities = 62/68 (91%), Positives = 63/68 (92%)
Frame = +1 / -2
Query: 268 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQNPSRYC 447
LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCAL DWLCAVWFFDLAI NPS C
Sbjct: 237 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCSC 58
Query: 448 S*SPATEQ 471
S*SPA E+
Sbjct: 57 S*SPAWER 34
Score = 150 bits (323), Expect(5) = 1e-055
Identities = 66/72 (91%), Positives = 67/72 (93%)
Frame = -3 / +1
Query: 456 *LGAVARGILDGQVEEPHGA*PIVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQ 277
*LGA ARGI DGQVEEPHGA*P+VQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQ
Sbjct: 49 *LGAGARGIRDGQVEEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQ 228
Query: 276 QEEWRG*VRGVR 241
QEE G* RGVR
Sbjct: 229 QEER*G*GRGVR 264
Score = 135 bits (289), Expect(4) = 9e-042
Identities = 56/61 (91%), Positives = 58/61 (95%)
Frame = -1 / +2
Query: 467 SVAGD*EQ*REGFWMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYS 288
S AGD*EQ +EGF MAKSKNHTAHNQS+KAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYS
Sbjct: 38 SHAGD*EQEQEGFGMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYS 217
Query: 287 R 285
R
Sbjct: 218 R 220
Score = 62.9 bits (131), Expect(5) = 3e-024
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +2 / -3
Query: 380 P*TIGYAPCGSSTWPSRIPLATAPSHQQQS 469
P T GYAPCGSSTWPSRIPLA APSH++ S
Sbjct: 125 PCTTGYAPCGSSTWPSRIPLAPAPSHRRGS 36
Score = 49.2 bits (101), Expect(5) = 1e-055
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -1 / +3
Query: 140 LVYDQRRSISWYRSVFYVLLVTWNLIKTITCIL 42
L+YDQRR ISWY SVF VLL WN +K +L
Sbjct: 339 LLYDQRRPISWYHSVFSVLLPIWN*LKPSVVLL 437
Score = 45.1 bits (92), Expect(5) = 6e-057
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2 / -2
Query: 65 LNSR*PTRHKIHFGTN*WISFDHTQV 142
+NSR* TR K H+ TN*W+ FDHT+V
Sbjct: 414 INSR*ATRPKKHYDTN*WVFFDHTEV 337
Score = 39.6 bits (80), Expect(4) = 9e-042
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -2 / +1
Query: 136 CMIKGDPSVGTEVYFMSCWLPGI 68
CMIK DPSVG V+F SC L GI
Sbjct: 343 CMIKEDPSVGIIVFFRSCCLSGI 411
Score = 38.2 bits (77), Expect(5) = 3e-024
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = +3 / -3
Query: 69 IPGNQQDIKYTSVPTDGSPLIIHK 140
IP QQD K T +PTDGS LII K
Sbjct: 410 IPDRQQDRKNTMIPTDGSSLIIQK 339
Score = 33.6 bits (67), Expect(5) = 1e-055
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -3 / +2
Query: 45 PFENWAIDVSFSVL 4
PF NWA+DVSFSVL
Sbjct: 431 PFANWALDVSFSVL 472
Score = 33.1 bits (66), Expect(5) = 6e-057
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2 / -2
Query: 206 RCICRHKLNHH 238
RCICRHKL+HH
Sbjct: 300 RCICRHKLSHH 268
Score = 30.9 bits (61), Expect(5) = 6e-057
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2 / -2
Query: 5 RTENDTSIAQFSKG 46
RTENDTS AQF+KG
Sbjct: 471 RTENDTSSAQFAKG 430
Score = 29.9 bits (59), Expect(5) = 3e-024
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -3
Query: 6 EQKTTHQLPNSQKD 47
EQK TH +PNSQKD
Sbjct: 470 EQKMTHLVPNSQKD 429
Score = 29.5 bits (58), Expect(5) = 6e-057
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 156 HTEVRTKFTAKTLS 197
HTEVR KFT KTL+
Sbjct: 348 HTEVRNKFTTKTLA 307
Score = 29.0 bits (57), Expect(5) = 1e-055
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3 / +2
Query: 237 W*LSLWRQMHL 205
W LSLWRQMHL
Sbjct: 269 WWLSLWRQMHL 301
Score = 27.6 bits (54), Expect(5) = 3e-024
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / -1
Query: 297 QVPQKLRVHP 326
QVPQKLRVHP
Sbjct: 208 QVPQKLRVHP 179
Score = 27.2 bits (53), Expect(4) = 9e-042
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 49 VSF*ELGN*CVVFCS 5
+SF ELG CV+FCS
Sbjct: 427 LSFCELGTRCVIFCS 471
Score = 26.7 bits (52), Expect(5) = 1e-055
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 191 SLSCELSSHFCV 156
S SCEL SHFC+
Sbjct: 313 SFSCELISHFCM 348
Score = 24.4 bits (47), Expect(4) = 9e-042
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2 / +1
Query: 244 KMMVIEFVATNASL 203
+ +V EFVATNASL
Sbjct: 262 RWVVAEFVATNASL 303
Score = 22.6 bits (43), Expect(5) = 3e-024
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 154 VTQK*ELSSQLRL 192
+ QK*E+SSQL+L
Sbjct: 350 IIQK*EISSQLKL 312
>gb|AW287208.2|AW287208 LG1_267_H06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 429
Score = 159 bits (342), Expect(6) = 2e-055
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = +1 / -2
Query: 268 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQNPSRYC 447
LFLLPFLEYLKFLRN GSIPLVEVWRWRLGFLMPFLCAL DWLCAVWFFDLAI NPS C
Sbjct: 227 LFLLPFLEYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCSC 48
Query: 448 S*SPATEQISGGV 486
+ SPA+ Q+SGGV
Sbjct: 47 TYSPASGQVSGGV 9
Score = 155 bits (333), Expect(5) = 4e-050
Identities = 69/85 (81%), Positives = 73/85 (85%)
Frame = -3 / +3
Query: 492 THHAATDLLCCW*LGAVARGILDGQVEEPHGA*PIVQGAQERHQEAQAPPPDLHQGDGPE 313
T HAA DL *+GA ARGI DGQV+EPHGA*P+VQGAQERHQEAQAPPPDLHQGDGP
Sbjct: 3 TRHAAADLPRRR*IGAGARGIRDGQVKEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGP* 182
Query: 312 VSEELEVLKEGQQEEWRG*VRGVR* 238
VSEELEVLKEGQQEEW * RGV+*
Sbjct: 183 VSEELEVLKEGQQEEW*A*GRGVK* 257
Score = 132 bits (282), Expect(4) = 2e-038
Identities = 54/62 (87%), Positives = 57/62 (91%)
Frame = -1 / +1
Query: 470 CSVAGD*EQ*REGFWMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY 291
C AG+* Q +EGF MAKSKNHTAHNQS+KAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY
Sbjct: 25 CPDAGE*VQEQEGFGMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY 204
Query: 290 SR 285
SR
Sbjct: 205 SR 210
Score = 64.8 bits (135), Expect(5) = 1e-021
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +2 / -3
Query: 380 P*TIGYAPCGSSTWPSRIPLATAPSHQQQSRSVAA 484
P T GYAPCGS TWPSRIPLA AP H+++ RS AA
Sbjct: 115 PCTTGYAPCGSLTWPSRIPLAPAPIHRRRGRSAAA 11
Score = 41.4 bits (84), Expect(6) = 2e-055
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2 / -2
Query: 194 *RYKRCICRHKLNHH 238
*RYKRCICRHKL+HH
Sbjct: 302 *RYKRCICRHKLSHH 258
Score = 36.8 bits (74), Expect(5) = 4e-050
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +1
Query: 237 W*LSLWRQMHLLYR* 193
W LSLWRQMHLLYR*
Sbjct: 259 WWLSLWRQMHLLYR* 303
Score = 32.2 bits (64), Expect(5) = 4e-050
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 90 CLVGYLEFN*NHHL 49
CLV YLEFN*NH L
Sbjct: 383 CLVAYLEFN*NHQL 424
Score = 30.9 bits (61), Expect(4) = 2e-038
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / +3
Query: 95 FYVLLVTWNLIKTITC 48
F+VL WNLIKTI+C
Sbjct: 378 FFVLSPIWNLIKTISC 425
Score = 29.9 bits (59), Expect(4) = 2e-038
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 244 KMMVIEFVATNASLVSL 194
K +V EFVATNASLVSL
Sbjct: 252 K*VVAEFVATNASLVSL 302
Score = 29.0 bits (57), Expect(6) = 2e-055
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 156 HTEVRTKFTAKTLS 197
HTEVR KFT KTL+
Sbjct: 339 HTEVRIKFTTKTLA 298
Score = 28.1 bits (55), Expect(5) = 1e-021
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / -3
Query: 195 SDTRDAFVATN 227
SDTRDAFVATN
Sbjct: 301 SDTRDAFVATN 269
Score = 28.1 bits (55), Expect(6) = 2e-055
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -2
Query: 48 TSDGFN*IPGNQQDIK 95
T+DGFN*IP +QD K
Sbjct: 425 TTDGFN*IPDRRQDKK 378
Score = 27.6 bits (54), Expect(5) = 1e-021
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / -1
Query: 297 QVPQKLRVHP 326
QVPQKLRVHP
Sbjct: 198 QVPQKLRVHP 169
Score = 27.2 bits (53), Expect(5) = 1e-021
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +2 / -1
Query: 53 *WF*LNSR*PTRHK 94
*WF*LNSR* TR K
Sbjct: 420 *WF*LNSR*ATRQK 379
Score = 26.3 bits (51), Expect(5) = 4e-050
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 185 SCELSSHFCV 156
SCEL+SHFC+
Sbjct: 310 SCELNSHFCM 339
Score = 23.5 bits (45), Expect(6) = 2e-055
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -3
Query: 92 KIHFGTN*W 118
K HFGTN*W
Sbjct: 379 KNHFGTN*W 353
Score = 22.6 bits (43), Expect(5) = 1e-021
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2 / -3
Query: 152 QSHRSEN*VHS*D 190
+S+RSEN*VH+*+
Sbjct: 343 RSYRSEN*VHN*N 305
Score = 20.8 bits (39), Expect(4) = 2e-038
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1 / +2
Query: 212 CISCIAKSLSCEL 174
CISCIA+ L L
Sbjct: 284 CISCIARVLVVNL 322
Score = 20.8 bits (39), Expect(6) = 2e-055
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +2 / -1
Query: 119 ISFDHTQV 142
ISFDHT+V
Sbjct: 351 ISFDHTEV 328
Score = 18.5 bits (34), Expect(5) = 4e-050
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3 / +3
Query: 126 KEIHQLVPK 100
+ HQLVPK
Sbjct: 345 RRYHQLVPK 371
>gb|CF760799.1|CF760799 DSAF1_66_H03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_H03_A011 5', mRNA sequence
Length = 448
Score = 160 bits (345), Expect(5) = 2e-054
Identities = 64/73 (87%), Positives = 66/73 (90%)
Frame = +1 / -3
Query: 268 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQNPSRYC 447
LFLLPFLEYLKFLRN GSIPLVEVWRWRLGFLMPFLCAL DWLCAVWFFDLAI NPS C
Sbjct: 221 LFLLPFLEYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCSC 42
Query: 448 S*SPATEQISGGV 486
S SPA+ Q+SGGV
Sbjct: 41 SYSPASGQVSGGV 3
Score = 155 bits (334), Expect(4) = 4e-049
Identities = 69/83 (83%), Positives = 73/83 (87%)
Frame = -3 / +3
Query: 486 HAATDLLCCW*LGAVARGILDGQVEEPHGA*PIVQGAQERHQEAQAPPPDLHQGDGPEVS 307
HAA DL *+GA ARGI DGQV+EPHGA*P+VQGAQERHQEAQAPPPDLHQGDGP VS
Sbjct: 3 HAAADLPRRR*IGAGARGIRDGQVKEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGP*VS 182
Query: 306 EELEVLKEGQQEEWRG*VRGVR* 238
EELEVLKEGQQEEW G* RGV+*
Sbjct: 183 EELEVLKEGQQEEW*G*GRGVK* 251
Score = 135 bits (289), Expect(3) = 8e-038
Identities = 55/62 (88%), Positives = 58/62 (93%)
Frame = -1 / +1
Query: 470 CSVAGD*EQ*REGFWMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY 291
C AG+*EQ +EGF MAKSKNHTAHNQS+KAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY
Sbjct: 19 CPDAGE*EQEQEGFGMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY 198
Query: 290 SR 285
SR
Sbjct: 199 SR 204
Score = 65.2 bits (136), Expect(5) = 4e-022
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +2 / -1
Query: 380 P*TIGYAPCGSSTWPSRIPLATAPSHQQQSRSVAA* 487
P T GYAPCGS TWPSRIPLA AP H+++ RS AA*
Sbjct: 109 PCTTGYAPCGSLTWPSRIPLAPAPIHRRRGRSAAA* 2
Score = 41.4 bits (84), Expect(5) = 2e-054
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2 / -3
Query: 194 *RYKRCICRHKLNHH 238
*RYKRCICRHKL+HH
Sbjct: 296 *RYKRCICRHKLSHH 252
Score = 36.8 bits (74), Expect(4) = 4e-049
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +1
Query: 237 W*LSLWRQMHLLYR* 193
W LSLWRQMHLLYR*
Sbjct: 253 WWLSLWRQMHLLYR* 297
Score = 32.2 bits (64), Expect(4) = 4e-049
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / +2
Query: 90 CLVGYLEFN*NHHL 49
CLV YLEFN*NH L
Sbjct: 377 CLVAYLEFN*NHQL 418
Score = 30.9 bits (61), Expect(3) = 8e-038
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / +3
Query: 95 FYVLLVTWNLIKTITC 48
F+VL WNLIKTI+C
Sbjct: 372 FFVLSPIWNLIKTISC 419
Score = 29.9 bits (59), Expect(3) = 8e-038
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 244 KMMVIEFVATNASLVSL 194
K +V EFVATNASLVSL
Sbjct: 246 K*VVAEFVATNASLVSL 296
Score = 29.9 bits (59), Expect(5) = 4e-022
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3 / -3
Query: 39 QKDTSDGFN*IPGNQQDIK 95
+K T+DGFN*IP +QD K
Sbjct: 428 RKRTTDGFN*IPDRRQDKK 372
Score = 29.9 bits (59), Expect(5) = 2e-054
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2 / -2
Query: 35 FSKGYK*WF*LNSR*PTRHK 94
FS+ *WF*LNSR* TR K
Sbjct: 432 FSQKDN*WF*LNSR*ATRQK 373
Score = 29.0 bits (57), Expect(5) = 2e-054
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 156 HTEVRTKFTAKTLS 197
HTEVR KFT KTL+
Sbjct: 333 HTEVRIKFTTKTLA 292
Score = 28.1 bits (55), Expect(5) = 4e-022
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / -1
Query: 195 SDTRDAFVATN 227
SDTRDAFVATN
Sbjct: 295 SDTRDAFVATN 263
Score = 27.6 bits (54), Expect(5) = 4e-022
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3 / -2
Query: 297 QVPQKLRVHP 326
QVPQKLRVHP
Sbjct: 192 QVPQKLRVHP 163
Score = 26.3 bits (51), Expect(4) = 4e-049
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -1 / +1
Query: 185 SCELSSHFCV 156
SCEL+SHFC+
Sbjct: 304 SCELNSHFCM 333
Score = 23.5 bits (45), Expect(5) = 2e-054
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -1
Query: 92 KIHFGTN*W 118
K HFGTN*W
Sbjct: 373 KNHFGTN*W 347
Score = 22.6 bits (43), Expect(5) = 4e-022
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2 / -1
Query: 152 QSHRSEN*VHS*D 190
+S+RSEN*VH+*+
Sbjct: 337 RSYRSEN*VHN*N 299
>gb|BE352866.1|BE352866 LG1_267_H06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 419
Score = 155 bits (332), Expect(6) = 3e-054
Identities = 61/71 (85%), Positives = 64/71 (90%)
Frame = +1 / -3
Query: 268 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQNPSRYC 447
LFLLPFLEYLKFLRN GSIPLVEVWRWRLGFLMPFLCAL DWLCAVWFFDLAI NPS C
Sbjct: 213 LFLLPFLEYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCSC 34
Query: 448 S*SPATEQISG 480
+ SPA+ Q+SG
Sbjct: 33 TYSPASGQVSG 1
Score = 147 bits (316), Expect(5) = 6e-048
Identities = 66/81 (81%), Positives = 70/81 (86%)
Frame = -3 / +1
Query: 480 ATDLLCCW*LGAVARGILDGQVEEPHGA*PIVQGAQERHQEAQAPPPDLHQGDGPEVSEE 301
A DL *+GA ARGI DGQV+EPHGA*P+VQGAQERHQEAQAPPPDLHQGDGP VSEE
Sbjct: 1 AADLPRRR*IGAGARGIRDGQVKEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGP*VSEE 180
Query: 300 LEVLKEGQQEEWRG*VRGVR* 238
LEVLKEGQQEEW * RGV+*
Sbjct: 181 LEVLKEGQQEEW*A*GRGVK* 243
Score = 132 bits (282), Expect(4) = 6e-038
Identities = 54/62 (87%), Positives = 57/62 (91%)
Frame = -1 / +2
Query: 470 CSVAGD*EQ*REGFWMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY 291
C AG+* Q +EGF MAKSKNHTAHNQS+KAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY
Sbjct: 11 CPDAGE*VQEQEGFGMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRY 190
Query: 290 SR 285
SR
Sbjct: 191 SR 196
Score = 41.4 bits (84), Expect(6) = 3e-054
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2 / -3
Query: 194 *RYKRCICRHKLNHH 238
*RYKRCICRHKL+HH
Sbjct: 288 *RYKRCICRHKLSHH 244
Score = 36.8 bits (74), Expect(5) = 6e-048
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / +2
Query: 237 W*LSLWRQMHLLYR* 193
W LSLWRQMHLLYR*
Sbjct: 245 WWLSLWRQMHLLYR* 289
Score = 32.2 bits (64), Expect(5) = 6e-048
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / +3
Query: 90 CLVGYLEFN*NHHL 49
CLV YLEFN*NH L
Sbjct: 369 CLVAYLEFN*NHQL 410
Score = 31.3 bits (62), Expect(4) = 6e-038
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1 / +1
Query: 95 FYVLLVTWNLIKTITCIL 42
F+VL WNLIKTI+C L
Sbjct: 364 FFVLSPIWNLIKTISCPL 417
Score = 29.9 bits (59), Expect(4) = 6e-038
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2 / +1
Query: 244 KMMVIEFVATNASLVSL 194
K +V EFVATNASLVSL
Sbjct: 238 K*VVAEFVATNASLVSL 288
Score = 29.0 bits (57), Expect(6) = 3e-054
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 156 HTEVRTKFTAKTLS 197
HTEVR KFT KTL+
Sbjct: 325 HTEVRIKFTTKTLA 284
Score = 28.1 bits (55), Expect(6) = 3e-054
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / -3
Query: 48 TSDGFN*IPGNQQDIK 95
T+DGFN*IP +QD K
Sbjct: 411 TTDGFN*IPDRRQDKK 364
Score = 26.3 bits (51), Expect(5) = 6e-048
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -1 / +2
Query: 185 SCELSSHFCV 156
SCEL+SHFC+
Sbjct: 296 SCELNSHFCM 325
Score = 23.5 bits (45), Expect(6) = 3e-054
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -1
Query: 92 KIHFGTN*W 118
K HFGTN*W
Sbjct: 365 KNHFGTN*W 339
Score = 20.8 bits (39), Expect(6) = 3e-054
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +2 / -2
Query: 119 ISFDHTQV 142
ISFDHT+V
Sbjct: 337 ISFDHTEV 314
Score = 18.5 bits (34), Expect(5) = 6e-048
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3 / +1
Query: 126 KEIHQLVPK 100
+ HQLVPK
Sbjct: 331 RRYHQLVPK 357
Score = 18.5 bits (34), Expect(4) = 6e-038
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3 / +1
Query: 186 *L*T*FSLLCD 154
*L*T*FSLL D
Sbjct: 295 *L*T*FSLLYD 327
>gb|BQ655932.1|BQ655932 pRC0111 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0111, mRNA sequence
Length = 371
Score = 138 bits (297), Expect(5) = 1e-045
Identities = 58/64 (90%), Positives = 61/64 (95%)
Frame = -3 / -1
Query: 429 LDGQVEEPHGA*PIVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQQEEWRG*VR 250
LDGQV+EPHGA*P+VQGAQERHQEAQAPPPDLHQGDGP VSEELEVLKEGQQEEW G* R
Sbjct: 365 LDGQVKEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGP*VSEELEVLKEGQQEEW*G*GR 186
Query: 249 GVR* 238
GV+*
Sbjct: 185 GVK* 174
Score = 134 bits (288), Expect(7) = 2e-050
Identities = 52/54 (96%), Positives = 52/54 (96%)
Frame = +1 / +3
Query: 268 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQ 429
LFLLPFLEYLKFLRN GSIPLVEVWRWRLGFLMPFLCAL DWLCAVWFFDLAIQ
Sbjct: 204 LFLLPFLEYLKFLRNLGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIQ 365
Score = 122 bits (260), Expect(4) = 5e-035
Identities = 47/48 (97%), Positives = 48/48 (100%)
Frame = -1 / -2
Query: 428 WMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
WMAKSKNHTAHNQS+KAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 364 WMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 221
Score = 41.4 bits (84), Expect(7) = 2e-050
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2 / +3
Query: 194 *RYKRCICRHKLNHH 238
*RYKRCICRHKL+HH
Sbjct: 129 *RYKRCICRHKLSHH 173
Score = 36.8 bits (74), Expect(5) = 1e-045
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / -2
Query: 237 W*LSLWRQMHLLYR* 193
W LSLWRQMHLLYR*
Sbjct: 172 WWLSLWRQMHLLYR* 128
Score = 32.2 bits (64), Expect(5) = 1e-045
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / -3
Query: 90 CLVGYLEFN*NHHL 49
CLV YLEFN*NH L
Sbjct: 48 CLVAYLEFN*NHQL 7
Score = 30.9 bits (61), Expect(4) = 5e-035
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1 / -1
Query: 95 FYVLLVTWNLIKTITC 48
F+VL WNLIKTI+C
Sbjct: 53 FFVLSPIWNLIKTISC 6
Score = 29.9 bits (59), Expect(4) = 5e-035
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2 / -1
Query: 244 KMMVIEFVATNASLVSL 194
K +V EFVATNASLVSL
Sbjct: 179 K*VVAEFVATNASLVSL 129
Score = 29.0 bits (57), Expect(7) = 2e-050
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 156 HTEVRTKFTAKTLS 197
HTEVR KFT KTL+
Sbjct: 92 HTEVRIKFTTKTLA 133
Score = 28.1 bits (55), Expect(7) = 2e-050
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / +3
Query: 48 TSDGFN*IPGNQQDIK 95
T+DGFN*IP +QD K
Sbjct: 6 TTDGFN*IPDRRQDKK 53
Score = 26.3 bits (51), Expect(5) = 1e-045
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -1 / -2
Query: 185 SCELSSHFCV 156
SCEL+SHFC+
Sbjct: 121 SCELNSHFCM 92
Score = 23.5 bits (45), Expect(7) = 2e-050
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / +1
Query: 92 KIHFGTN*W 118
K HFGTN*W
Sbjct: 52 KNHFGTN*W 78
Score = 20.8 bits (39), Expect(7) = 2e-050
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +2 / +2
Query: 119 ISFDHTQV 142
ISFDHT+V
Sbjct: 80 ISFDHTEV 103
Score = 19.9 bits (37), Expect(7) = 2e-050
Identities = 6/10 (60%), Positives = 6/10 (60%)
Frame = +2 / +1
Query: 239 HLTPRTQPRH 268
H TP QP H
Sbjct: 175 HFTPLPQPHH 204
Score = 18.5 bits (34), Expect(5) = 1e-045
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3 / -1
Query: 126 KEIHQLVPK 100
+ HQLVPK
Sbjct: 86 RRYHQLVPK 60
Score = 18.5 bits (34), Expect(4) = 5e-035
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3 / -1
Query: 186 *L*T*FSLLCD 154
*L*T*FSLL D
Sbjct: 122 *L*T*FSLLYD 90
>gb|BG049368.1|BG049368 OV1_19_B01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 352
Score = 155 bits (334), Expect(4) = 6e-047
Identities = 64/80 (80%), Positives = 67/80 (83%)
Frame = +1 / -3
Query: 268 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQNPSRYC 447
LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCAL DWLCAVWFFDLAI NPS C
Sbjct: 242 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCSC 63
Query: 448 S*SPATEQISGGVMSVRVPR 507
S*SPA+ + + R PR
Sbjct: 62 S*SPASGRGGRSAAA*REPR 3
Score = 155 bits (332), Expect(3) = 4e-044
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = -3 / +3
Query: 456 *LGAVARGILDGQVEEPHGA*PIVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQ 277
*LGA ARGI +GQVEEPHGA*P+VQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQ
Sbjct: 54 *LGAGARGIRNGQVEEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQ 233
Query: 276 QEEWRG*VRGVR 241
QEEW G* RGVR
Sbjct: 234 QEEW*G*GRGVR 269
Score = 134 bits (288), Expect(3) = 1e-034
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = -1 / +1
Query: 461 AGD*EQ*REGFWMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
AGD*EQ +EGF MAKSKNHTAHNQS+KAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 49 AGD*EQEQEGFGMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 225
Score = 38.6 bits (78), Expect(4) = 6e-047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2 / -3
Query: 200 YKRCICRHKLNHH 238
YKRCICRHKL+HH
Sbjct: 311 YKRCICRHKLSHH 273
Score = 34.5 bits (69), Expect(3) = 4e-044
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / +1
Query: 237 W*LSLWRQMHLLYR* 193
W LSLWRQMHLLY *
Sbjct: 274 WWLSLWRQMHLLYH* 318
Score = 29.9 bits (59), Expect(3) = 1e-034
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 244 KMMVIEFVATNASLVSL 194
+ +V EFVATNASLVSL
Sbjct: 267 RWVVAEFVATNASLVSL 317
Score = 26.3 bits (51), Expect(3) = 4e-044
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1 / +1
Query: 191 SLSCELSSHFC 159
S SCEL SHFC
Sbjct: 319 SFSCELISHFC 351
Score = 25.4 bits (49), Expect(4) = 6e-047
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / -2
Query: 159 TEVRTKFTAKTL 194
TEVR KFT KTL
Sbjct: 351 TEVRNKFTTKTL 316
Score = 21.7 bits (41), Expect(4) = 6e-047
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / -1
Query: 239 HLTPRTQPRH 268
HLTP QP H
Sbjct: 271 HLTPLPQPHH 242
Score = 18.9 bits (35), Expect(3) = 1e-034
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1 / +2
Query: 212 CISCIAKSLSCEL 174
CISCI + L L
Sbjct: 299 CISCITRVLVVNL 337
>gb|BG240197.1|BG240197 OV1_19_B01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 412
Score = 155 bits (332), Expect(4) = 1e-045
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = -3 / +3
Query: 456 *LGAVARGILDGQVEEPHGA*PIVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQ 277
*LGA ARGI +GQVEEPHGA*P+VQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQ
Sbjct: 54 *LGAGARGIRNGQVEEPHGA*PVVQGAQERHQEAQAPPPDLHQGDGPEVSEELEVLKEGQ 233
Query: 276 QEEWRG*VRGVR 241
QEEW G* RGVR
Sbjct: 234 QEEW*G*GRGVR 269
Score = 154 bits (330), Expect(4) = 4e-046
Identities = 63/80 (78%), Positives = 66/80 (82%)
Frame = +1 / -3
Query: 268 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQNPSRYC 447
LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCAL DWLC VWFFDLAI NPS C
Sbjct: 242 LFLLPFLEYLKFLRNFGSIPLVEVWRWRLGFLMPFLCALYDWLCTVWFFDLAIPNPSCSC 63
Query: 448 S*SPATEQISGGVMSVRVPR 507
S*SPA+ + + R PR
Sbjct: 62 S*SPASGRGGRSAAA*REPR 3
Score = 133 bits (284), Expect(4) = 2e-034
Identities = 54/59 (91%), Positives = 56/59 (94%)
Frame = -1 / +1
Query: 461 AGD*EQ*REGFWMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 285
AGD*EQ +EGF MAKSKNHT HNQS+KAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR
Sbjct: 49 AGD*EQEQEGFGMAKSKNHTVHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 225
Score = 38.6 bits (78), Expect(4) = 4e-046
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2 / -3
Query: 200 YKRCICRHKLNHH 238
YKRCICRHKL+HH
Sbjct: 311 YKRCICRHKLSHH 273
Score = 34.5 bits (69), Expect(4) = 1e-045
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / +1
Query: 237 W*LSLWRQMHLLYR* 193
W LSLWRQMHLLY *
Sbjct: 274 WWLSLWRQMHLLYH* 318
Score = 29.9 bits (59), Expect(4) = 2e-034
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 244 KMMVIEFVATNASLVSL 194
+ +V EFVATNASLVSL
Sbjct: 267 RWVVAEFVATNASLVSL 317
Score = 27.6 bits (54), Expect(4) = 1e-045
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / +1
Query: 191 SLSCELSSHFCV 156
S SCEL SHFC+
Sbjct: 319 SFSCELISHFCI 354
Score = 25.4 bits (49), Expect(4) = 4e-046
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3 / -2
Query: 159 TEVRTKFTAKTL 194
TEVR KFT KTL
Sbjct: 351 TEVRNKFTTKTL 316
Score = 21.7 bits (41), Expect(4) = 4e-046
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2 / -1
Query: 239 HLTPRTQPRH 268
HLTP QP H
Sbjct: 271 HLTPLPQPHH 242
Score = 20.8 bits (39), Expect(4) = 1e-045
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -1 / +2
Query: 113 SWYRSVFY 90
SWY SVF+
Sbjct: 371 SWYNSVFF 394
Score = 18.9 bits (35), Expect(4) = 2e-034
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1 / +2
Query: 212 CISCIAKSLSCEL 174
CISCI + L L
Sbjct: 299 CISCITRVLVVNL 337
Score = 17.6 bits (32), Expect(4) = 2e-034
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -2 / +3
Query: 118 PSVGTEVYF 92
P VGT V+F
Sbjct: 366 PKVGTIVFF 392
>gb|CW336100.1|CW336100 104_835_11483410_116_36097_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483410, DNA
sequence
Length = 673
Score = 109 bits (232), Expect(2) = 3e-026
Identities = 42/46 (91%), Positives = 42/46 (91%)
Frame = +1 / -1
Query: 325 PLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQNPSRYCS*SPA 462
PLVEVWRWRLGFLMPFLCAL DWLCAVWFFDLAI NPS CS*SPA
Sbjct: 487 PLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCSCS*SPA 350
Score = 105 bits (223), Expect(2) = 2e-024
Identities = 43/51 (84%), Positives = 46/51 (90%)
Frame = -1 / +3
Query: 461 AGD*EQ*REGFWMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKF 309
AGD*EQ +EGF MAKSKNHTAHNQS+KAHKNGIKKPKRHRQTSTKG+ F
Sbjct: 351 AGD*EQEQEGFGMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGVRASF 503
Score = 97.3 bits (206), Expect(2) = 9e-021
Identities = 40/44 (90%), Positives = 42/44 (95%)
Frame = -3 / +2
Query: 456 *LGAVARGILDGQVEEPHGA*PIVQGAQERHQEAQAPPPDLHQG 325
*LGA ARGI +GQVEEPHGA*P+VQGAQERHQEAQAPPPDLHQG
Sbjct: 356 *LGAGARGIRNGQVEEPHGA*PVVQGAQERHQEAQAPPPDLHQG 487
Score = 29.9 bits (59), Expect(2) = 3e-026
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1 / -3
Query: 460 ATEQISGGVMSVRVPRAATLLG*LYRD 540
A Q+SGGV VRV A L G LY D
Sbjct: 248 ARGQVSGGVKRVRVSGATVLRGWLYID 168
Score = 28.1 bits (55), Expect(2) = 2e-024
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -2 / +2
Query: 538 LYKVSLKASPL*EP*HSSRRH*SA 467
LYK SL+A L +P* SSRR * A
Sbjct: 170 LYKASLEAPSLPKP*LSSRRR*PA 241
Score = 23.5 bits (45), Expect(2) = 9e-021
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3 / +3
Query: 543 LVSIXXXXXXXXXRNPNTHHAATDL 469
LV I RNPN+ HAA DL
Sbjct: 165 LVYIKPASKHRRSRNPNSLHAAADL 239
>gb|CW336101.1|CW336101 104_835_11483410_148_36101_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11483410, DNA
sequence
Length = 548
Score = 109 bits (232), Expect = 4e-023
Identities = 42/46 (91%), Positives = 42/46 (91%)
Frame = +1 / +3
Query: 325 PLVEVWRWRLGFLMPFLCALNDWLCAVWFFDLAIQNPSRYCS*SPA 462
PLVEVWRWRLGFLMPFLCAL DWLCAVWFFDLAI NPS CS*SPA
Sbjct: 282 PLVEVWRWRLGFLMPFLCALYDWLCAVWFFDLAIPNPSCSCS*SPA 419
Score = 105 bits (223), Expect = 7e-022
Identities = 43/51 (84%), Positives = 46/51 (90%)
Frame = -1 / -2
Query: 461 AGD*EQ*REGFWMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKF 309
AGD*EQ +EGF MAKSKNHTAHNQS+KAHKNGIKKPKRHRQTSTKG+ F
Sbjct: 418 AGD*EQEQEGFGMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGVRASF 266
>gb|CW170924.1|CW170924 104_581_11155469_148_36522_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155469, DNA
sequence
Length = 744
Score = 52.8 bits (109), Expect(5) = 1e-021
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -3 / -2
Query: 324 DGPEVSEELEVLKEGQQEEWRG*VRGVR* 238
DGP VSEELEVLKEGQQEEW * RGV+*
Sbjct: 566 DGP*VSEELEVLKEGQQEEW*A*GRGVK* 480
Score = 44.6 bits (91), Expect(6) = 5e-023
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1 / +3
Query: 268 LFLLPFLEYLKFLRNFGSI 324
LFLLPFLEYLKFLRN GSI
Sbjct: 510 LFLLPFLEYLKFLRNLGSI 566
Score = 41.4 bits (84), Expect(6) = 5e-023
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2 / +3
Query: 194 *RYKRCICRHKLNHH 238
*RYKRCICRHKL+HH
Sbjct: 435 *RYKRCICRHKLSHH 479
Score = 36.8 bits (74), Expect(5) = 1e-021
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3 / -3
Query: 237 W*LSLWRQMHLLYR* 193
W LSLWRQMHLLYR*
Sbjct: 478 WWLSLWRQMHLLYR* 434
Score = 32.2 bits (64), Expect(5) = 1e-021
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -3 / -1
Query: 90 CLVGYLEFN*NHHL 49
CLV YLEFN*NH L
Sbjct: 354 CLVAYLEFN*NHQL 313
Score = 29.0 bits (57), Expect(6) = 5e-023
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +2
Query: 156 HTEVRTKFTAKTLS 197
HTEVR KFT KTL+
Sbjct: 398 HTEVRIKFTTKTLA 439
Score = 28.6 bits (56), Expect(6) = 5e-023
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3 / +3
Query: 33 NSQKDTSDGFN*IPGNQQDIK 95
++ + T+DGFN*IP +QD K
Sbjct: 297 HNSQRTTDGFN*IPDRRQDKK 359
Score = 27.6 bits (54), Expect(6) = 5e-023
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / +2
Query: 5 RTENDTSIAQFSK 43
RTENDTS AQF+K
Sbjct: 272 RTENDTSRAQFAK 310
Score = 26.7 bits (52), Expect(5) = 1e-021
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3 / -1
Query: 57 HHLYPFENWAIDVSFSVL 4
+H F N A+DVSFSVL
Sbjct: 324 NHQLSFANCALDVSFSVL 271
Score = 26.3 bits (51), Expect(5) = 1e-021
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -1 / -3
Query: 185 SCELSSHFCV 156
SCEL+SHFC+
Sbjct: 427 SCELNSHFCM 398
Score = 23.5 bits (45), Expect(6) = 5e-023
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / +1
Query: 92 KIHFGTN*W 118
K HFGTN*W
Sbjct: 358 KNHFGTN*W 384
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 558,924,175
Number of Sequences: 832831
Number of extensions: 6948838
Number of successful extensions: 83690
Number of sequences better than 1.0e-020: 11
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15314753664
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)