TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.593
(1027 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated... 438 e-122
gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorgh... 275 5e-097
gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1... 330 9e-093
gb|BE358815.1|BE358815 DG1_32_F07.b1_A002 Dark Grown 1 (DG1... 316 4e-085
gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation... 144 1e-081
gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorgh... 196 4e-080
gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced ... 196 5e-077
gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorgh... 188 8e-076
gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced ... 196 3e-069
gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkal... 161 2e-068
gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation... 165 9e-067
gb|CW022215.1|CW022215 104_161_10431706_5_30007 Sorghum met... 173 3e-064
gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1... 196 2e-060
gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adap... 144 1e-059
gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stresse... 177 1e-054
gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced ... 177 3e-054
gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkal... 122 2e-053
gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stres... 111 9e-051
gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation... 110 3e-049
gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation... 145 5e-049
gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation... 153 9e-047
gb|BE125178.1|BE125178 DG1_14_A08.b1_A002 Dark Grown 1 (DG1... 183 4e-045
gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced ... 119 4e-044
gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkal... 110 6e-044
gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation... 121 2e-043
gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stres... 145 1e-042
gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorgh... 161 3e-041
gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkal... 139 3e-040
gb|CW276618.1|CW276618 104_750_11405587_148_35398_074 Sorgh... 121 5e-035
gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation... 134 2e-034
gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorgh... 126 8e-034
gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum b... 120 7e-032
gb|CX610007.1|CX610007 ANR1_16_C10.b1_A002 Anaerobic roots ... 81 4e-031
gb|CW206618.1|CW206618 104_635_11187687_148_36965_058 Sorgh... 126 8e-031
gb|CW362042.1|CW362042 fsbb001f030o20k0 Sorghum methylation... 106 4e-030
gb|CF486597.1|CF486597 POL1_38_D07.g1_A002 Pollen Sorghum b... 110 1e-029
gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorgh... 93 1e-028
gb|CN125314.1|CN125314 RHOH1_10_G12.b1_A002 Acid- and alkal... 119 1e-028
gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stress... 74 3e-028
gb|AW922776.1|AW922776 DG1_46_C01.g1_A002 Dark Grown 1 (DG1... 81 4e-028
gb|CX613448.1|CX613448 GABR1_8_E12.b1_A002 GA- or brassinol... 81 4e-028
gb|CW371155.1|CW371155 fsbb001f046h18f0 Sorghum methylation... 125 1e-027
gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorgh... 86 5e-027
gb|BE918012.1|BE918012 OV1_8_G11.g1_A002 Ovary 1 (OV1) Sorg... 74 1e-026
gb|AF402939.1|AF402939 Sorghum halepense chitinase-B gene, ... 74 2e-026
gb|CD223183.1|CD223183 CCC1_26_G01.g1_A007 Callus culture/c... 74 2e-026
gb|CW204755.1|CW204755 104_632_11186715_116_37060_002 Sorgh... 84 4e-026
gb|CN133023.1|CN133023 OX1_9_D11.g1_A002 Oxidatively-stress... 74 8e-026
gb|BE918591.1|BE918591 OV1_8_G11.b1_A002 Ovary 1 (OV1) Sorg... 74 1e-025
gb|CW056944.1|CW056944 104_298_10517953_114_30151 Sorghum m... 81 8e-025
gb|AY047607.1| Sorghum bicolor chitinase-B mRNA, partial cds 76 4e-024
gb|CD225895.1|CD225895 CCC1_42_B03.b1_A007 Callus culture/c... 76 4e-024
gb|CD222353.1|CD222353 CCC1_21_F09.b1_A007 Callus culture/c... 76 4e-024
gb|CD221995.1|CD221995 CCC1_1_C09.b1_A007 Callus culture/ce... 76 4e-024
gb|CW405242.1|CW405242 fsbb001f097l13f0 Sorghum methylation... 70 4e-024
gb|BE363714.1|BE363714 WS1_69_C06.g2_A002 Water-stressed 1 ... 76 6e-024
gb|CD226631.1|CD226631 CCC1_47_H05.b1_A007 Callus culture/c... 76 6e-024
gb|AW680953.1|AW680953 WS1_9_A06.b1_A002 Water-stressed 1 (... 76 6e-024
gb|AY047608.1| Sorghum bicolor chitinase-B1 mRNA, complete cds 76 7e-024
gb|BE594394.1|BE594394 PI1_32_H10.b2_A002 Pathogen induced ... 103 7e-024
gb|CX610094.1|CX610094 ANR1_16_C10.g1_A002 Anaerobic roots ... 82 1e-023
gb|CX613534.1|CX613534 GABR1_8_E12.g1_A002 GA- or brassinol... 81 3e-023
gb|CX616381.1|CX616381 GABR1_27_C09.g1_A002 GA- or brassino... 81 3e-023
gb|CW039394.1|CW039394 104_272_10505475_115_30390 Sorghum m... 84 7e-023
gb|CW159279.1|CW159279 104_565_11149276_116_36410_010 Sorgh... 84 7e-023
gb|AW678309.1|AW678309 WS1_14_G01.g1_A002 Water-stressed 1 ... 84 7e-023
gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1... 85 9e-023
gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation... 85 9e-023
gb|CW282926.1|CW282926 104_759_11408975_148_35475_094 Sorgh... 109 9e-023
gb|BG049497.1|BG049497 OV1_20_G04.g1_A002 Ovary 1 (OV1) Sor... 85 9e-023
gb|BG049053.1|BG049053 OV1_22_F09.g1_A002 Ovary 1 (OV1) Sor... 85 9e-023
gb|CW493211.1|CW493211 fsbb001f283n22k0 Sorghum methylation... 86 1e-022
gb|CN134928.1|CN134928 OX1_29_A10.g1_A002 Oxidatively-stres... 81 2e-022
gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced ... 103 2e-022
gb|AF402938.1|AF402938 Sorghum arundinaceum chitinase-B gen... 76 2e-022
gb|BE363379.1|BE363379 WS1_62_C05.g1_A002 Water-stressed 1 ... 74 3e-022
gb|CW324492.1|CW324492 104_819_11477191_148_35910_030 Sorgh... 81 3e-022
gb|CW363965.1|CW363965 fsbb001f035m22f0 Sorghum methylation... 81 3e-022
gb|CD227568.1|CD227568 CCC1_52_A02.b1_A007 Callus culture/c... 81 3e-022
gb|CW150340.1|CW150340 104_549_11142974_148_36301_051 Sorgh... 81 4e-022
gb|CF480059.1|CF480059 POL1_63_B05.g1_A002 Pollen Sorghum b... 106 4e-022
gb|BE362915.2|BE362915 DG1_90_E12.g1_A002 Dark Grown 1 (DG1... 84 8e-022
gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation... 86 1e-021
gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum m... 86 1e-021
gb|CN151360.1|CN151360 WOUND1_75_B02.b1_A002 Wounded leaves... 81 1e-021
gb|CW357974.1|CW357974 fsbb001f024n22k0 Sorghum methylation... 81 1e-021
gb|CW150339.1|CW150339 104_549_11142974_116_36302_051 Sorgh... 81 1e-021
gb|CD423411.1|CD423411 SA1_23_C09.b1_A002 Salicylic acid-tr... 81 1e-021
gb|CW318996.1|CW318996 104_811_11474252_116_35881_074 Sorgh... 81 1e-021
gb|BE359997.1|BE359997 DG1_60_H07.g2_A002 Dark Grown 1 (DG1... 81 1e-021
gb|AW924229.1|AW924229 WS1_51_H04.b1_A002 Water-stressed 1 ... 81 1e-021
gb|BG101749.1|BG101749 EM1_5_G10.b1_A002 Embryo 1 (EM1) Sor... 76 2e-021
gb|AY048375.1| Sorghum bicolor chitinase-B gene, partial cds 72 3e-021
gb|CD464022.1|CD464022 ETH1_48_G10.b1_A002 Ethylene-treated... 76 5e-021
gb|CD229267.1|CD229267 CCC1_14_D09.b1_A007 Callus culture/c... 76 5e-021
gb|AW922735.1|AW922735 DG1_45_B06.g1_A002 Dark Grown 1 (DG1... 76 5e-021
gb|CD224145.1|CD224145 CCC1_32_A09.b1_A007 Callus culture/c... 76 5e-021
gb|CD227859.1|CD227859 CCC1_56_F04.b1_A007 Callus culture/c... 76 5e-021
gb|CD229477.1|CD229477 CCC1_16_C07.b1_A007 Callus culture/c... 76 5e-021
gb|CD228687.1|CD228687 CCC1_9_D03.b1_A007 Callus culture/ce... 76 5e-021
gb|CD226496.1|CD226496 CCC1_46_E08.b1_A007 Callus culture/c... 76 5e-021
gb|CD223269.1|CD223269 CCC1_27_E04.b1_A007 Callus culture/c... 76 5e-021
gb|CD220455.1|CD220455 CCC1_67_F06.b1_A007 Callus culture/c... 76 5e-021
gb|CD228140.1|CD228140 CCC1_6_E03.b1_A007 Callus culture/ce... 76 5e-021
gb|AW746695.1|AW746695 WS1_54_E02.g1_A002 Water-stressed 1 ... 76 5e-021
gb|CD225586.1|CD225586 CCC1_40_H10.b1_A007 Callus culture/c... 76 5e-021
gb|BG556500.1|BG556500 EM1_37_H12.g1_A002 Embryo 1 (EM1) So... 76 5e-021
gb|CW098317.1|CW098317 104_464_11002941_148_34366_083 Sorgh... 76 5e-021
>gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_A10_A002 5', mRNA sequence
Length = 693
Score = 438 bits (950), Expect = e-122
Identities = 171/188 (90%), Positives = 178/188 (94%)
Frame = +3 / +3
Query: 99 QQGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGDEQTRRRELAA 278
+QGVWSIITRPMFQSMLSHRGDSGCQGAF TYDAFIEAASKFPGFGTTGD+QTRRRELAA
Sbjct: 129 KQGVWSIITRPMFQSMLSHRGDSGCQGAFCTYDAFIEAASKFPGFGTTGDDQTRRRELAA 308
Query: 279 FFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYYGRGPIQLTHKYNYRLAGQALN 458
FFGQTSHETTGGW TAP G FAWGYCRVKEQ TDPPYYGRGPIQLTH+YNYR AGQALN
Sbjct: 309 FFGQTSHETTGGWPTAPGGQFAWGYCRVKEQNPTDPPYYGRGPIQLTHEYNYRQAGQALN 488
Query: 459 LNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWTPSATDRAAGRLPGYGL 638
LNLVG+PDLV+ DPVVAFKTAIWFWMTPQSPKPSCHAVMTG WTPSA DRAAGRLPGYG+
Sbjct: 489 LNLVGNPDLVSSDPVVAFKTAIWFWMTPQSPKPSCHAVMTGSWTPSADDRAAGRLPGYGV 668
Query: 639 TSNIINGG 662
T+NIINGG
Sbjct: 669 TTNIINGG 692
Score = 369 bits (801), Expect = e-101
Identities = 160/211 (75%), Positives = 163/211 (77%)
Frame = -1 / -3
Query: 661 PPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSLATR 482
PPLMM V PYPGSLPAARS A+GVQ PV+TAWHDG GDCGVIQNQMAVLKATTGSL TR
Sbjct: 691 PPLMMLVVTPYPGSLPAARSSAEGVQLPVMTAWHDGFGDCGVIQNQMAVLKATTGSLDTR 512
Query: 481 SGSPTRFRFSACPASL*LYL*VSCMGPRP**GGSVCFCSFTRQYPQANGPSGAVAHPPVV 302
SG PTRFRFSACPA L*LY *VSCMGPRP**GGSV FCSFTRQYPQAN P GAV HPPVV
Sbjct: 511 SGLPTRFRFSACPACL*LYS*VSCMGPRP**GGSVGFCSFTRQYPQANCPPGAVGHPPVV 332
Query: 301 SWDVWPKKAASSRLRVCSSPVVPKPGNLLXXXXXXXXXXXAPWHPLSPRWLSMLWNMGRV 122
SWDV PKKAASSRLRV SSPVVPKPGNLL APW PLSPRWLSMLWNMGRV
Sbjct: 331 SWDVCPKKAASSRLRVWSSPVVPKPGNLLAASMNAS*VQNAPWQPLSPRWLSMLWNMGRV 152
Query: 121 MMLHTXXXXXXXXXXXXXXXXAMNRTIAKAL 29
MMLHT A T+AK L
Sbjct: 151 MMLHTPCFALAPPAAASSAAPAKTSTVAKTL 59
Score = 169 bits (364), Expect(2) = 6e-051
Identities = 76/101 (75%), Positives = 79/101 (78%)
Frame = -3 / -2
Query: 563 ARRLGRLRRHPEPDGRLEGYHGVSXXXXXXXXXXXXXRLPGEPVVVLMS*LYGSSSIVGW 384
ARRL RLRRHPEPDGRLEG+HGV+ RLP PVVVLMS*LYGSSSIVGW
Sbjct: 593 ARRLRRLRRHPEPDGRLEGHHGVARHQVRVAHQVQVQRLPSLPVVVLMS*LYGSSSIVGW 414
Query: 383 VRLFLFLHPAVSPGKRSIRSSRPSTGGFVGRLAEEGGELPP 261
VR LFLHPAVSPGK S RSS PSTG FVGRL+EEGGELPP
Sbjct: 413 VRGVLFLHPAVSPGKLSTRSSWPSTGSFVGRLSEEGGELPP 291
Score = 122 bits (260), Expect(2) = 2e-034
Identities = 48/55 (87%), Positives = 50/55 (90%)
Frame = +2 / +2
Query: 290 DVPRNHRWMGDCSGWTVCLGILPGEGTETDGPTLLWTRTHTANS*VQLQARRASA 454
DVPRN+RWM +CSGWTVCLGILPGEGTE GPTLLWTRTHTANS*VQLQA ASA
Sbjct: 320 DVPRNYRWMANCSGWTVCLGILPGEGTEPHGPTLLWTRTHTANS*VQLQASWASA 484
Score = 56.1 bits (116), Expect(2) = 6e-051
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = -3 / -2
Query: 134 HGPGDDAPHALLRAGAGSPGEQRGASHEQDHR*SP 30
HGP DDAPHALLRAGA EQRGA +Q R +P
Sbjct: 164 HGPRDDAPHALLRAGAAGRREQRGACQDQHRRQNP 60
Score = 48.3 bits (99), Expect(2) = 2e-034
Identities = 22/33 (66%), Positives = 22/33 (66%)
Frame = +1 / +1
Query: 31 GL*RWSCSWLAPRCSPGLPAPARSRACGASSPG 129
G R SW APRCS APARSRACGASS G
Sbjct: 61 GFWRRCWSWQAPRCSRRPAAPARSRACGASSRG 159
>gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232237, DNA
sequence
Length = 662
Score = 275 bits (596), Expect(3) = 5e-097
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +3 / +2
Query: 408 IQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDW 587
+++ +YNYR AGQALNLNLVG+PDLV+ DPVVAFKTAIWFWMTPQSPKPSCHAVMTG W
Sbjct: 221 LRVRSEYNYRQAGQALNLNLVGNPDLVSSDPVVAFKTAIWFWMTPQSPKPSCHAVMTGSW 400
Query: 588 TPSATDRAAGRLPGYGLTSNIINGGLECGKGQSTDGAKDRVGYYKRYCDMLRVGYGDNVP 767
TPSA DRAAGRLPGYG+T+NIINGG+ECGKGQSTD AKDRVGYYKRY DMLRV YGDN+
Sbjct: 401 TPSADDRAAGRLPGYGVTTNIINGGMECGKGQSTDAAKDRVGYYKRYSDMLRVRYGDNIA 580
Query: 768 CKDQKP 785
CKDQKP
Sbjct: 581 CKDQKP 598
Score = 247 bits (534), Expect(2) = 8e-084
Identities = 106/126 (84%), Positives = 109/126 (86%)
Frame = -1 / -3
Query: 802 RPHPP*GFWSLQGTLSPYPTRSISQYLL**PTRSLAPSVDWPLPHSSPPLMMFEVRPYPG 623
R PP*GFWSLQ LSP TRSIS+YLL**PTRSLA SVDWPLPHS PPLMM V PYPG
Sbjct: 615 RCQPP*GFWSLQAMLSP*RTRSISEYLL**PTRSLAASVDWPLPHSIPPLMMLVVTPYPG 436
Query: 622 SLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRFSACP 443
SLPAARS A+GVQ PV+TAWHDG GDCGVIQNQMAVLKATTGSL TRSG PTRFRFSACP
Sbjct: 435 SLPAARSSAEGVQLPVMTAWHDGFGDCGVIQNQMAVLKATTGSLDTRSGLPTRFRFSACP 256
Query: 442 ASL*LY 425
A L*LY
Sbjct: 255 ACL*LY 238
Score = 107 bits (228), Expect(2) = 2e-042
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = +2 / +1
Query: 644 EHHQRRARVRQGPVHRRRQGPGRLLQEVLRYAPGGVRGQRALQGPEALRRMRT 802
+HHQRR VRQGPVHRRRQGPGRLLQEVLRYAP +RGQ LQGPEALRR+ T
Sbjct: 457 QHHQRRDGVRQGPVHRRRQGPGRLLQEVLRYAPSALRGQHRLQGPEALRRLTT 615
Score = 94.1 bits (199), Expect(3) = 5e-097
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / +1
Query: 308 RWMGDCSGWTVCLGILPGEGTETDGPTLLWTRTHTANS 421
RWM +CSGWTVCLGILPGEGTE GPTLLWTRTHTANS
Sbjct: 4 RWMANCSGWTVCLGILPGEGTEPHGPTLLWTRTHTANS 117
Score = 89.5 bits (189), Expect(2) = 2e-042
Identities = 32/37 (86%), Positives = 32/37 (86%)
Frame = +3 / +2
Query: 309 GGWATAPDGPFAWGYCRVKEQKQTDPPYYGRGPIQLT 419
GGW TAP G FAWGYCRVKEQ TDPPYYGRGPIQLT
Sbjct: 5 GGWPTAPGGQFAWGYCRVKEQNPTDPPYYGRGPIQLT 115
Score = 85.4 bits (180), Expect(2) = 8e-084
Identities = 37/45 (82%), Positives = 37/45 (82%)
Frame = -1 / -3
Query: 442 ASL*LYL*VSCMGPRP**GGSVCFCSFTRQYPQANGPSGAVAHPP 308
A L L *VSCMGPRP**GGSV FCSFTRQYPQAN P GAV HPP
Sbjct: 138 ADLILAY*VSCMGPRP**GGSVGFCSFTRQYPQANCPPGAVGHPP 4
Score = 78.0 bits (164), Expect(2) = 6e-023
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = +1 / +3
Query: 310 VDGRLLRMDRLPGDTAG*RNRNRRTHPTMDEDPYS*L 420
VDG+LLR+D LPGDTAG*RNR RTHPTMDEDPYS*L
Sbjct: 6 VDGQLLRVDSLPGDTAG*RNRTPRTHPTMDEDPYS*L 116
Score = 73.9 bits (155), Expect(3) = 4e-032
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / -2
Query: 425 LMS*LYGSSSIVGWVRLFLFLHPAVSPGKRSIRSSRPST 309
L+S*LYGSSSIVGWVR LFLHPAVSPGK S RSS PST
Sbjct: 121 LLS*LYGSSSIVGWVRGVLFLHPAVSPGKLSTRSSWPST 5
Score = 63.8 bits (133), Expect(3) = 4e-032
Identities = 29/47 (61%), Positives = 31/47 (65%)
Frame = -3 / -2
Query: 563 ARRLGRLRRHPEPDGRLEGYHGVSXXXXXXXXXXXXXRLPGEPVVVL 423
ARRL RLRRHPEPDGRLEG+HGV+ RLP PVVVL
Sbjct: 376 ARRLRRLRRHPEPDGRLEGHHGVARHQVRVAHQVQVQRLPSLPVVVL 236
Score = 53.8 bits (111), Expect(2) = 6e-023
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = +1 / +3
Query: 709 SATTRGTAICSGWGTGTTCPARTRSLTEDED 801
SATTRGT ICS TGTT PARTRSLTE ++
Sbjct: 522 SATTRGTPICSECATGTTSPARTRSLTEADN 614
Score = 44.1 bits (90), Expect(3) = 4e-032
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = -2 / -1
Query: 789 RKASGPCRARCPRTPPGAYRST 724
RKASGPCR CPR+ GAYRST
Sbjct: 602 RKASGPCRRCCPRSALGAYRST 537
Score = 26.3 bits (51), Expect(3) = 5e-097
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / +1
Query: 794 MRTWTTIIIWLLQAF 838
+R TTI +WLLQAF
Sbjct: 598 LRRLTTIDLWLLQAF 642
>gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 330 bits (715), Expect(3) = 9e-093
Identities = 127/144 (88%), Positives = 134/144 (93%)
Frame = +3 / +3
Query: 354 CRVKEQKQTDPPYYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 533
CRVKEQ TDPPYYGRGPIQLTH+YNYR AGQALNLNLVG+PDLV+ DPVVAFKTAIWFW
Sbjct: 3 CRVKEQNPTDPPYYGRGPIQLTHEYNYRQAGQALNLNLVGNPDLVSSDPVVAFKTAIWFW 182
Query: 534 MTPQSPKPSCHAVMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGKGQSTDGAKDRVG 713
MTPQSPKPSCHAVMTG WTPSA DRAAGRLPGYG+T+NIINGG+ECGKGQSTD AKDRVG
Sbjct: 183 MTPQSPKPSCHAVMTGSWTPSADDRAAGRLPGYGVTTNIINGGMECGKGQSTDAAKDRVG 362
Query: 714 YYKRYCDMLRVGYGDNVPCKDQKP 785
YYKRY DMLRV YGDN+ CKDQKP
Sbjct: 363 YYKRYSDMLRVRYGDNIACKDQKP 434
Score = 295 bits (639), Expect = 7e-079
Identities = 128/150 (85%), Positives = 131/150 (87%)
Frame = -1 / -1
Query: 802 RPHPP*GFWSLQGTLSPYPTRSISQYLL**PTRSLAPSVDWPLPHSSPPLMMFEVRPYPG 623
R PP*GFWSLQ LSP TRSIS+YLL**PTRSLA SVDWPLPHS PPLMM V PYPG
Sbjct: 451 RCQPP*GFWSLQAMLSP*RTRSISEYLL**PTRSLAASVDWPLPHSIPPLMMLVVTPYPG 272
Query: 622 SLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRFSACP 443
SLPAARS A+GVQ PV+TAWHDG GDCGVIQNQMAVLKATTGSL TRSG PTRFRFSACP
Sbjct: 271 SLPAARSSAEGVQLPVMTAWHDGFGDCGVIQNQMAVLKATTGSLDTRSGLPTRFRFSACP 92
Query: 442 ASL*LYL*VSCMGPRP**GGSVCFCSFTRQ 353
A L*LY *VSCMGPRP**GGSV FCSFTRQ
Sbjct: 91 ACL*LYS*VSCMGPRP**GGSVGFCSFTRQ 2
Score = 110 bits (234), Expect(3) = 9e-031
Identities = 50/70 (71%), Positives = 52/70 (74%)
Frame = -3 / -3
Query: 563 ARRLGRLRRHPEPDGRLEGYHGVSXXXXXXXXXXXXXRLPGEPVVVLMS*LYGSSSIVGW 384
ARRL RLRRHPEPDGRLEG+HGV+ RLP PVVVLMS*LYGSSSIVGW
Sbjct: 212 ARRLRRLRRHPEPDGRLEGHHGVARHQVRVAHQVQVQRLPSLPVVVLMS*LYGSSSIVGW 33
Query: 383 VRLFLFLHPA 354
VR LFLHPA
Sbjct: 32 VRGVLFLHPA 3
Score = 107 bits (228), Expect(3) = 2e-037
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = +2 / +2
Query: 644 EHHQRRARVRQGPVHRRRQGPGRLLQEVLRYAPGGVRGQRALQGPEALRRMRT 802
+HHQRR VRQGPVHRRRQGPGRLLQEVLRYAP +RGQ LQGPEALRR+ T
Sbjct: 293 QHHQRRDGVRQGPVHRRRQGPGRLLQEVLRYAPSALRGQHRLQGPEALRRLTT 451
Score = 69.8 bits (146), Expect(3) = 2e-037
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = +2 / +2
Query: 353 LPGEGTETDGPTLLWTRTHTANS*VQLQARRASA 454
LPGEGTE GPTLLWTRTHTANS*VQLQA ASA
Sbjct: 2 LPGEGTEPHGPTLLWTRTHTANS*VQLQASWASA 103
Score = 44.1 bits (90), Expect(3) = 9e-031
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = -2 / -2
Query: 789 RKASGPCRARCPRTPPGAYRST 724
RKASGPCR CPR+ GAYRST
Sbjct: 438 RKASGPCRRCCPRSALGAYRST 373
Score = 26.3 bits (51), Expect(3) = 9e-093
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / +2
Query: 794 MRTWTTIIIWLLQAF 838
+R TTI +WLLQAF
Sbjct: 434 LRRLTTIDLWLLQAF 478
Score = 25.4 bits (49), Expect(3) = 9e-093
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / +2
Query: 962 SHLWMHDNE 988
SHLWMHD E
Sbjct: 611 SHLWMHDYE 637
Score = 23.1 bits (44), Expect(3) = 9e-031
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / -1
Query: 988 FVIMHPEM 965
FVIMHPEM
Sbjct: 637 FVIMHPEM 614
Score = 22.6 bits (43), Expect(3) = 2e-037
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / +3
Query: 966 ISGCMITN 989
ISGCMITN
Sbjct: 615 ISGCMITN 638
>gb|BE358815.1|BE358815 DG1_32_F07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 316 bits (684), Expect = 4e-085
Identities = 124/136 (91%), Positives = 129/136 (94%)
Frame = +3 / +3
Query: 99 QQGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGDEQTRRRELAA 278
+QGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGD+QTRRRELAA
Sbjct: 114 KQGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGDDQTRRRELAA 293
Query: 279 FFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYYGRGPIQLTHKYNYRLAGQALN 458
FFGQTSHETTGGW TAP G FAWGYCRVKEQ TDPPYYGRGPIQLTH+YNYR AGQALN
Sbjct: 294 FFGQTSHETTGGWPTAPGGQFAWGYCRVKEQNPTDPPYYGRGPIQLTHEYNYRQAGQALN 473
Query: 459 LNLVGDPDLVARDPVV 506
LNLVG+PDLV+ DPVV
Sbjct: 474 LNLVGNPDLVSSDPVV 521
Score = 261 bits (564), Expect = 1e-068
Identities = 116/159 (72%), Positives = 117/159 (73%)
Frame = -1 / -3
Query: 505 TTGSLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP**GGSVCFCSFTRQYPQANGPSG 326
TTGSL TRSG PTRFRFSACPA L*LY *VSCMGPRP**GGSV FCSFTRQYPQAN P G
Sbjct: 520 TTGSLDTRSGLPTRFRFSACPACL*LYS*VSCMGPRP**GGSVGFCSFTRQYPQANCPPG 341
Query: 325 AVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGNLLXXXXXXXXXXXAPWHPLSPRWLS 146
AV HPPVVSWDV PKKAASSRLRV SSPVVPKPGNLL APW PLSPRWLS
Sbjct: 340 AVGHPPVVSWDVCPKKAASSRLRVWSSPVVPKPGNLLAASMNAS*V*NAPWQPLSPRWLS 161
Query: 145 MLWNMGRVMMLHTXXXXXXXXXXXXXXXXAMNRTIAKAL 29
MLWNMGRVMMLHT A T+AK L
Sbjct: 160 MLWNMGRVMMLHTPCFALAPPAAASSAAPAKTSTVAKTL 44
Score = 126 bits (270), Expect(2) = 3e-038
Identities = 58/82 (70%), Positives = 61/82 (74%)
Frame = -3 / -2
Query: 506 YHGVSXXXXXXXXXXXXXRLPGEPVVVLMS*LYGSSSIVGWVRLFLFLHPAVSPGKRSIR 327
+HGV+ RLP PVVVLMS*LYGSSSIVGWVR LFLHPAVSPGK S R
Sbjct: 521 HHGVARHQVRVAHQVQVQRLPSLPVVVLMS*LYGSSSIVGWVRGVLFLHPAVSPGKLSTR 342
Query: 326 SSRPSTGGFVGRLAEEGGELPP 261
SS PSTG FVGRL+EEGGELPP
Sbjct: 341 SSWPSTGSFVGRLSEEGGELPP 276
Score = 122 bits (260), Expect(2) = 2e-034
Identities = 48/55 (87%), Positives = 50/55 (90%)
Frame = +2 / +2
Query: 290 DVPRNHRWMGDCSGWTVCLGILPGEGTETDGPTLLWTRTHTANS*VQLQARRASA 454
DVPRN+RWM +CSGWTVCLGILPGEGTE GPTLLWTRTHTANS*VQLQA ASA
Sbjct: 305 DVPRNYRWMANCSGWTVCLGILPGEGTEPHGPTLLWTRTHTANS*VQLQASWASA 469
Score = 56.1 bits (116), Expect(2) = 3e-038
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = -3 / -2
Query: 134 HGPGDDAPHALLRAGAGSPGEQRGASHEQDHR*SP 30
HGP DDAPHALLRAGA EQRGA +Q R +P
Sbjct: 149 HGPRDDAPHALLRAGAAGRREQRGACQDQHRRQNP 45
Score = 48.3 bits (99), Expect(2) = 2e-034
Identities = 22/33 (66%), Positives = 22/33 (66%)
Frame = +1 / +1
Query: 31 GL*RWSCSWLAPRCSPGLPAPARSRACGASSPG 129
G R SW APRCS APARSRACGASS G
Sbjct: 46 GFWRRCWSWQAPRCSRRPAAPARSRACGASSRG 144
>gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 740
Score = 144 bits (308), Expect(4) = 1e-081
Identities = 52/72 (72%), Positives = 60/72 (83%)
Frame = +3 / -1
Query: 465 LVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWTPSATDRAAGRLPGYGLTS 644
++ DPDLVA D V+F+TA+WFWMTPQ PKPSCHAV+TG W PS D AAGRLPGYG+ +
Sbjct: 371 ILDDPDLVATDATVSFETAVWFWMTPQPPKPSCHAVVTGQWAPSPADTAAGRLPGYGVVT 192
Query: 645 NIINGGLECGKG 680
NIINGGLECG G
Sbjct: 191 NIINGGLECGHG 156
Score = 121 bits (258), Expect(4) = 1e-081
Identities = 43/63 (68%), Positives = 52/63 (82%)
Frame = +3 / -1
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FYTY AF+ AA+ FPGFGTTG ++RE+AAF QTSHETTGGWA+APDGP+AWGYC
Sbjct: 710 FYTYSAFVAAANSFPGFGTTGSPDAQKREVAAFLAQTSHETTGGWASAPDGPYAWGYCYK 531
Query: 363 KEQ 371
+E+
Sbjct: 530 EEK 522
Score = 117 bits (250), Expect(3) = 2e-041
Identities = 48/69 (69%), Positives = 49/69 (71%)
Frame = -1 / +1
Query: 679 PLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATT 500
P PHS PPLMM PYPGSLPAA S DG PV TAWHDGLG CGVIQNQ AV T
Sbjct: 157 PWPHSRPPLMMLVTTPYPGSLPAAVSAGDGAHCPVTTAWHDGLGGCGVIQNQTAVSNETV 336
Query: 499 GSLATRSGS 473
S+ATRSGS
Sbjct: 337 ASVATRSGS 363
Score = 67.5 bits (141), Expect(3) = 2e-041
Identities = 31/47 (65%), Positives = 33/47 (70%)
Frame = -1 / +1
Query: 355 QYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGNLL 215
Q PQA GPSGA AHPPVVS DV + AA+SR PVVPKPGN L
Sbjct: 538 Q*PQA*GPSGADAHPPVVSCDVCARNAATSRFWASGLPVVPKPGNEL 678
Score = 56.1 bits (116), Expect(4) = 1e-081
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +3 / -1
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YG+NV C +Q+P
Sbjct: 137 DRIGFYKRYCDLLGVSYGNNVDCANQRP 54
Score = 41.8 bits (85), Expect(4) = 1e-081
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 390 YYGRGPIQLTHKYNYRLAGQAL 455
YYGRGPIQ+++ YNY AG+A+
Sbjct: 449 YYGRGPIQISYNYNYGPAGEAI 384
Score = 24.4 bits (47), Expect(3) = 2e-041
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3 / +3
Query: 449 LPGEPVVVLMS*LYGSSSIV 390
LPG PVVV++ L G +++V
Sbjct: 390 LPGGPVVVVVGDLDGPAAVV 449
>gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 639
Score = 196 bits (422), Expect(3) = 4e-080
Identities = 71/97 (73%), Positives = 83/97 (85%)
Frame = +3 / -1
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 453 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 274
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGKG 680
VMTG WTPS D AAGRLPGYG+ +NIINGGLECGKG
Sbjct: 273 VMTGQWTPSGADTAAGRLPGYGVVTNIINGGLECGKG 163
Score = 136 bits (292), Expect(3) = 4e-046
Identities = 63/96 (65%), Positives = 66/96 (68%)
Frame = -1 / +2
Query: 679 PLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATT 500
PLPHS PPLMM PYPG+LPAA S DGV PV+TAWHDGLGDCGVIQN AV T
Sbjct: 164 PLPHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTV 343
Query: 499 GSLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 392
GS ATRSG ACPA+ *L L* MGPRP*
Sbjct: 344 GSDATRSGLARMPAPMACPAAP*L*L*EIWMGPRP* 451
Score = 84.9 bits (179), Expect(3) = 4e-080
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = +3 / -1
Query: 255 TRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYY 395
T++RELAAF QTSHETTGGWATAPDG +AWGYC +EQ P Y
Sbjct: 636 TQKRELAAFLAQTSHETTGGWATAPDGAYAWGYCFKEEQGAASGPDY 496
Score = 60.6 bits (126), Expect(3) = 4e-046
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -1 / +2
Query: 370 CSFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRV 254
CS +Q PQA PSGAVAHPPVVS +VW + AASSR V
Sbjct: 521 CSSLKQ*PQA*APSGAVAHPPVVSCEVWARNAASSRFWV 637
Score = 58.3 bits (121), Expect(3) = 4e-080
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +3 / -1
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YGDN+ C +QKP
Sbjct: 144 DRIGFYKRYCDLLGVSYGDNLDCANQKP 61
Score = 28.1 bits (55), Expect(3) = 4e-046
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = -1 / +2
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRS 701
GFW Q LSP T S SQ L* P RS
Sbjct: 62 GFWLAQSKLSP*LTPSKSQ*RL*KPIRS 145
>gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 632
Score = 196 bits (422), Expect(3) = 5e-077
Identities = 71/97 (73%), Positives = 83/97 (85%)
Frame = +3 / +2
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 173 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 352
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGKG 680
VMTG WTPS D AAGRLPGYG+ +NIINGGLECGKG
Sbjct: 353 VMTGQWTPSGADTAAGRLPGYGVVTNIINGGLECGKG 463
Score = 136 bits (292), Expect(3) = 9e-045
Identities = 63/96 (65%), Positives = 66/96 (68%)
Frame = -1 / -3
Query: 679 PLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATT 500
PLPHS PPLMM PYPG+LPAA S DGV PV+TAWHDGLGDCGVIQN AV T
Sbjct: 462 PLPHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTV 283
Query: 499 GSLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 392
GS ATRSG ACPA+ *L L* MGPRP*
Sbjct: 282 GSDATRSGLARMPAPMACPAAP*L*L*EIWMGPRP* 175
Score = 74.8 bits (157), Expect(3) = 5e-077
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = +3 / +2
Query: 273 AAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYY 395
AAF QTSHETTGGWATAPDG +AWGYC +EQ P Y
Sbjct: 8 AAFLAQTSHETTGGWATAPDGAYAWGYCFKEEQGAASGPDY 130
Score = 58.3 bits (121), Expect(3) = 5e-077
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +3 / +2
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YGDN+ C +QKP
Sbjct: 482 DRIGFYKRYCDLLGVSYGDNLDCANQKP 565
Score = 56.1 bits (116), Expect(3) = 9e-045
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = -1 / -3
Query: 370 CSFTRQYPQANGPSGAVAHPPVVSWDVWPKKAAS 269
CS +Q PQA PSGAVAHPPVVS +VW + AAS
Sbjct: 105 CSSLKQ*PQA*APSGAVAHPPVVSCEVWARNAAS 4
Score = 28.1 bits (55), Expect(3) = 9e-045
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = -1 / -3
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRS 701
GFW Q LSP T S SQ L* P RS
Sbjct: 564 GFWLAQSKLSP*LTPSKSQ*RL*KPIRS 481
>gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 603
Score = 188 bits (406), Expect(3) = 8e-076
Identities = 70/100 (70%), Positives = 82/100 (82%)
Frame = +3 / +1
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA D V+F+TA+WFWMTPQSPKPSCH
Sbjct: 211 YYGRGPIQISYNYNYGPAGQAIGAGILANPDLVAADATVSFETAVWFWMTPQSPKPSCHD 390
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGKGQST 689
VMTG WTPSA D AAGRLPGYG+ +NIINGGLECG G T
Sbjct: 391 VMTGQWTPSAADIAAGRLPGYGVVTNIINGGLECGHGADT 510
Score = 131 bits (281), Expect(2) = 4e-039
Identities = 62/102 (60%), Positives = 65/102 (63%)
Frame = -1 / -2
Query: 697 APSVDWPLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMA 518
A V P PHS PPLMM PYPG+LPAA S ADGV PV+T+WHDGLGDCGVIQN A
Sbjct: 518 ATRVSAPWPHSRPPLMMLVTTPYPGNLPAAMSAADGVHCPVMTSWHDGLGDCGVIQNHTA 339
Query: 517 VLKATTGSLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 392
V T S ATRSG A PA *L L* MGPRP*
Sbjct: 338 VSNETVASAATRSGLARMPAPMAWPAGP*L*L*EIWMGPRP* 213
Score = 81.7 bits (172), Expect(3) = 8e-076
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = +3 / +1
Query: 237 TTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYY 395
T ++RELAAF QTSHETTGGWATAPDG +AWGYC +E+ P Y
Sbjct: 10 TGASPDVQKRELAAFLAQTSHETTGGWATAPDGAYAWGYCFKEEKDGASGPDY 168
Score = 54.7 bits (113), Expect(3) = 8e-076
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3 / +1
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YGDN+ C Q P
Sbjct: 520 DRIGFYKRYCDLLGVSYGDNLDCAHQMP 603
Score = 51.9 bits (107), Expect(2) = 4e-039
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = -1 / -2
Query: 367 SFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSR 263
S +Q PQA PSGAVAHPPVVS DV + AASSR
Sbjct: 140 SSLKQ*PQA*APSGAVAHPPVVSCDVCARNAASSR 36
>gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 600
Score = 196 bits (422), Expect(3) = 3e-069
Identities = 71/97 (73%), Positives = 83/97 (85%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 135 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 314
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGKG 680
VMTG WTPS D AAGRLPGYG+ +NIINGGLECGKG
Sbjct: 315 VMTGQWTPSGADTAAGRLPGYGVVTNIINGGLECGKG 425
Score = 136 bits (292), Expect(3) = 4e-039
Identities = 63/96 (65%), Positives = 66/96 (68%)
Frame = -1 / -3
Query: 679 PLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATT 500
PLPHS PPLMM PYPG+LPAA S DGV PV+TAWHDGLGDCGVIQN AV T
Sbjct: 424 PLPHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTV 245
Query: 499 GSLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 392
GS ATRSG ACPA+ *L L* MGPRP*
Sbjct: 244 GSDATRSGLARMPAPMACPAAP*L*L*EIWMGPRP* 137
Score = 58.3 bits (121), Expect(3) = 3e-069
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +3 / +3
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YGDN+ C +QKP
Sbjct: 444 DRIGFYKRYCDLLGVSYGDNLDCANQKP 527
Score = 48.7 bits (100), Expect(3) = 3e-069
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +3 / +3
Query: 306 TGGWATAPDGPFAWGYCRVKEQKQTDPPYY 395
TGGWATAPDG +A GYC +EQ P Y
Sbjct: 3 TGGWATAPDGAYAGGYCFKEEQGAASGPXY 92
Score = 36.8 bits (74), Expect(3) = 4e-039
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1 / -3
Query: 370 CSFTRQYPQANGPSGAVAHPPV 305
CS +Q P A PSGAVAHPPV
Sbjct: 67 CSSLKQ*PPA*APSGAVAHPPV 2
Score = 28.1 bits (55), Expect(3) = 4e-039
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = -1 / -3
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRS 701
GFW Q LSP T S SQ L* P RS
Sbjct: 526 GFWLAQSKLSP*LTPSKSQ*RL*KPIRS 443
>gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 3', mRNA sequence
Length = 809
Score = 161 bits (347), Expect(3) = 2e-068
Identities = 62/96 (64%), Positives = 77/96 (80%)
Frame = +3 / +1
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
Y+GRGPIQL+ +NY AGQAL + +G+P++VA DP VAFKTA+WFWMTP+SPKPSCH
Sbjct: 307 YHGRGPIQLSWNFNYGPAGQALGFDGLGNPEVVAGDPEVAFKTALWFWMTPRSPKPSCHD 486
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGK 677
VM G + P+ D AA R G+GLT+NIINGG+ECGK
Sbjct: 487 VMVGRYRPTDADVAANRTAGFGLTTNIINGGIECGK 594
Score = 117 bits (251), Expect(2) = 3e-038
Identities = 55/94 (58%), Positives = 62/94 (65%)
Frame = -1 / -1
Query: 676 LPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTG 497
LPHS PPL+M V P P L AA S + G P +T+WHDGLGD GVIQN AVL AT+G
Sbjct: 593 LPHSMPPLIMLVVSPNPAVLFAATSASVGRYRPTMTSWHDGLGDLGVIQNHSAVLNATSG 414
Query: 496 SLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP 395
S AT SG P+ + SACPA *L S MGPRP
Sbjct: 413 SPATTSGLPSPSKPSACPAGP*LKFHDSWMGPRP 312
Score = 109 bits (233), Expect(3) = 2e-068
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = +3 / +1
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FY Y +F+ AA +FP FG GD TR+RE+AAF Q SHETTGGWATAPDGP+AWG C
Sbjct: 55 FYNYTSFLRAAERFPAFGGDGDAATRKREVAAFLAQISHETTGGWATAPDGPYAWGLCFK 234
Query: 363 KE 368
+E
Sbjct: 235 EE 240
Score = 62.9 bits (131), Expect(2) = 3e-038
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = -1 / -1
Query: 367 SFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPG 224
S +Q P A GPSGAVAHPPVVS ++ + AA+SR RV +SP P G
Sbjct: 239 SSLKQSPHA*GPSGAVAHPPVVSCEICARNAATSRFRVAASPSPPNAG 96
Score = 29.0 bits (57), Expect(3) = 2e-068
Identities = 7/13 (53%), Positives = 13/13 (100%)
Frame = +3 / +1
Query: 702 DRVGYYKRYCDML 740
DR+G+++RYC++L
Sbjct: 616 DRIGFFRRYCELL 654
>gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254j12, DNA
sequence
Length = 507
Score = 165 bits (355), Expect(2) = 9e-067
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +3 / -3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 271 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 92
Query: 570 VMTGDWTPSATDRAAGRLPGYGLT 641
VMTG WTPS D AAGRLPGYG++
Sbjct: 91 VMTGQWTPSGADTAAGRLPGYGVS 20
Score = 111 bits (238), Expect(2) = 2e-042
Identities = 53/81 (65%), Positives = 56/81 (69%)
Frame = -1 / +3
Query: 634 PYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRF 455
PYPG+LPAA S DGV PV+TAWHDGLGDCGVIQN AV T GS ATRSG
Sbjct: 27 PYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGSDATRSGLARMPAP 206
Query: 454 SACPASL*LYL*VSCMGPRP* 392
ACPA+ *L L* MGPRP*
Sbjct: 207 MACPAAP*L*L*EIWMGPRP* 269
Score = 110 bits (235), Expect(2) = 9e-067
Identities = 43/64 (67%), Positives = 48/64 (75%)
Frame = +3 / -3
Query: 204 IEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTD 383
I AA+ FPGFGTTG T++RELAAF QTSHETTGGWATAPDG +AWGYC +EQ
Sbjct: 505 IAAANAFPGFGTTGGADTQKRELAAFLAQTSHETTGGWATAPDGAYAWGYCFKEEQGAAS 326
Query: 384 PPYY 395
P Y
Sbjct: 325 GPDY 314
Score = 82.6 bits (174), Expect(2) = 2e-042
Identities = 35/52 (67%), Positives = 39/52 (75%)
Frame = -1 / +3
Query: 370 CSFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGNLL 215
CS +Q PQA PSGAVAHPPVVS +VW + AASSR V + PVVPKPGN L
Sbjct: 339 CSSLKQ*PQA*APSGAVAHPPVVSCEVWARNAASSRFWVSAPPVVPKPGNAL 494
>gb|CW022215.1|CW022215 104_161_10431706_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431706, DNA
sequence
Length = 609
Score = 173 bits (373), Expect(2) = 3e-064
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +3 / -3
Query: 99 QQGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGDEQTRRRELAA 278
+QGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGD+QTRRRELAA
Sbjct: 532 KQGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGDDQTRRRELAA 353
Query: 279 FFGQTSHETTG 311
FFGQTSHETTG
Sbjct: 352 FFGQTSHETTG 320
Score = 131 bits (281), Expect(2) = 4e-049
Identities = 59/94 (62%), Positives = 60/94 (63%)
Frame = -1 / +3
Query: 310 PVVSWDVWPKKAASSRLRVCSSPVVPKPGNLLXXXXXXXXXXXAPWHPLSPRWLSMLWNM 131
PVVSWDV PKKAASSRLRV SSPVVPKPGNLL APW PLSPRWLSMLWNM
Sbjct: 321 PVVSWDVCPKKAASSRLRVWSSPVVPKPGNLLAASMNAS*V*NAPWQPLSPRWLSMLWNM 500
Query: 130 GRVMMLHTXXXXXXXXXXXXXXXXAMNRTIAKAL 29
GRVMMLHT A T+AK L
Sbjct: 501 GRVMMLHTPCFALAPPAAASSAAPAKTSTVAKTL 602
Score = 94.1 bits (199), Expect(2) = 3e-064
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / -1
Query: 308 RWMGDCSGWTVCLGILPGEGTETDGPTLLWTRTHTANS 421
RWM +CSGWTVCLGILPGEGTE GPTLLWTRTHTANS
Sbjct: 201 RWMANCSGWTVCLGILPGEGTEPHGPTLLWTRTHTANS 88
Score = 89.5 bits (189), Expect(3) = 1e-025
Identities = 32/37 (86%), Positives = 32/37 (86%)
Frame = +3 / -2
Query: 309 GGWATAPDGPFAWGYCRVKEQKQTDPPYYGRGPIQLT 419
GGW TAP G FAWGYCRVKEQ TDPPYYGRGPIQLT
Sbjct: 200 GGWPTAPGGQFAWGYCRVKEQNPTDPPYYGRGPIQLT 90
Score = 85.4 bits (180), Expect(2) = 4e-049
Identities = 37/45 (82%), Positives = 37/45 (82%)
Frame = -1 / +1
Query: 442 ASL*LYL*VSCMGPRP**GGSVCFCSFTRQYPQANGPSGAVAHPP 308
A L L *VSCMGPRP**GGSV FCSFTRQYPQAN P GAV HPP
Sbjct: 67 ADLILAY*VSCMGPRP**GGSVGFCSFTRQYPQANCPPGAVGHPP 201
Score = 73.9 bits (155), Expect(3) = 8e-029
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / +3
Query: 425 LMS*LYGSSSIVGWVRLFLFLHPAVSPGKRSIRSSRPST 309
L+S*LYGSSSIVGWVR LFLHPAVSPGK S RSS PST
Sbjct: 84 LLS*LYGSSSIVGWVRGVLFLHPAVSPGKLSTRSSWPST 200
Score = 56.1 bits (116), Expect(3) = 8e-029
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = -3 / +2
Query: 134 HGPGDDAPHALLRAGAGSPGEQRGASHEQDHR*SP 30
HGP DDAPHALLRAGA EQRGA +Q R +P
Sbjct: 497 HGPRDDAPHALLRAGAAGRREQRGACQDQHRRQNP 601
Score = 48.3 bits (99), Expect(3) = 1e-025
Identities = 22/33 (66%), Positives = 22/33 (66%)
Frame = +1 / -1
Query: 31 GL*RWSCSWLAPRCSPGLPAPARSRACGASSPG 129
G R SW APRCS APARSRACGASS G
Sbjct: 600 GFWRRCWSWQAPRCSRRPAAPARSRACGASSRG 502
Score = 40.5 bits (82), Expect(3) = 8e-029
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -3 / +2
Query: 311 TGGFVGRLAEEGGELPP 261
TG FVGRL+EEGGELPP
Sbjct: 320 TGSFVGRLSEEGGELPP 370
Score = 22.1 bits (42), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / -2
Query: 290 DVPRNHRWMG 319
DVPRN+R+ G
Sbjct: 341 DVPRNYRYAG 312
>gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 196 bits (422), Expect(2) = 2e-060
Identities = 71/97 (73%), Positives = 83/97 (85%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 18 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 197
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGKG 680
VMTG WTPS D AAGRLPGYG+ +NIINGGLECGKG
Sbjct: 198 VMTGQWTPSGADTAAGRLPGYGVVTNIINGGLECGKG 308
Score = 136 bits (292), Expect(2) = 2e-033
Identities = 63/96 (65%), Positives = 66/96 (68%)
Frame = -1 / -1
Query: 679 PLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATT 500
PLPHS PPLMM PYPG+LPAA S DGV PV+TAWHDGLGDCGVIQN AV T
Sbjct: 307 PLPHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTV 128
Query: 499 GSLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 392
GS ATRSG ACPA+ *L L* MGPRP*
Sbjct: 127 GSDATRSGLARMPAPMACPAAP*L*L*EIWMGPRP* 20
Score = 58.3 bits (121), Expect(2) = 2e-060
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +3 / +3
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YGDN+ C +QKP
Sbjct: 327 DRIGFYKRYCDLLGVSYGDNLDCANQKP 410
Score = 28.1 bits (55), Expect(2) = 2e-033
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = -1 / -1
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRS 701
GFW Q LSP T S SQ L* P RS
Sbjct: 409 GFWLAQSKLSP*LTPSKSQ*RL*KPIRS 326
>gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92e12 5', DNA sequence
Length = 608
Score = 144 bits (308), Expect(5) = 1e-059
Identities = 52/72 (72%), Positives = 60/72 (83%)
Frame = +3 / -1
Query: 465 LVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWTPSATDRAAGRLPGYGLTS 644
++ DPDLVA D V+F+TA+WFWMTPQ PKPSCHAV+TG W PS D AAGRLPGYG+ +
Sbjct: 362 ILDDPDLVATDATVSFETAVWFWMTPQPPKPSCHAVVTGQWAPSPADTAAGRLPGYGVVT 183
Query: 645 NIINGGLECGKG 680
NIINGGLECG G
Sbjct: 182 NIINGGLECGHG 147
Score = 117 bits (250), Expect(3) = 1e-028
Identities = 48/69 (69%), Positives = 49/69 (71%)
Frame = -1 / +1
Query: 679 PLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATT 500
P PHS PPLMM PYPGSLPAA S DG PV TAWHDGLG CGVIQNQ AV T
Sbjct: 148 PWPHSRPPLMMLVTTPYPGSLPAAVSAGDGAHCPVTTAWHDGLGGCGVIQNQTAVSNETV 327
Query: 499 GSLATRSGS 473
S+ATRSGS
Sbjct: 328 ASVATRSGS 354
Score = 56.1 bits (116), Expect(5) = 1e-059
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +3 / -1
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YG+NV C +Q+P
Sbjct: 128 DRIGFYKRYCDLLGVSYGNNVDCANQRP 45
Score = 41.8 bits (85), Expect(5) = 1e-059
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 390 YYGRGPIQLTHKYNYRLAGQAL 455
YYGRGPIQ+++ YNY AG+A+
Sbjct: 440 YYGRGPIQISYNYNYGPAGEAI 375
Score = 40.5 bits (82), Expect(5) = 1e-059
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3 / -1
Query: 312 GWATAPDGPFAWGYCRVKEQ 371
G A+APDGP+AWGYC +E+
Sbjct: 572 GGASAPDGPYAWGYCYKEEK 513
Score = 24.4 bits (47), Expect(3) = 1e-028
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3 / +3
Query: 449 LPGEPVVVLMS*LYGSSSIV 390
LPG PVVV++ L G +++V
Sbjct: 381 LPGGPVVVVVGDLDGPAAVV 440
Score = 24.4 bits (47), Expect(5) = 1e-059
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -2
Query: 279 FFGQTSHETTGG 314
F QTS ETTGG
Sbjct: 607 FLAQTSRETTGG 572
Score = 24.0 bits (46), Expect(3) = 1e-028
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 355 QYPQANGPSGAVAHP 311
Q PQA GPSGA A P
Sbjct: 529 Q*PQA*GPSGADAPP 573
>gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_F11_A011 5', mRNA sequence
Length = 527
Score = 177 bits (380), Expect(2) = 1e-054
Identities = 64/90 (71%), Positives = 76/90 (84%)
Frame = +3 / +3
Query: 411 QLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWT 590
Q+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHAVMTG WT
Sbjct: 3 QISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHAVMTGQWT 182
Query: 591 PSATDRAAGRLPGYGLTSNIINGGLECGKG 680
PS D AAGRLPGYG+ +NIINGGLECGKG
Sbjct: 183 PSGADTAAGRLPGYGVVTNIINGGLECGKG 272
Score = 125 bits (267), Expect(2) = 4e-030
Identities = 57/87 (65%), Positives = 60/87 (68%)
Frame = -1 / -2
Query: 679 PLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATT 500
PLPHS PPLMM PYPG+LPAA S DGV PV+TAWHDGLGDCGVIQN AV T
Sbjct: 271 PLPHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTV 92
Query: 499 GSLATRSGSPTRFRFSACPASL*LYL* 419
GS ATRSG ACPA+ *L L*
Sbjct: 91 GSDATRSGLARMPAPMACPAAP*L*L* 11
Score = 58.3 bits (121), Expect(2) = 1e-054
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +3 / +3
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YGDN+ C +QKP
Sbjct: 291 DRIGFYKRYCDLLGVSYGDNLDCANQKP 374
Score = 28.1 bits (55), Expect(2) = 4e-030
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = -1 / -2
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRS 701
GFW Q LSP T S SQ L* P RS
Sbjct: 373 GFWLAQSKLSP*LTPSKSQ*RL*KPIRS 290
>gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 177 bits (380), Expect(2) = 3e-054
Identities = 65/95 (68%), Positives = 78/95 (82%)
Frame = +3 / +1
Query: 396 GRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVM 575
GRGPIQ+++ Y Y AGQA+ ++ +PDLVA DP V+F+TA+WFW+TPQSPKPSCHAVM
Sbjct: 1 GRGPIQISYNYKYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWITPQSPKPSCHAVM 180
Query: 576 TGDWTPSATDRAAGRLPGYGLTSNIINGGLECGKG 680
TG TPS D AGRLPGYG+ +NIINGGLECGKG
Sbjct: 181 TGQCTPSGADTPAGRLPGYGVVTNIINGGLECGKG 285
Score = 128 bits (275), Expect(2) = 1e-032
Identities = 59/94 (62%), Positives = 62/94 (65%)
Frame = -1 / -3
Query: 679 PLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATT 500
PLPHS PPLMM PYPG+LPA S DGV PV+TAWHDGLGDCGVIQN AV T
Sbjct: 284 PLPHSRPPLMMLVTTPYPGNLPAGVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTV 105
Query: 499 GSLATRSGSPTRFRFSACPASL*LYL*VSCMGPR 398
GS ATRSG ACPA+ L L* MGPR
Sbjct: 104 GSDATRSGLARMPAPMACPAAPYL*L*EIWMGPR 3
Score = 57.4 bits (119), Expect(2) = 3e-054
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +3 / +1
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YGDN+ C +QKP
Sbjct: 304 DRIGFYKRYCDLLGVRYGDNLDCANQKP 387
Score = 33.1 bits (66), Expect(2) = 1e-032
Identities = 17/28 (60%), Positives = 17/28 (60%)
Frame = -1 / -3
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRS 701
GFW Q LSPY T S SQ L* P RS
Sbjct: 386 GFWLAQSKLSPYLTPSKSQ*RL*NPIRS 303
>gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 5', mRNA sequence
Length = 723
Score = 122 bits (260), Expect(2) = 2e-053
Identities = 47/75 (62%), Positives = 59/75 (78%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
Y+GRGPIQL+ +NY AGQAL + +G+P++VA DP VAFKTA+WFWMTP+SPKPSCH
Sbjct: 498 YHGRGPIQLSWNFNYGPAGQALGFDGLGNPEVVAGDPEVAFKTALWFWMTPRSPKPSCHD 677
Query: 570 VMTGDWTPSATDRAA 614
VM G + P+ D AA
Sbjct: 678 VMVGRYRPTDADVAA 722
Score = 109 bits (233), Expect(2) = 2e-053
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = +3 / +3
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FY Y +F+ AA +FP FG GD TR+RE+AAF Q SHETTGGWATAPDGP+AWG C
Sbjct: 246 FYNYTSFLRAAERFPAFGGDGDAATRKREVAAFLAQISHETTGGWATAPDGPYAWGLCFK 425
Query: 363 KE 368
+E
Sbjct: 426 EE 431
Score = 91.8 bits (194), Expect(2) = 2e-030
Identities = 43/73 (58%), Positives = 49/73 (67%)
Frame = -1 / -3
Query: 613 AARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRFSACPASL 434
AA S + G P +T+WHDGLGD GVIQN AVL AT+GS AT SG P+ + SACPA
Sbjct: 721 AATSASVGRYRPTMTSWHDGLGDLGVIQNHSAVLNATSGSPATTSGLPSPSKPSACPAGP 542
Query: 433 *LYL*VSCMGPRP 395
*L S MGPRP
Sbjct: 541 *LKFHDSWMGPRP 503
Score = 62.9 bits (131), Expect(2) = 2e-030
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = -1 / -3
Query: 367 SFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPG 224
S +Q P A GPSGAVAHPPVVS ++ + AA+SR RV +SP P G
Sbjct: 430 SSLKQSPHA*GPSGAVAHPPVVSCEICARNAATSRFRVAASPSPPNAG 287
>gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 5', mRNA sequence
Length = 805
Score = 111 bits (238), Expect(2) = 9e-051
Identities = 42/75 (56%), Positives = 56/75 (74%)
Frame = +3 / +1
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH
Sbjct: 577 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHE 756
Query: 570 VMTGDWTPSATDRAA 614
VM G++ P+A D AA
Sbjct: 757 VMVGEYRPTAADAAA 801
Score = 110 bits (235), Expect(2) = 9e-051
Identities = 42/62 (67%), Positives = 48/62 (77%)
Frame = +3 / +1
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FYTY +FI+AA FP F TGD TR+RE+AAFF Q SHETTGGWATAPDG +AWG C
Sbjct: 325 FYTYASFIQAARTFPKFAATGDLSTRKREVAAFFAQISHETTGGWATAPDGQYAWGLCYK 504
Query: 363 KE 368
+E
Sbjct: 505 EE 510
Score = 78.5 bits (165), Expect(2) = 7e-026
Identities = 40/73 (54%), Positives = 44/73 (60%)
Frame = -1 / -3
Query: 613 AARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRFSACPASL 434
AA S A G SP +T+WHDGLG GVIQN AV A + LAT SG + SACPA
Sbjct: 800 AAASAAVGRYSPTMTSWHDGLGRRGVIQNHSAVRNAVSEQLATTSGLRRPSKPSACPAGP 621
Query: 433 *LYL*VSCMGPRP 395
*L S MGPRP
Sbjct: 620 *LKFHDSWMGPRP 582
Score = 60.6 bits (126), Expect(2) = 7e-026
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -1 / -3
Query: 349 PQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGNLL 215
P A PSGAVA PPVVS ++ KKAA+SRLRV SPV GN+L
Sbjct: 491 PHAYCPSGAVAQPPVVS*EICAKKAATSRLRVLRSPVAANLGNVL 357
>gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 718
Score = 110 bits (235), Expect(2) = 3e-049
Identities = 42/62 (67%), Positives = 48/62 (77%)
Frame = +3 / +3
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FYTY +FI+AA FP F TGD TR+RE+AAFF Q SHETTGGWATAPDG +AWG C
Sbjct: 240 FYTYASFIQAARTFPKFAATGDLSTRKREVAAFFAQISHETTGGWATAPDGQYAWGLCYK 419
Query: 363 KE 368
+E
Sbjct: 420 EE 425
Score = 106 bits (227), Expect(2) = 3e-049
Identities = 41/75 (54%), Positives = 55/75 (73%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPS H
Sbjct: 492 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSWHE 671
Query: 570 VMTGDWTPSATDRAA 614
VM G++ P+A D AA
Sbjct: 672 VMVGEYRPTAADAAA 716
Score = 72.5 bits (152), Expect(2) = 4e-024
Identities = 39/73 (53%), Positives = 43/73 (58%)
Frame = -1 / -1
Query: 613 AARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRFSACPASL 434
AA S A G SP +T+ HDGLG GVIQN AV A + LAT SG + SACPA
Sbjct: 715 AAASAAVGRYSPTMTSCHDGLGRRGVIQNHSAVRNAVSEQLATTSGLRRPSKPSACPAGP 536
Query: 433 *LYL*VSCMGPRP 395
*L S MGPRP
Sbjct: 535 *LKFHDSWMGPRP 497
Score = 60.6 bits (126), Expect(2) = 4e-024
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -1 / -1
Query: 349 PQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGNLL 215
P A PSGAVA PPVVS ++ KKAA+SRLRV SPV GN+L
Sbjct: 406 PHAYCPSGAVAQPPVVS*EICAKKAATSRLRVLRSPVAANLGNVL 272
>gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 746
Score = 145 bits (312), Expect(3) = 5e-049
Identities = 54/96 (56%), Positives = 72/96 (75%)
Frame = +3 / -1
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH
Sbjct: 611 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHE 432
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGK 677
VM G++ P+A D AA R G+GL +NI+NGGLEC +
Sbjct: 431 VMVGEYRPTAADAAANRTAGFGLVTNIVNGGLECNR 324
Score = 96.8 bits (205), Expect(3) = 3e-025
Identities = 49/92 (53%), Positives = 53/92 (57%)
Frame = -1 / +1
Query: 670 HSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSL 491
HSSPPL M P P AA S A G SP +T+WHDGLG GVIQN AV A + L
Sbjct: 331 HSSPPLTMLVTSPNPAVRLAAASAAVGRYSPTMTSWHDGLGRRGVIQNHSAVRNAVSEQL 510
Query: 490 ATRSGSPTRFRFSACPASL*LYL*VSCMGPRP 395
AT SG + SACPA *L S MGPRP
Sbjct: 511 ATTSGLRRPSKPSACPAGP*LKFHDSWMGPRP 606
Score = 50.1 bits (103), Expect(3) = 5e-049
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +3 / -1
Query: 300 ETTGGWATAPDGPFAWGYCRVKE 368
ETTGGWATAPDG +AWG C +E
Sbjct: 746 ETTGGWATAPDGQYAWGLCYKEE 678
Score = 39.1 bits (79), Expect(3) = 5e-049
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3 / -1
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
+R+G+Y+RYC + V G N+ C Q+P
Sbjct: 302 NRIGFYQRYCQIFNVDAGANLDCAHQQP 219
Score = 29.0 bits (57), Expect(3) = 3e-025
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 349 PQANGPSGAVAHPPVV 302
P A PSGAVA PPVV
Sbjct: 697 PHAYCPSGAVAQPPVV 744
Score = 29.0 bits (57), Expect(3) = 3e-025
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -1 / +1
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRSLAPSVDWPLPHSSPPLMM 647
G W Q L+P T I QYL * P R L + L S P M+
Sbjct: 220 GCW*AQSRLAPASTLKIWQYLW*KPIRLLTRASSVRLHSSPPLTML 357
>gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223b16, DNA
sequence
Length = 452
Score = 153 bits (329), Expect(2) = 9e-047
Identities = 57/82 (69%), Positives = 66/82 (80%)
Frame = +3 / -1
Query: 444 GQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWTPSATDRAAGRL 623
GQA+ ++ +PDLVA D V+ +TA+WFWMTPQSPKPSCH VMTG WTPSA D AAGRL
Sbjct: 446 GQAIGAGILANPDLVAADATVSLETAVWFWMTPQSPKPSCHDVMTGQWTPSAADIAAGRL 267
Query: 624 PGYGLTSNIINGGLECGKGQST 689
PGYG+ +NIINGGLECG G T
Sbjct: 266 PGYGVVTNIINGGLECGHGADT 201
Score = 119 bits (255), Expect(2) = 1e-026
Identities = 49/74 (66%), Positives = 52/74 (70%)
Frame = -1 / +1
Query: 697 APSVDWPLPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMA 518
A V P PHS PPLMM PYPG+LPAA S ADGV PV+T+WHDGLGDCGVIQN A
Sbjct: 193 ATRVSAPWPHSRPPLMMLVTTPYPGNLPAAMSAADGVHCPVMTSWHDGLGDCGVIQNHTA 372
Query: 517 VLKATTGSLATRSG 476
V T S ATRSG
Sbjct: 373 VSNETVASAATRSG 414
Score = 55.6 bits (115), Expect(2) = 9e-047
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / -1
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YGDN+ C +Q P
Sbjct: 191 DRIGFYKRYCDLLGVSYGDNLDCANQMP 108
Score = 22.1 bits (42), Expect(2) = 1e-026
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -1 / +1
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRS 701
G W Q LSP T S SQ L* P S
Sbjct: 109 GIWLAQSKLSP*LTPSKSQ*RL*NPILS 192
>gb|BE125178.1|BE125178 DG1_14_A08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 342
Score = 183 bits (394), Expect = 4e-045
Identities = 72/77 (93%), Positives = 74/77 (96%)
Frame = +3 / +2
Query: 99 QQGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGDEQTRRRELAA 278
+ GVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGD+QTRRRELAA
Sbjct: 107 KHGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGDDQTRRRELAA 286
Query: 279 FFGQTSHETTGGWATAP 329
FFGQT HETTGGW TAP
Sbjct: 287 FFGQTFHETTGGWPTAP 337
Score = 145 bits (311), Expect = 1e-033
Identities = 64/102 (62%), Positives = 66/102 (64%)
Frame = -1 / -1
Query: 334 PSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGNLLXXXXXXXXXXXAPWHPLSPR 155
P GAV HPPVVSW+V PKKAASSRLRV SSPVVPKPGNLL APW PLSPR
Sbjct: 342 PPGAVGHPPVVSWNVCPKKAASSRLRVWSSPVVPKPGNLLAASMNAS*V*NAPWQPLSPR 163
Query: 154 WLSMLWNMGRVMMLHTXXXXXXXXXXXXXXXXAMNRTIAKAL 29
WLSMLWNMGRVMMLHT A T+AK L
Sbjct: 162 WLSMLWNMGRVMMLHTPCFALAPPAAASSAAPAKTSTVAKTL 37
>gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 708
Score = 119 bits (255), Expect(3) = 4e-044
Identities = 44/65 (67%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 426 YNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWTPSATD 605
YNY AG+A+ ++L+ +PDLVA DPVV+FKTA+WFWMT + KPSCHAV+TG WTP+A D
Sbjct: 104 YNYGPAGRAIGVDLLNNPDLVATDPVVSFKTALWFWMTARDNKPSCHAVITGQWTPTAAD 283
Query: 606 RAAGR 620
RAAGR
Sbjct: 284 RAAGR 298
Score = 56.5 bits (117), Expect(3) = 4e-044
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3 / +2
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+ R+GYG N+ C Q+P
Sbjct: 380 DRIGFYKRYCDVFRIGYGSNLDCDGQRP 463
Score = 42.3 bits (86), Expect(3) = 4e-044
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 624 PGYGLTSNIINGGLECGKG 680
PGYG+ +NIINGG+ECG G
Sbjct: 305 PGYGVITNIINGGIECGHG 361
>gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F08_A002 5', mRNA sequence
Length = 740
Score = 110 bits (235), Expect(2) = 6e-044
Identities = 42/62 (67%), Positives = 48/62 (77%)
Frame = +3 / +3
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FYTY +FI+AA FP F TGD TR+RE+AAFF Q SHETTGGWATAPDG +AWG C
Sbjct: 315 FYTYASFIQAARTFPKFAATGDLSTRKREVAAFFAQISHETTGGWATAPDGQYAWGLCYK 494
Query: 363 KE 368
+E
Sbjct: 495 EE 500
Score = 89.0 bits (188), Expect(2) = 6e-044
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSC 563
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSC
Sbjct: 567 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSC 740
>gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 694
Score = 121 bits (258), Expect(4) = 2e-043
Identities = 43/63 (68%), Positives = 52/63 (82%)
Frame = +3 / +1
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FYTY AF+ AA+ FPGFGTTG ++RE+AAF QTSHETTGGWA+APDGP+AWGYC
Sbjct: 283 FYTYSAFVAAANSFPGFGTTGSPDAQKREVAAFLAQTSHETTGGWASAPDGPYAWGYCYK 462
Query: 363 KEQ 371
+E+
Sbjct: 463 EEK 471
Score = 46.0 bits (94), Expect(4) = 2e-043
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3 / +1
Query: 465 LVGDPDLVARDPVVAFKTAIWFWM 536
++ DPDLVA D V+F+TA+WFWM
Sbjct: 622 ILDDPDLVATDATVSFETAVWFWM 693
Score = 41.8 bits (85), Expect(4) = 2e-043
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3 / +1
Query: 390 YYGRGPIQLTHKYNYRLAGQAL 455
YYGRGPIQ+++ YNY AG+A+
Sbjct: 544 YYGRGPIQISYNYNYGPAGEAI 609
Score = 24.9 bits (48), Expect(4) = 2e-043
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +1
Query: 108 VWSIITRPMFQSMLSHRGDSGC 173
V SII+ +F ML HR C
Sbjct: 205 VASIISESLFNQMLLHRNKPAC 270
>gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 3', mRNA sequence
Length = 599
Score = 145 bits (312), Expect(3) = 1e-042
Identities = 54/96 (56%), Positives = 72/96 (75%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH
Sbjct: 114 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHE 293
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGK 677
VM G++ P+A D AA R G+GL +NI+NGGLEC +
Sbjct: 294 VMVGEYRPTAADAAANRTAGFGLVTNIVNGGLECNR 401
Score = 96.8 bits (205), Expect(2) = 6e-022
Identities = 49/92 (53%), Positives = 53/92 (57%)
Frame = -1 / -2
Query: 670 HSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSL 491
HSSPPL M P P AA S A G SP +T+WHDGLG GVIQN AV A + L
Sbjct: 394 HSSPPLTMLVTSPNPAVRLAAASAAVGRYSPTMTSWHDGLGRRGVIQNHSAVRNAVSEQL 215
Query: 490 ATRSGSPTRFRFSACPASL*LYL*VSCMGPRP 395
AT SG + SACPA *L S MGPRP
Sbjct: 214 ATTSGLRRPSKPSACPAGP*LKFHDSWMGPRP 119
Score = 39.1 bits (79), Expect(3) = 1e-042
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3 / +3
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
+R+G+Y+RYC + V G N+ C Q+P
Sbjct: 423 NRIGFYQRYCQIFNVDAGANLDCAHQQP 506
Score = 29.0 bits (57), Expect(2) = 6e-022
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -1 / -2
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRSLAPSVDWPLPHSSPPLMM 647
G W Q L+P T I QYL * P R L + L S P M+
Sbjct: 505 GCW*AQSRLAPASTLKIWQYLW*KPIRLLTRASSVRLHSSPPLTML 368
Score = 28.6 bits (56), Expect(3) = 1e-042
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 324 APDGPFAWGYCRVKE 368
APDG +AWG C +E
Sbjct: 3 APDGQYAWGLCYKEE 47
>gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230799, DNA
sequence
Length = 583
Score = 161 bits (347), Expect(2) = 3e-041
Identities = 62/96 (64%), Positives = 77/96 (80%)
Frame = +3 / -2
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
Y+GRGPIQL+ +NY AGQAL + +G+P++VA DP VAFKTA+WFWMTP+SPKPSCH
Sbjct: 495 YHGRGPIQLSWNFNYGPAGQALGFDGLGNPEVVAGDPEVAFKTALWFWMTPRSPKPSCHD 316
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGK 677
VM G + P+ D AA R G+GLT+NIINGG+ECGK
Sbjct: 315 VMVGRYRPTDADVAANRTAGFGLTTNIINGGIECGK 208
Score = 111 bits (236), Expect = 3e-023
Identities = 54/94 (57%), Positives = 61/94 (64%)
Frame = -1 / +2
Query: 676 LPHSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTG 497
LPHS PPL+M V P P L AA S + G P +T+ HDGLGD GVIQN AVL AT+G
Sbjct: 209 LPHSMPPLIMLVVSPNPAVLFAATSASVGRYRPTMTS*HDGLGDLGVIQNHSAVLNATSG 388
Query: 496 SLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP 395
S AT SG P+ + SACPA *L S MGPRP
Sbjct: 389 SPATTSGLPSPSKPSACPAGP*LKFHDSWMGPRP 490
Score = 29.0 bits (57), Expect(2) = 3e-041
Identities = 7/13 (53%), Positives = 13/13 (100%)
Frame = +3 / -2
Query: 702 DRVGYYKRYCDML 740
DR+G+++RYC++L
Sbjct: 186 DRIGFFRRYCELL 148
>gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F08_A002 3', mRNA sequence
Length = 632
Score = 139 bits (299), Expect(3) = 3e-040
Identities = 53/96 (55%), Positives = 71/96 (73%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 569
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+ FWMTP+ PKPSCH
Sbjct: 111 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALCFWMTPRRPKPSCHE 290
Query: 570 VMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGK 677
VM G++ P+A D AA R G+GL +NI+NGGLEC +
Sbjct: 291 VMVGEYRPTAADAAANRTAGFGLVTNIVNGGLECNR 398
Score = 94.1 bits (199), Expect(2) = 4e-021
Identities = 48/92 (52%), Positives = 52/92 (56%)
Frame = -1 / -2
Query: 670 HSSPPLMMFEVRPYPGSLPAARSVADGVQSPVITAWHDGLGDCGVIQNQMAVLKATTGSL 491
HSSPPL M P P AA S A G SP +T+WHDGLG GVIQ AV A + L
Sbjct: 391 HSSPPLTMLVTSPNPAVRLAAASAAVGRYSPTMTSWHDGLGRRGVIQKHSAVRNAVSEQL 212
Query: 490 ATRSGSPTRFRFSACPASL*LYL*VSCMGPRP 395
AT SG + SACPA *L S MGPRP
Sbjct: 211 ATTSGLRRPSKPSACPAGP*LKFHDSWMGPRP 116
Score = 39.1 bits (79), Expect(3) = 3e-040
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3 / +3
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
+R+G+Y+RYC + V G N+ C Q+P
Sbjct: 420 NRIGFYQRYCQIFNVDAGANLDCAHQQP 503
Score = 29.0 bits (57), Expect(2) = 4e-021
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -1 / -2
Query: 784 GFWSLQGTLSPYPTRSISQYLL**PTRSLAPSVDWPLPHSSPPLMM 647
G W Q L+P T I QYL * P R L + L S P M+
Sbjct: 502 GCW*AQSRLAPASTLKIWQYLW*KPIRLLTRASSVRLHSSPPLTML 365
Score = 26.7 bits (52), Expect(3) = 3e-040
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 327 PDGPFAWGYCRVKE 368
PDG +AWG C +E
Sbjct: 3 PDGQYAWGLCYKEE 44
>gb|CW276618.1|CW276618 104_750_11405587_148_35398_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405587, DNA
sequence
Length = 582
Score = 121 bits (258), Expect(3) = 5e-035
Identities = 43/63 (68%), Positives = 52/63 (82%)
Frame = +3 / -2
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FYTY AF+ AA+ FPGFGTTG ++RE+AAF QTSHETTGGWA+APDGP+AWGYC
Sbjct: 353 FYTYSAFVAAANSFPGFGTTGSPDAQKREVAAFLAQTSHETTGGWASAPDGPYAWGYCYK 174
Query: 363 KEQ 371
+E+
Sbjct: 173 EEK 165
Score = 41.8 bits (85), Expect(3) = 5e-035
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3 / -2
Query: 390 YYGRGPIQLTHKYNYRLAGQAL 455
YYGRGPIQ+++ YNY AG+A+
Sbjct: 92 YYGRGPIQISYNYNYGPAGEAI 27
Score = 24.9 bits (48), Expect(3) = 5e-035
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / -2
Query: 108 VWSIITRPMFQSMLSHRGDSGC 173
V SII+ +F ML HR C
Sbjct: 431 VASIISESLFNQMLLHRNKPAC 366
>gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198p08, DNA
sequence
Length = 772
Score = 134 bits (287), Expect(3) = 2e-034
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = +3 / +3
Query: 609 AAGRLPGYGLTSNIINGGLECGKGQSTDGAKDRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
AAGRLPGYG+T+NIINGG+ECGKGQSTD AKDRVGYYKRY DMLRV YGDN+ CKDQKP
Sbjct: 3 AAGRLPGYGVTTNIINGGMECGKGQSTDAAKDRVGYYKRYSDMLRVRYGDNIACKDQKP 179
Score = 122 bits (262), Expect(2) = 4e-027
Identities = 53/65 (81%), Positives = 54/65 (83%)
Frame = -1 / -1
Query: 802 RPHPP*GFWSLQGTLSPYPTRSISQYLL**PTRSLAPSVDWPLPHSSPPLMMFEVRPYPG 623
R PP*GFWSLQ LSP TRSIS+YLL**PTRSLA SVDWPLPHS PPLMM V PYPG
Sbjct: 196 RCQPP*GFWSLQAMLSP*RTRSISEYLL**PTRSLAASVDWPLPHSIPPLMMLVVTPYPG 17
Query: 622 SLPAA 608
SLPAA
Sbjct: 16 SLPAA 2
Score = 107 bits (228), Expect(2) = 2e-022
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = +2 / +2
Query: 644 EHHQRRARVRQGPVHRRRQGPGRLLQEVLRYAPGGVRGQRALQGPEALRRMRT 802
+HHQRR VRQGPVHRRRQGPGRLLQEVLRYAP +RGQ LQGPEALRR+ T
Sbjct: 38 QHHQRRDGVRQGPVHRRRQGPGRLLQEVLRYAPSALRGQHRLQGPEALRRLTT 196
Score = 26.3 bits (51), Expect(3) = 2e-034
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / +2
Query: 794 MRTWTTIIIWLLQAF 838
+R TTI +WLLQAF
Sbjct: 179 LRRLTTIDLWLLQAF 223
Score = 25.4 bits (49), Expect(3) = 2e-034
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / +2
Query: 962 SHLWMHDNE 988
SHLWMHD E
Sbjct: 356 SHLWMHDYE 382
Score = 23.1 bits (44), Expect(2) = 4e-027
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1 / -1
Query: 988 FVIMHPEM 965
FVIMHPEM
Sbjct: 382 FVIMHPEM 359
Score = 22.6 bits (43), Expect(2) = 2e-022
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3 / +3
Query: 966 ISGCMITN 989
ISGCMITN
Sbjct: 360 ISGCMITN 383
>gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805558, DNA
sequence
Length = 680
Score = 126 bits (270), Expect(2) = 8e-034
Identities = 47/88 (53%), Positives = 64/88 (72%)
Frame = +3 / +3
Query: 414 LTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWTP 593
L+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH VM G++ P
Sbjct: 3 LSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHEVMVGEYRP 182
Query: 594 SATDRAAGRLPGYGLTSNIINGGLECGK 677
+A D AA R G+GL +NI+NGGLEC +
Sbjct: 183 TAADAAANRTAGFGLVTNIVNGGLECNR 266
Score = 39.1 bits (79), Expect(2) = 8e-034
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3 / +3
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
+R+G+Y+RYC + V G N+ C Q+P
Sbjct: 288 NRIGFYQRYCQIFNVDAGANLDCAHQQP 371
>gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D07_A002 3', mRNA sequence
Length = 635
Score = 120 bits (256), Expect(2) = 7e-032
Identities = 44/79 (55%), Positives = 59/79 (74%)
Frame = +3 / +1
Query: 441 AGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWTPSATDRAAGR 620
AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH VM G++ P+A D AA R
Sbjct: 10 AGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHEVMVGEYRPTAADAAANR 189
Query: 621 LPGYGLTSNIINGGLECGK 677
G+GL +NI+NGGLEC +
Sbjct: 190 TAGFGLVTNIVNGGLECNR 246
Score = 39.1 bits (79), Expect(2) = 7e-032
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3 / +1
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
+R+G+Y+RYC + V G N+ C Q+P
Sbjct: 268 NRIGFYQRYCQIFNVDAGANLDCAHQQP 351
>gb|CX610007.1|CX610007 ANR1_16_C10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_C10_A002 3', mRNA sequence
Length = 714
Score = 81.3 bits (171), Expect(5) = 4e-031
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 536
YYGRGP+Q++ YNY AGQ++ + +G+PD VA+D V+AFK A+WFWM
Sbjct: 345 YYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWM 491
Score = 39.6 bits (80), Expect(5) = 4e-031
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3 / +3
Query: 210 AASKFPGFGTTGDEQTRRRELAAFFGQTSHET 305
+AS + GF G E +RE+AAFF +HET
Sbjct: 159 SASAYSGFAQGGSEDDGKREIAAFFAHATHET 254
Score = 35.0 bits (70), Expect(5) = 4e-031
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3 / +3
Query: 705 RVGYYKRYCDMLRVGYGDNVPC 770
RVGYYK+YC V G N+ C
Sbjct: 594 RVGYYKQYCQQFGVDPGSNLTC 659
Score = 27.2 bits (53), Expect(5) = 4e-031
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3 / +3
Query: 108 VWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAAS 218
V +++T F + + G FY+ DAF+ AAS
Sbjct: 51 VGNVVTDAFFNGIKNQAGSGCEGSNFYSRDAFLSAAS 161
Score = 25.8 bits (50), Expect(5) = 4e-031
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +3
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 519 GFGATIRAINGALEC 563
>gb|CW206618.1|CW206618 104_635_11187687_148_36965_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 587
Score = 126 bits (270), Expect(2) = 8e-031
Identities = 49/71 (69%), Positives = 54/71 (76%)
Frame = +3 / +2
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FYTY AFI AA+ FPGFGTTG T++RELAAF QTSHETTGGWATAPDG +AWGYC
Sbjct: 338 FYTYSAFIAAANAFPGFGTTGGADTQKRELAAFLAQTSHETTGGWATAPDGAYAWGYCFK 517
Query: 363 KEQKQTDPPYY 395
+EQ P Y
Sbjct: 518 EEQGAASGPDY 550
Score = 29.0 bits (57), Expect(2) = 8e-031
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3 / +2
Query: 108 VWSIITRPMFQSMLSHRGDSGC 173
V SII+ +F ML HR D+ C
Sbjct: 260 VASIISESLFNQMLLHRNDAAC 325
>gb|CW362042.1|CW362042 fsbb001f030o20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f030o20, DNA
sequence
Length = 627
Score = 106 bits (226), Expect(2) = 4e-030
Identities = 43/70 (61%), Positives = 53/70 (75%)
Frame = +3 / -2
Query: 102 QGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGDEQTRRRELAAF 281
QGV S+IT+ ++ +ML +R ++ C FYTYDAFI AA+ FP FGTTG +RELAAF
Sbjct: 425 QGVGSVITQSVYDTMLPNRDNTLCASGFYTYDAFIAAAAAFPSFGTTGSADDVKRELAAF 246
Query: 282 FGQTSHETTG 311
FGQTSHETTG
Sbjct: 245 FGQTSHETTG 216
Score = 49.2 bits (101), Expect(2) = 4e-030
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +3 / -2
Query: 339 FAWGYCRVKEQKQTDPPYYGRGPIQLT 419
F WGYC +E T PPY GRGPIQLT
Sbjct: 92 FEWGYCFKEEITPTSPPYQGRGPIQLT 12
>gb|CF486597.1|CF486597 POL1_38_D07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D07_A002 5', mRNA sequence
Length = 683
Score = 110 bits (235), Expect(2) = 1e-029
Identities = 42/62 (67%), Positives = 48/62 (77%)
Frame = +3 / +3
Query: 183 FYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRV 362
FYTY +FI+AA FP F TGD TR+RE+AAFF Q SHETTGGWATAPDG +AWG C
Sbjct: 342 FYTYASFIQAARTFPKFAATGDLSTRKREVAAFFAQISHETTGGWATAPDGQYAWGLCYK 521
Query: 363 KE 368
+E
Sbjct: 522 EE 527
Score = 40.9 bits (83), Expect(2) = 1e-029
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDP 479
Y+GRGPIQL+ +NY AGQAL + + +P
Sbjct: 594 YHGRGPIQLSWNFNYGPAGQALGFDGLRNP 683
>gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 642
Score = 92.7 bits (196), Expect(2) = 1e-028
Identities = 35/45 (77%), Positives = 37/45 (82%)
Frame = +3 / -2
Query: 555 PSCHAVMTGDWTPSATDRAAGRLPGYGLTSNIINGGLECGKGQST 689
PSCH VMTG WTPSA D AAGRLPGYG+ +NIINGGLECG G T
Sbjct: 641 PSCHDVMTGQWTPSAADIAAGRLPGYGVVTNIINGGLECGHGADT 507
Score = 55.6 bits (115), Expect(2) = 1e-028
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / -2
Query: 702 DRVGYYKRYCDMLRVGYGDNVPCKDQKP 785
DR+G+YKRYCD+L V YGDN+ C +Q P
Sbjct: 497 DRIGFYKRYCDLLGVSYGDNLDCANQMP 414
>gb|CN125314.1|CN125314 RHOH1_10_G12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_G12_A002 3', mRNA sequence
Length = 485
Score = 119 bits (254), Expect(2) = 1e-028
Identities = 48/79 (60%), Positives = 60/79 (75%)
Frame = +3 / +1
Query: 441 AGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWTPSATDRAAGR 620
AGQAL + +G+P++VA DP V KTA+WFWMT +SPKPS H VM G + P+ D AA R
Sbjct: 1 AGQALGFDGLGNPEVVAGDPGVE*KTALWFWMTRRSPKPSRHDVMVGRYRPTDADVAANR 180
Query: 621 LPGYGLTSNIINGGLECGK 677
G+GLT+NIINGG+ECGK
Sbjct: 181 TAGFGLTTNIINGGIECGK 237
Score = 29.0 bits (57), Expect(2) = 1e-028
Identities = 7/13 (53%), Positives = 13/13 (100%)
Frame = +3 / +1
Query: 702 DRVGYYKRYCDML 740
DR+G+++RYC++L
Sbjct: 259 DRIGFFRRYCELL 297
>gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_9_D11_A002 3', mRNA sequence
Length = 812
Score = 74.4 bits (156), Expect(5) = 3e-028
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 533
YYGRGP+Q++ YNY AG+ + + + +PD VA+D VVAFKTA+WFW
Sbjct: 306 YYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFW 449
Score = 37.7 bits (76), Expect(5) = 3e-028
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3 / +3
Query: 678 GQSTDGAKDRVGYYKRYCDMLRVGYGDNVPC 770
G++T RVGYY++YC L V G N+ C
Sbjct: 528 GKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 620
Score = 33.6 bits (67), Expect(5) = 3e-028
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3 / +3
Query: 108 VWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFG 236
V ++T F S+ + G+ FYT AF+ AA + GFG
Sbjct: 24 VAGVVTDAFFNSIKNQAGNGCEGKNFYTRSAFLSAADAYKGFG 152
Score = 27.2 bits (53), Expect(5) = 3e-028
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3 / +3
Query: 234 GTTGDEQTRRRELAAFFGQTSHET 305
G G +RE+AAFF +HET
Sbjct: 144 GFGGRSVQGKREIAAFFAHITHET 215
Score = 25.8 bits (50), Expect(5) = 3e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +3
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 480 GFGATIRAINGALEC 524
>gb|AW922776.1|AW922776 DG1_46_C01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 737
Score = 81.3 bits (171), Expect(4) = 4e-028
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = +3 / +1
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 536
YYGRGP+Q++ YNY AGQ++ + +G+PD VA+D V+AFK A+WFWM
Sbjct: 217 YYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWM 363
Score = 39.6 bits (80), Expect(4) = 4e-028
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3 / +1
Query: 210 AASKFPGFGTTGDEQTRRRELAAFFGQTSHET 305
+AS + GF G E +RE+AAFF +HET
Sbjct: 31 SASAYSGFAQGGSEDDGKREIAAFFAHATHET 126
Score = 35.0 bits (70), Expect(4) = 4e-028
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3 / +1
Query: 705 RVGYYKRYCDMLRVGYGDNVPC 770
RVGYYK+YC V G N+ C
Sbjct: 466 RVGYYKQYCQQFGVDPGSNLTC 531
Score = 25.8 bits (50), Expect(4) = 4e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 391 GFGATIRAINGALEC 435
>gb|CX613448.1|CX613448 GABR1_8_E12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_E12_A002 3', mRNA sequence
Length = 722
Score = 81.3 bits (171), Expect(4) = 4e-028
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 536
YYGRGP+Q++ YNY AGQ++ + +G+PD VA+D V+AFK A+WFWM
Sbjct: 195 YYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWM 341
Score = 39.6 bits (80), Expect(4) = 4e-028
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3 / +3
Query: 210 AASKFPGFGTTGDEQTRRRELAAFFGQTSHET 305
+AS + GF G E +RE+AAFF +HET
Sbjct: 9 SASAYSGFAQGGSEDDGKREIAAFFAHATHET 104
Score = 35.0 bits (70), Expect(4) = 4e-028
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3 / +3
Query: 705 RVGYYKRYCDMLRVGYGDNVPC 770
RVGYYK+YC V G N+ C
Sbjct: 444 RVGYYKQYCQQFGVDPGSNLTC 509
Score = 25.8 bits (50), Expect(4) = 4e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +3
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 369 GFGATIRAINGALEC 413
>gb|CW371155.1|CW371155 fsbb001f046h18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f046h18, DNA
sequence
Length = 415
Score = 125 bits (268), Expect = 1e-027
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +3 / -2
Query: 99 QQGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGD 248
+QGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGD
Sbjct: 150 KQGVWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGD 1
>gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404861, DNA
sequence
Length = 627
Score = 85.8 bits (181), Expect(4) = 5e-027
Identities = 29/49 (59%), Positives = 41/49 (83%)
Frame = +3 / -1
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 536
YYGRGP+Q++ YNY AG+ + + +G+PD+VA+DPV+AFKTA+WFWM
Sbjct: 345 YYGRGPLQISWNYNYGPAGREIGFDGLGNPDMVAQDPVIAFKTALWFWM 199
Score = 39.6 bits (80), Expect(4) = 5e-027
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3 / -3
Query: 210 AASKFPGFGTTGDEQTRRRELAAFFGQTSHET 305
A+S +P F G E +RE+AAFF +HET
Sbjct: 619 ASSSYPAFAHGGTEADGKREIAAFFAHVTHET 524
Score = 33.1 bits (66), Expect(4) = 5e-027
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / -1
Query: 705 RVGYYKRYCDMLRVGYGDNVPC 770
RVGYYK+YC V G+++ C
Sbjct: 96 RVGYYKQYCQQFGVDPGNSLTC 31
Score = 23.5 bits (45), Expect(4) = 5e-027
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 627 GYGLTSNIINGGLEC 671
G+G T I+G LEC
Sbjct: 171 GFGATIRAIDGALEC 127
>gb|BE918012.1|BE918012 OV1_8_G11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 710
Score = 74.4 bits (156), Expect(5) = 1e-026
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +3 / +2
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 533
YYGRGP+Q++ YNY AG+ + + + +PD VA+D VVAFKTA+WFW
Sbjct: 245 YYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFW 388
Score = 37.7 bits (76), Expect(5) = 1e-026
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3 / +2
Query: 678 GQSTDGAKDRVGYYKRYCDMLRVGYGDNVPC 770
G++T RVGYY++YC L V G N+ C
Sbjct: 467 GKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 559
Score = 28.1 bits (55), Expect(5) = 1e-026
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3 / +2
Query: 183 FYTYDAFIEAASKFPGFG 236
FYT AF+ AA + GFG
Sbjct: 38 FYTRSAFLSAADAYKGFG 91
Score = 27.2 bits (53), Expect(5) = 1e-026
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3 / +2
Query: 234 GTTGDEQTRRRELAAFFGQTSHET 305
G G +RE+AAFF +HET
Sbjct: 83 GFGGRSVQGKREIAAFFAHITHET 154
Score = 25.8 bits (50), Expect(5) = 1e-026
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +2
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 419 GFGATIRAINGALEC 463
>gb|AF402939.1|AF402939 Sorghum halepense chitinase-B gene, partial cds
Length = 922
Score = 73.9 bits (155), Expect(5) = 2e-026
Identities = 26/48 (54%), Positives = 37/48 (77%)
Frame = +3 / +2
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 533
YYGRGP+Q++ YNY AG+ + + + +PD VA+D V+AFKTA+WFW
Sbjct: 605 YYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVIAFKTALWFW 748
Score = 37.7 bits (76), Expect(5) = 2e-026
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3 / +2
Query: 678 GQSTDGAKDRVGYYKRYCDMLRVGYGDNVPC 770
G++T RVGYY++YC L V G N+ C
Sbjct: 827 GKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 919
Score = 33.6 bits (67), Expect(5) = 2e-026
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3 / +1
Query: 108 VWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFG 236
V S++T F + + G+ FYT AF+ AA + GFG
Sbjct: 187 VASVVTDAFFNGIKNQAGNGCEGKNFYTRSAFLSAADAYKGFG 315
Score = 28.1 bits (55), Expect(5) = 2e-026
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3 / +1
Query: 234 GTTGDEQTRRRELAAFFGQTSHET 305
G G +RE+AAFF +HET
Sbjct: 307 GFGGGSVQGKREIAAFFAHVTHET 378
Score = 25.8 bits (50), Expect(5) = 2e-026
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +2
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 779 GFGATIRAINGALEC 823
>gb|CD223183.1|CD223183 CCC1_26_G01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_26_G01_A007 5', mRNA sequence
Length = 662
Score = 74.4 bits (156), Expect(5) = 2e-026
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +3 / +1
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 533
YYGRGP+Q++ YNY AG+ + + + +PD VA+D VVAFKTA+WFW
Sbjct: 256 YYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFW 399
Score = 37.7 bits (76), Expect(5) = 2e-026
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3 / +1
Query: 678 GQSTDGAKDRVGYYKRYCDMLRVGYGDNVPC 770
G++T RVGYY++YC L V G N+ C
Sbjct: 478 GKNTAQMNARVGYYRQYCQQLGVDPGPNLTC 570
Score = 28.1 bits (55), Expect(5) = 2e-026
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3 / +1
Query: 183 FYTYDAFIEAASKFPGFG 236
FYT AF+ AA + GFG
Sbjct: 49 FYTRSAFLSAADAYKGFG 102
Score = 26.7 bits (52), Expect(5) = 2e-026
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3 / +1
Query: 234 GTTGDEQTRRRELAAFFGQTSHET 305
G G +RE+AAFF +HET
Sbjct: 94 GFGGRSVQGKREVAAFFAHITHET 165
Score = 25.8 bits (50), Expect(5) = 2e-026
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 430 GFGATIRAINGALEC 474
>gb|CW204755.1|CW204755 104_632_11186715_116_37060_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186715, DNA
sequence
Length = 672
Score = 84.0 bits (177), Expect(2) = 4e-026
Identities = 29/50 (58%), Positives = 42/50 (84%)
Frame = +3 / -2
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMT 539
YYGRGP+Q++ +NY AGQ++ ++L+ +PD VA+DPVV+FKTA+W WMT
Sbjct: 197 YYGRGPLQISWNFNYGPAGQSIGVDLLENPDKVAQDPVVSFKTALWLWMT 48
Score = 58.3 bits (121), Expect(2) = 4e-026
Identities = 26/66 (39%), Positives = 35/66 (53%)
Frame = +3 / -1
Query: 108 VWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFGTTGDEQTRRRELAAFFG 287
V S++T F + S G+ FYT AF+ AA FP F G E +RE+AAFF
Sbjct: 564 VSSVVTEAFFDGIKSQAGNGCEGKNFYTRSAFVSAADAFPAFAHGGTEAEGKREIAAFFA 385
Query: 288 QTSHET 305
++ET
Sbjct: 384 HVTYET 367
>gb|CN133023.1|CN133023 OX1_9_D11.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_9_D11_A002 5', mRNA sequence
Length = 837
Score = 74.4 bits (156), Expect(5) = 8e-026
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +3 / +2
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 533
YYGRGP+Q++ YNY AG+ + + + +PD VA+D VVAFKTA+WFW
Sbjct: 548 YYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFW 691
Score = 33.6 bits (67), Expect(5) = 8e-026
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3 / +2
Query: 108 VWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFG 236
V ++T F S+ + G+ FYT AF+ AA + GFG
Sbjct: 266 VAGVVTDAFFNSIKNQAGNGCEGKNFYTRSAFLSAADAYKGFG 394
Score = 29.5 bits (58), Expect(5) = 8e-026
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3 / +2
Query: 678 GQSTDGAKDRVGYYKRYCDML 740
G++T RVGYY++YC L
Sbjct: 770 GKNTAQMNARVGYYRQYCQQL 832
Score = 27.2 bits (53), Expect(5) = 8e-026
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3 / +2
Query: 234 GTTGDEQTRRRELAAFFGQTSHET 305
G G +RE+AAFF +HET
Sbjct: 386 GFGGRSVQGKREIAAFFAHITHET 457
Score = 25.8 bits (50), Expect(5) = 8e-026
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +2
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 722 GFGATIRAINGALEC 766
>gb|BE918591.1|BE918591 OV1_8_G11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 618
Score = 74.4 bits (156), Expect(5) = 1e-025
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = +3 / +3
Query: 390 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 533
YYGRGP+Q++ YNY AG+ + + + +PD VA+D VVAFKTA+WFW
Sbjct: 327 YYGRGPLQISWNYNYGPAGRDIGFDGLRNPDRVAQDAVVAFKTALWFW 470
Score = 33.6 bits (67), Expect(5) = 1e-025
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3 / +3
Query: 108 VWSIITRPMFQSMLSHRGDSGCQGAFYTYDAFIEAASKFPGFG 236
V ++T F S+ + G+ FYT AF+ AA + GFG
Sbjct: 45 VAGVVTDAFFNSIKNQAGNGCEGKNFYTRSAFLSAADAYKGFG 173
Score = 29.0 bits (57), Expect(5) = 1e-025
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3 / +3
Query: 678 GQSTDGAKDRVGYYKRYCDMLRV 746
G++T RVGYY +YC L V
Sbjct: 549 GKNTAQMNARVGYYXQYCQQLGV 617
Score = 27.2 bits (53), Expect(5) = 1e-025
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3 / +3
Query: 234 GTTGDEQTRRRELAAFFGQTSHET 305
G G +RE+AAFF +HET
Sbjct: 165 GFGGRSVQGKREIAAFFAHITHET 236
Score = 25.8 bits (50), Expect(5) = 1e-025
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / +3
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 501 GFGATIRAINGALEC 545
>gb|CW056944.1|CW056944 104_298_10517953_114_30151 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517953, DNA
sequence
Length = 652
Score = 80.8 bits (170), Expect(4) = 8e-025
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +3 / -1
Query: 375 QTDPPYYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 536
Q YYGRGP+Q++ YNY AGQ++ + +GDPD VAR VVAF+ A+W+WM
Sbjct: 403 QAGKGYYGRGPLQISWNYNYGPAGQSIGFDGLGDPDAVARSAVVAFRAALWYWM 242
Score = 37.7 bits (76), Expect(4) = 8e-025
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3 / -1
Query: 678 GQSTDGAKDRVGYYKRYCDMLRVGYGDNVPC 770
G++ D DRV YYK++C V G N+ C
Sbjct: 160 GKNPDSVNDRVAYYKQFCQDFGVDPGSNLTC 68
Score = 30.4 bits (60), Expect(4) = 8e-025
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / -3
Query: 243 GDEQTRRRELAAFFGQTSHET 305
G +RE+AAFFG +HET
Sbjct: 650 GTVDDSKREIAAFFGNANHET 588
Score = 25.8 bits (50), Expect(4) = 8e-025
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 627 GYGLTSNIINGGLEC 671
G+G T ING LEC
Sbjct: 208 GFGATIRAINGALEC 164
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,123,037,937
Number of Sequences: 832831
Number of extensions: 16671004
Number of successful extensions: 158412
Number of sequences better than 1.0e-020: 117
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 33742523386
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)