TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCT19a08.yg.2.1
(645 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK100196.1|CK100196 C009P45.5pR Populus strain T89 leave... 109 2e-026
gb|DN492976.1|DN492976 X049G03.3pR Populus wood cDNA librar... 108 6e-026
gb|DN502989.1|DN502989 X049G03.5pR Populus wood cDNA librar... 108 6e-026
gb|DT514917.1|DT514917 WS02426.B21_C05 PTxD-ICC-N-A-14 Popu... 108 8e-026
gb|DT486514.1|DT486514 WS02531.B21_D05 PT-MB-N-A-15 Populus... 108 8e-026
gb|CV270892.1|CV270892 WS0153.B21_D16 PTxN-IB-A-6 Populus t... 108 8e-026
gb|CV281908.1|CV281908 WS0183.B21_D06 PTxD-IL-N-A-9 Populus... 103 1e-024
gb|DN503291.1|DN503291 X074H08.5pR Populus wood cDNA librar... 95 5e-024
gb|DN493269.1|DN493269 X074H08.3pR Populus wood cDNA librar... 95 5e-024
gb|CV227579.1|CV227579 WS0167.B21_J13 PT-DX-A-7 Populus tri... 110 8e-024
gb|CV245618.1|CV245618 WS0257.B21_O19 PT-MB-N-A-15 Populus ... 110 8e-024
gb|DT506655.1|DT506655 WS02416.BR_C14 PTxD-ICC-N-A-14 Popul... 110 8e-024
gb|DT511324.1|DT511324 WS02416.B21_C14 PTxD-ICC-N-A-14 Popu... 110 8e-024
gb|DT519122.1|DT519122 WS02440.B21_F15 PTxD-ICC-N-A-14 Popu... 110 8e-024
gb|DV463809.1|DV463809 MTUNUL1.P2.F09 NUL Populus fremontii... 110 8e-024
gb|CV249464.1|CV249464 WS01124.B21_D22 PT-P-FL-A-2 Populus ... 109 2e-023
gb|CV251513.1|CV251513 WS0117.B21_E21 PT-P-FL-A-2 Populus t... 109 2e-023
gb|AJ777287.1|AJ777287 AJ777287 Populus euphratica root 3-6... 107 6e-023
gb|DV464808.1|DV464808 MTUNUL1.P31.A09 NUL Populus fremonti... 107 8e-023
>gb|CK100196.1|CK100196 C009P45.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C009P45 5', mRNA sequence
Length = 576
Score = 109 bits (232), Expect(2) = 2e-026
Identities = 41/88 (46%), Positives = 60/88 (68%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L+ C+P E+G L + VFDV N L GP+P A ++K+E L++A N+ G VPE
Sbjct: 157 LNNELEGCLPYEIGKLNKAVVFDVGSNKLTGPIPHSFACLKKMEILNLAVNKFYGPVPEM 336
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C LPRL NL++SYN+FT P C +++
Sbjct: 337 VCDLPRLANLSLSYNYFTQVGPECRKLI 420
Score = 29.5 bits (58), Expect(2) = 2e-026
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2 / +1
Query: 290 RRNCLPNRPTQRTPQQCAAFYSQ 358
R NC+ + P QR+ CA F+S+
Sbjct: 442 RMNCILDLPRQRSAADCAKFFSK 510
>gb|DN492976.1|DN492976 X049G03.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X049G03 3', mRNA sequence
Length = 764
Score = 108 bits (230), Expect(2) = 6e-026
Identities = 41/88 (46%), Positives = 60/88 (68%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L+ C+P E+G L + VFDV N L GP+P A ++K+E L++A N+ G VPE
Sbjct: 648 LNNELEGCLPYEIGKLDKAVVFDVGSNKLTGPIPHSFACLKKMEILNLAVNKFYGPVPEM 469
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C LPRL NL++SYN+FT P C +++
Sbjct: 468 VCDLPRLANLSLSYNYFTQVGPECRKLI 385
Score = 29.0 bits (57), Expect(2) = 6e-026
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2 / -3
Query: 290 RRNCLPNRPTQRTPQQCAAFYSQ 358
R NC+ + P QR+ CA F+S+
Sbjct: 363 RMNCILDLPGQRSAADCAKFFSK 295
>gb|DN502989.1|DN502989 X049G03.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X049G03 5', mRNA sequence
Length = 646
Score = 108 bits (230), Expect(2) = 6e-026
Identities = 41/88 (46%), Positives = 60/88 (68%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L+ C+P E+G L + VFDV N L GP+P A ++K+E L++A N+ G VPE
Sbjct: 218 LNNELEGCLPYEIGKLDKAVVFDVGSNKLTGPIPHSFACLKKMEILNLAVNKFYGPVPEM 397
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C LPRL NL++SYN+FT P C +++
Sbjct: 398 VCDLPRLANLSLSYNYFTQVGPECRKLI 481
Score = 29.0 bits (57), Expect(2) = 6e-026
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2 / +2
Query: 290 RRNCLPNRPTQRTPQQCAAFYSQ 358
R NC+ + P QR+ CA F+S+
Sbjct: 503 RMNCILDLPGQRSAPDCAKFFSK 571
>gb|DT514917.1|DT514917 WS02426.B21_C05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_C05 3', mRNA sequence
Length = 897
Score = 108 bits (230), Expect(2) = 8e-026
Identities = 41/88 (46%), Positives = 60/88 (68%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L+ C+P E+G L + VFDV N L GP+P A ++K+E L++A N+ G VPE
Sbjct: 684 LNNELEGCLPYEIGKLDKTVVFDVGSNKLTGPIPHSFACLKKMEILNLAVNKFYGPVPEM 505
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C LPRL NL++SYN+FT P C +++
Sbjct: 504 VCDLPRLANLSLSYNYFTQVGPECRKLI 421
Score = 28.6 bits (56), Expect(2) = 8e-026
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2 / -1
Query: 290 RRNCLPNRPTQRTPQQCAAFYS 355
R NC+ + P QR+ CA F+S
Sbjct: 399 RMNCILDLPGQRSAADCAKFFS 334
>gb|DT486514.1|DT486514 WS02531.B21_D05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02531_D05 3', mRNA sequence
Length = 808
Score = 108 bits (230), Expect(2) = 8e-026
Identities = 41/88 (46%), Positives = 60/88 (68%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L+ C+P E+G L + VFDV N L GP+P A ++K+E L++A N+ G VPE
Sbjct: 710 LNNELEGCLPYEIGKLDKTVVFDVGSNKLTGPIPHSFACLKKMEILNLAVNKFYGPVPEM 531
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C LPRL NL++SYN+FT P C +++
Sbjct: 530 VCDLPRLANLSLSYNYFTQVGPECRKLI 447
Score = 28.6 bits (56), Expect(2) = 8e-026
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2 / -3
Query: 290 RRNCLPNRPTQRTPQQCAAFYS 355
R NC+ + P QR+ CA F+S
Sbjct: 425 RMNCILDLPGQRSAADCAKFFS 360
>gb|CV270892.1|CV270892 WS0153.B21_D16 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_D16 3', mRNA sequence
Length = 727
Score = 108 bits (230), Expect(2) = 8e-026
Identities = 41/88 (46%), Positives = 60/88 (68%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L+ C+P E+G L + VFDV N L GP+P A ++K+E L++A N+ G VPE
Sbjct: 688 LNNELEGCLPYEIGKLDKTVVFDVGSNKLTGPIPHSFACLKKMEILNLAVNKFYGPVPEM 509
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C LPRL NL++SYN+FT P C +++
Sbjct: 508 VCDLPRLANLSLSYNYFTQVGPECRKLI 425
Score = 28.6 bits (56), Expect(2) = 8e-026
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2 / -1
Query: 290 RRNCLPNRPTQRTPQQCAAFYS 355
R NC+ + P QR+ CA F+S
Sbjct: 403 RMNCILDLPGQRSAADCAKFFS 338
>gb|CV281908.1|CV281908 WS0183.B21_D06 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0183_D06 3', mRNA sequence
Length = 826
Score = 103 bits (220), Expect(2) = 1e-024
Identities = 40/88 (45%), Positives = 59/88 (67%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L+ C+P E+G L + VFDV N L GP+P A ++K+E L++A N+ G VPE
Sbjct: 706 LNNELEGCLPYEIGKLDKTVVFDVGSNKLTGPIPHSFACLKKMEILNLAVNKFYGPVPEM 527
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C LPRL NL++S N+FT P C +++
Sbjct: 526 VCDLPRLANLSLSDNYFTQVGPECRKLI 443
Score = 29.0 bits (57), Expect(2) = 1e-024
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2 / -1
Query: 290 RRNCLPNRPTQRTPQQCAAFYSQ 358
R NC+ + P QR+ CA F+S+
Sbjct: 421 RMNCILDLPGQRSAADCAEFFSK 353
>gb|DN503291.1|DN503291 X074H08.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X074H08 5', mRNA sequence
Length = 615
Score = 95.5 bits (202), Expect(2) = 5e-024
Identities = 39/86 (45%), Positives = 57/86 (66%)
Frame = +2 / +1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
+N L C+P E+G LR++ +FD S N L GPLP + + K+EQ ++A N L G VPE +
Sbjct: 4 HNLLTGCLPYELGFLRKLVLFDASNNFLTGPLPCSLGCLAKLEQFNLASNLLYGQVPEVV 183
Query: 194 CALPRLKNLTISYNFFTGEPPSCARV 271
CAL +L NL++S N+FT P C ++
Sbjct: 184 CALGKLVNLSLSSNYFTKLGPKCTKL 261
Score = 35.4 bits (71), Expect(2) = 5e-024
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2 / +1
Query: 290 RRNCLPNRPTQRTPQQCAAF 349
R+NC+P+ P QR+ ++CAAF
Sbjct: 286 RKNCIPDLPGQRSARECAAF 345
>gb|DN493269.1|DN493269 X074H08.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X074H08 3', mRNA sequence
Length = 603
Score = 95.5 bits (202), Expect(2) = 5e-024
Identities = 39/86 (45%), Positives = 57/86 (66%)
Frame = +2 / -1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
+N L C+P E+G LR++ +FD S N L GPLP + + K+EQ ++A N L G VPE +
Sbjct: 600 HNLLTGCLPYELGFLRKLVLFDASNNFLTGPLPCSLGCLAKLEQFNLASNLLYGQVPEVV 421
Query: 194 CALPRLKNLTISYNFFTGEPPSCARV 271
CAL +L NL++S N+FT P C ++
Sbjct: 420 CALGKLVNLSLSSNYFTKLGPKCTKL 343
Score = 35.4 bits (71), Expect(2) = 5e-024
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2 / -1
Query: 290 RRNCLPNRPTQRTPQQCAAF 349
R+NC+P+ P QR+ ++CAAF
Sbjct: 318 RKNCIPDLPGQRSARECAAF 259
>gb|CV227579.1|CV227579 WS0167.B21_J13 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_J13
3', mRNA sequence
Length = 871
Score = 110 bits (235), Expect = 8e-024
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL E+ V DVSFNSL+G LP ++ + ++E L++AHN+LSG VPE
Sbjct: 572 LNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPEL 393
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
+C+L L NLT++ NFF+G CA++
Sbjct: 392 VCSLRSLVNLTVASNFFSGFSQDCAKL 312
>gb|CV245618.1|CV245618 WS0257.B21_O19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_O19 3', mRNA sequence
Length = 878
Score = 110 bits (235), Expect = 8e-024
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL E+ V DVSFNSL+G LP ++ + ++E L++AHN+LSG VPE
Sbjct: 606 LNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPEL 427
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
+C+L L NLT++ NFF+G CA++
Sbjct: 426 VCSLRSLVNLTVASNFFSGFSQDCAKL 346
>gb|DT506655.1|DT506655 WS02416.BR_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_C14 5', mRNA sequence
Length = 837
Score = 110 bits (235), Expect = 8e-024
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL E+ V DVSFNSL+G LP ++ + ++E L++AHN+LSG VPE
Sbjct: 325 LNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPEL 504
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
+C+L L NLT++ NFF+G CA++
Sbjct: 505 VCSLRSLVNLTVASNFFSGFSQDCAKL 585
>gb|DT511324.1|DT511324 WS02416.B21_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_C14 3', mRNA sequence
Length = 886
Score = 110 bits (235), Expect = 8e-024
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL E+ V DVSFNSL+G LP ++ + ++E L++AHN+LSG VPE
Sbjct: 562 LNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPEL 383
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
+C+L L NLT++ NFF+G CA++
Sbjct: 382 VCSLRSLVNLTVASNFFSGFSQDCAKL 302
>gb|DT519122.1|DT519122 WS02440.B21_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_F15 3', mRNA sequence
Length = 886
Score = 110 bits (235), Expect = 8e-024
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +2 / -1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL E+ V DVSFNSL+G LP ++ + ++E L++AHN+LSG VPE
Sbjct: 562 LNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPEL 383
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
+C+L L NLT++ NFF+G CA++
Sbjct: 382 VCSLRSLVNLTVASNFFSGFSQDCAKL 302
>gb|DV463809.1|DV463809 MTUNUL1.P2.F09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 740
Score = 110 bits (235), Expect = 8e-024
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL E+ V DVSFNSL+G LP ++ + ++E L++AHN+LSG VPE
Sbjct: 378 LNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPEL 199
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
+C+L L NLT++ NFF+G CA++
Sbjct: 198 VCSLRSLVNLTVASNFFSGFSQDCAKL 118
>gb|CV249464.1|CV249464 WS01124.B21_D22 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_D22 3', mRNA sequence
Length = 657
Score = 109 bits (233), Expect = 2e-023
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL E+ V DVSFNSL+G LP ++ + ++E L++AHN+LSG VPE
Sbjct: 578 LNNQLTGCIPQGVGLFTEMQVSDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPEL 399
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
+C+L L NLT++ NFF+G CA++
Sbjct: 398 VCSLRSLVNLTVASNFFSGFSQDCAKL 318
>gb|CV251513.1|CV251513 WS0117.B21_E21 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_E21 3', mRNA sequence
Length = 568
Score = 109 bits (233), Expect = 2e-023
Identities = 43/86 (50%), Positives = 61/86 (70%)
Frame = +2 / -2
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
NN L C+P VGL E+ V DVSFNSL+G LP ++ + ++E L++AHN+LSG VPE +
Sbjct: 567 NNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPELV 388
Query: 194 CALPRLKNLTISYNFFTGEPPSCARV 271
C+L L NLT++ NFF+G CA++
Sbjct: 387 CSLRSLVNLTVASNFFSGFSQDCAKL 310
>gb|AJ777287.1|AJ777287 AJ777287 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400025G06F1, mRNA sequence
Length = 644
Score = 107 bits (229), Expect = 6e-023
Identities = 40/77 (51%), Positives = 55/77 (71%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
IN L C+PPEVG L ++ V DVS N +VGP+P ++G+ +EQL++AHN ++G VP+
Sbjct: 413 INTNLTGCLPPEVGYLYKLRVLDVSQNKIVGPIPYSLSGLAHLEQLNLAHNLMTGIVPQG 592
Query: 191 ICALPRLKNLTISYNFF 241
+C LP L N T SYNFF
Sbjct: 593 VCILPNLANFTFSYNFF 643
>gb|DV464808.1|DV464808 MTUNUL1.P31.A09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 867
Score = 107 bits (228), Expect = 8e-023
Identities = 41/88 (46%), Positives = 59/88 (67%)
Frame = +2 / +3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L+ C+P E+G L + VFDV N L GP+P A + K+E L++A N+ G VPE
Sbjct: 576 LNNELEGCLPYEIGKLDKTVVFDVGSNKLTGPIPHSFACLXKMEILNLAVNKFYGPVPEM 755
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVV 274
+C LPRL NL++SYN+FT P C +++
Sbjct: 756 VCDLPRLANLSLSYNYFTXVGPECRKLI 839
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 196,527,577
Number of Sequences: 369679
Number of extensions: 2230393
Number of successful extensions: 30997
Number of sequences better than 1.0e-020: 20
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7978729217
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)