TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN28g01.yg.2.1
(513 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 69 8e-028
gb|AJ776261.1|AJ776261 AJ776261 Populus euphratica root 3-6... 107 6e-023
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 68.9 bits (144), Expect(4) = 8e-028
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = -1 / +2
Query: 495 LRLLLTVKESAMDVPTNLDARRRISFFANSLFMSMPDAPKVRQMLPF 355
L LLLT+K+SA +VP N++ARRR+ FF NSLFM +P VR+ML F
Sbjct: 18611 LYLLLTIKDSAANVPKNIEARRRLQFFTNSLFMDLPAPKPVREMLSF 18751
Score = 63.4 bits (132), Expect(4) = 8e-028
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = -1 / +1
Query: 354 SVLTPYYKEDVLFSSQALAEQNEDGVSILFYLQKIYP 244
SV TPYY E VL+S L ++NEDG+S LFYLQKIYP
Sbjct: 18838 SVFTPYYSEIVLYSMNELQKKNEDGISTLFYLQKIYP 18948
Score = 36.8 bits (74), Expect(4) = 8e-028
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1 / +2
Query: 165 QLRLWASYRGQTLTRT 118
+LR+WASYRGQTL RT
Sbjct: 20309 ELRIWASYRGQTLART 20356
Score = 31.3 bits (62), Expect(4) = 8e-028
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1 / +2
Query: 243 DEWKNFLERVHCE 205
DEWKNFL+R+ C+
Sbjct: 20222 DEWKNFLDRIGCD 20260
>gb|AJ776261.1|AJ776261 AJ776261 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400011A11F1, mRNA sequence
Length = 451
Score = 107 bits (228), Expect = 6e-023
Identities = 44/74 (59%), Positives = 56/74 (75%)
Frame = -1 / +2
Query: 495 LRLLLTVKESAMDVPTNLDARRRISFFANSLFMSMPDAPKVRQMLPFSVLTPYYKEDVLF 316
L LLLT+K+SA +VP N++ARRR+ FF NSLFM +P VR+ML FSV TPYY E VL+
Sbjct: 227 LYLLLTIKDSAANVPKNIEARRRLQFFTNSLFMDLPAPKPVREMLSFSVFTPYYSEIVLY 406
Query: 315 SSQALAEQNEDGVS 274
S L ++NEDG+S
Sbjct: 407 SMNELQKKNEDGIS 448
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 257,350,808
Number of Sequences: 369679
Number of extensions: 3596722
Number of successful extensions: 69648
Number of sequences better than 1.0e-020: 2
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 5824961821
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)