TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCN28g01.yg.2.1
         (513 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC149540.1|  Populus trichocarpa clone Pop1-111J19, compl...    69   8e-028
gb|AJ776261.1|AJ776261  AJ776261 Populus euphratica root 3-6...   107   6e-023
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
          Length = 96953

 Score = 68.9 bits (144), Expect(4) = 8e-028
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = -1 / +2

                                                            
Query: 495   LRLLLTVKESAMDVPTNLDARRRISFFANSLFMSMPDAPKVRQMLPF 355
             L LLLT+K+SA +VP N++ARRR+ FF NSLFM +P    VR+ML F
Sbjct: 18611 LYLLLTIKDSAANVPKNIEARRRLQFFTNSLFMDLPAPKPVREMLSF 18751

 Score = 63.4 bits (132), Expect(4) = 8e-028
 Identities = 25/37 (67%), Positives = 29/37 (78%)
 Frame = -1 / +1

                                                  
Query: 354   SVLTPYYKEDVLFSSQALAEQNEDGVSILFYLQKIYP 244
             SV TPYY E VL+S   L ++NEDG+S LFYLQKIYP
Sbjct: 18838 SVFTPYYSEIVLYSMNELQKKNEDGISTLFYLQKIYP 18948

 Score = 36.8 bits (74), Expect(4) = 8e-028
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = -1 / +2

                             
Query: 165   QLRLWASYRGQTLTRT 118
             +LR+WASYRGQTL RT
Sbjct: 20309 ELRIWASYRGQTLART 20356

 Score = 31.3 bits (62), Expect(4) = 8e-028
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1 / +2

                          
Query: 243   DEWKNFLERVHCE 205
             DEWKNFL+R+ C+
Sbjct: 20222 DEWKNFLDRIGCD 20260
>gb|AJ776261.1|AJ776261 AJ776261 Populus euphratica root 3-6 months Populus euphratica cDNA
           clone P0000400011A11F1, mRNA sequence
          Length = 451

 Score =  107 bits (228), Expect = 6e-023
 Identities = 44/74 (59%), Positives = 56/74 (75%)
 Frame = -1 / +2

                                                                       
Query: 495 LRLLLTVKESAMDVPTNLDARRRISFFANSLFMSMPDAPKVRQMLPFSVLTPYYKEDVLF 316
           L LLLT+K+SA +VP N++ARRR+ FF NSLFM +P    VR+ML FSV TPYY E VL+
Sbjct: 227 LYLLLTIKDSAANVPKNIEARRRLQFFTNSLFMDLPAPKPVREMLSFSVFTPYYSEIVLY 406

                         
Query: 315 SSQALAEQNEDGVS 274
           S   L ++NEDG+S
Sbjct: 407 SMNELQKKNEDGIS 448
  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 257,350,808
Number of Sequences: 369679
Number of extensions: 3596722
Number of successful extensions: 69648
Number of sequences better than 1.0e-020: 2
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 5824961821
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)