TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21e10.yg.2.1
(247 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI166257.1|AI166257 xylem.est.107 Poplar xylem Lambda ZA... 186 3e-047
gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus t... 186 3e-047
gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus t... 140 1e-041
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 114 2e-034
gb|CA821982.1|CA821982 R02C12 two-month-old roots from clon... 113 3e-025
gb|BP925807.1|BP925807 BP925807 full-length enriched poplar... 101 7e-022
gb|AJ778682.1|AJ778682 AJ778682 Populus euphratica cambium ... 90 4e-018
gb|BP924307.1|BP924307 BP924307 full-length enriched poplar... 85 7e-017
gb|AJ776836.1|AJ776836 AJ776836 Populus euphratica root 3-6... 60 4e-009
gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus tr... 46 4e-005
gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6... 40 0.004
gb|CX169892.1|CX169892 D01_69-11_07.ab1 leaf inoculated wit... 34 0.19
gb|CK088705.1|CK088705 A067P37.3pR Hybrid aspen plasmid lib... 27 1.8
gb|BI129325.1|BI129325 G089P15Y Populus cambium cDNA librar... 31 1.8
gb|BU815574.1|BU815574 N043E09 Populus bark cDNA library Po... 31 1.8
gb|CN523703.1|CN523703 GQ015M06.T3_C06 GQ015 Populus tricho... 31 1.8
gb|DN488863.1|DN488863 S041H01.3pR Populus imbibed seed cDN... 31 1.8
gb|DN498588.1|DN498588 S041H01.5pR Populus imbibed seed cDN... 31 1.8
gb|CA926462.1|CA926462 MTU6CR.P15.C09 Aspen root cDNA Libra... 30 2.4
gb|BP923133.1|BP923133 BP923133 full-length enriched poplar... 30 2.4
gb|CK109989.1|CK109989 N051E03 Populus bark cDNA library Po... 29 4.6
gb|CK110150.1|CK110150 N053E03 Populus bark cDNA library Po... 29 4.6
gb|AJ768979.1|AJ768979 AJ768979 Populus euphratica leaf adu... 29 4.6
gb|CV268482.1|CV268482 WS0205.B21_J20 PTxN-IB-N-A-11 Populu... 29 4.6
gb|DN485930.1|DN485930 N053E03.3pR Populus bark cDNA librar... 29 4.6
gb|DN495463.1|DN495463 N053E03.5pR Populus bark cDNA librar... 29 4.6
gb|BU809586.1|BU809586 UL59TF04 Populus leaf cDNA library P... 23 6.0
gb|CV241209.1|CV241209 WS02511.B21_I12 PT-MB-N-A-15 Populus... 27 6.0
gb|DN500511.1|DN500511 UL59TF04.5pR Populus cold stressed l... 23 6.0
gb|DN495398.1|DN495398 N041G09.5pR Populus bark cDNA librar... 23 6.1
gb|BU875318.1|BU875318 V005C08 Populus flower cDNA library ... 29 6.3
gb|BU875319.1|BU875319 V005C09 Populus flower cDNA library ... 29 6.3
gb|BU882932.1|BU882932 UM84TB07 Populus flower cDNA library... 29 6.3
gb|CK107448.1|CK107448 UB57BPH11.5pR Populus active cambium... 29 6.3
gb|CV131022.1|CV131022 L1P03e09 Populus stem seasonal libra... 29 6.3
gb|BU836667.1|BU836667 T089D09 Populus apical shoot cDNA li... 25 7.0
gb|BI128268.1|BI128268 G073P42Y Populus cambium cDNA librar... 27 8.4
gb|AC149431.1| Populus trichocarpa clone Pop1-124P06, compl... 29 8.7
gb|BI068893.1|BI068893 C028P68U Populus strain T89 leaves P... 29 8.7
gb|BU814318.1|BU814318 N027G08 Populus bark cDNA library Po... 29 8.7
gb|CA824512.1|CA824512 R43G03 two-month-old roots from clon... 29 8.7
gb|CF230838.1|CF230838 PtaC0013H5H0515 Poplar cDNA library ... 29 8.7
gb|CK102959.1|CK102959 G097P24.5pR Populus tension wood cDN... 29 8.7
gb|CN520704.1|CN520704 GQ0105.B3_G18 GQ010 Populus trichoca... 29 8.7
gb|CN550367.1|CN550367 GQ0241.B3_E23 GQ024 Populus trichoca... 29 8.7
gb|AJ779167.1|AJ779167 AJ779167 Populus euphratica cambium ... 29 8.7
gb|CV236481.1|CV236481 WS01224.B21.1_E15 PT-GT-FL-A-3 Popul... 29 8.7
gb|CV236731.1|CV236731 WS01225.B21.1_D08 PT-GT-FL-A-3 Popul... 29 8.7
gb|CV236742.1|CV236742 WS01225.B21.1_E08 PT-GT-FL-A-3 Popul... 29 8.7
gb|CV240591.1|CV240591 WS0251.B21_M23 PT-MB-N-A-15 Populus ... 29 8.7
gb|CV277393.1|CV277393 WS0143.B21_H14 PTxD-IL-A-5 Populus t... 29 8.7
gb|CX169834.1|CX169834 G02_69-100_14.ab1 leaf inoculated wi... 29 8.7
gb|CX172043.1|CX172043 A08_69-122_02.ab1 leaf inoculated wi... 29 8.7
gb|CX177017.1|CX177017 F09_69-88_11.ab1 leaf inoculated wit... 29 8.7
gb|CX177588.1|CX177588 G11_45-54_13.ab1 leaf inoculated wit... 29 8.7
gb|DT477016.1|DT477016 WS01231.B21_K15 PT-GT-FL-A-3 Populus... 29 8.7
gb|DT493602.1|DT493602 WS0111.BR_N20 PT-P-FL-A-2 Populus tr... 29 8.7
gb|DT514323.1|DT514323 WS02424.B21_I01 PTxD-ICC-N-A-14 Popu... 29 8.7
gb|DT516817.1|DT516817 WS02432.B21_H24 PTxD-ICC-N-A-14 Popu... 29 8.7
gb|DT522559.1|DT522559 WS02037.B21_F06 PTxN-IB-N-A-11 Popul... 29 8.7
gb|CV240513.1|CV240513 WS0251.B21_J09 PT-MB-N-A-15 Populus ... 24 9.6
gb|BU813953.1|BU813953 N023A11 Populus bark cDNA library Po... 27 9.7
>gb|AI166257.1|AI166257 xylem.est.107 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 583
Score = 186 bits (400), Expect = 3e-047
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = -2 / +2
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFNSTLREGNVTHHEY+QVGKGRDVGLNQIS+FEAKIANGNGEQTLSRDIYRLGHRFDF
Sbjct: 20 AGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRLGHRFDF 199
Query: 66 FRMLSCYYTTIGFYFST 16
FRMLSCY+TT+GFYFST
Sbjct: 200 FRMLSCYFTTVGFYFST 250
Score = 98.2 bits (208), Expect = 9e-021
Identities = 48/78 (61%), Positives = 52/78 (66%)
Frame = +2 / -2
Query: 14 QVLK*KPIVV**QDSILXXXXXXXXXXXXXLSVCSPLPFAIFASNRDI*LRPTSLPLPTC 193
+VLK*KP VV *QDSI L VCSP P AI ASN +I*LRPTSLP PTC
Sbjct: 252 RVLK*KPTVVK*QDSIRKKSKRCPSRYISRLKVCSPFPLAILASNIEI*LRPTSLPFPTC 73
Query: 194 MYSW*VTLPSRNVELNPA 247
+YS VT PSR+VEL PA
Sbjct: 72 IYS*WVTFPSRSVELKPA 19
Score = 97.3 bits (206), Expect = 2e-020
Identities = 39/81 (48%), Positives = 57/81 (70%)
Frame = -1 / +1
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*F 68
CR+QF+ R+CY *I+ SW+ + C QS+ V*G++S W+WR + E *++PA + L*
Sbjct: 19 CRLQFYTT*RECYPS*IYTSWEGERCGPQSDFYV*GQNS*WKWRADFES*YIPAWTPL*L 198
Query: 67 LQDAVLLLHNNWFLLQYLPGR 5
+AVLLLH++WFLLQ+ R
Sbjct: 199 FPNAVLLLHHSWFLLQHSDNR 261
Score = 86.3 bits (182), Expect = 4e-017
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = +1 / -1
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVF 201
EV+TNC V RQH E++KA++ PV +T Q L +I+I Y LK R LIE +I NL++F
Sbjct: 244 EVKTNCGEVARQHSEKVKAVSKPVYITTQSLLSISISYFGLKHRNLIEAHISPLPNLYIF 65
Query: 202 MVSNIAFAQCGIES 243
M+ NI F C IE+
Sbjct: 64 MMGNIPFT*CRIEA 23
Score = 67.0 bits (140), Expect = 2e-011
Identities = 36/73 (49%), Positives = 43/73 (58%)
Frame = -3 / +3
Query: 239 SIPHCAKAMLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALISSG 60
SI H K ML MN KL + M SI++LCLR +* M M ++ * V TG AL S
Sbjct: 27 SILHYVKGMLPIMNIYKLGRGEMWASIRFLCLRPK*LMEMESRL*VVIYTGLDTALTFSE 206
Query: 59 CCLVTTQQLVSTS 21
CCL T+ QLV TS
Sbjct: 207 CCLATSPQLVFTS 245
Score = 47.8 bits (98), Expect = 1e-005
Identities = 33/73 (45%), Positives = 38/73 (52%)
Frame = +3 / -3
Query: 21 *SRNQLLCSNKTAS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEIFD*DLHPFLCQLACI 200
*S+NQL S+KTA ++QS AG H S H H L PQT D* H QL I
Sbjct: 245 *SKNQLW*SSKTAFGKSQSGVQAGIYHDSKSALHFH*LFWPQT*KSD*GPHLSPSQLVYI 66
Query: 201 HGE*HCLRAMWN* 239
H *H L + N*
Sbjct: 65 HDG*HSLHVV*N* 27
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 5', mRNA sequence
Length = 908
Score = 186 bits (400), Expect = 3e-047
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = -2 / +2
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFNSTLREGNVTHHEY+QVGKGRDVGLNQIS+FEAKIANGNGEQTLSRDIYRLGHRFDF
Sbjct: 548 AGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRLGHRFDF 727
Query: 66 FRMLSCYYTTIGFYFST 16
FRMLSCY+TT+GFYFST
Sbjct: 728 FRMLSCYFTTVGFYFST 778
Score = 98.2 bits (208), Expect = 9e-021
Identities = 48/78 (61%), Positives = 52/78 (66%)
Frame = +2 / -3
Query: 14 QVLK*KPIVV**QDSILXXXXXXXXXXXXXLSVCSPLPFAIFASNRDI*LRPTSLPLPTC 193
+VLK*KP VV *QDSI L VCSP P AI ASN +I*LRPTSLP PTC
Sbjct: 780 RVLK*KPTVVK*QDSIRKKSKRCPSRYISRLKVCSPFPLAILASNIEI*LRPTSLPFPTC 601
Query: 194 MYSW*VTLPSRNVELNPA 247
+YS VT PSR+VEL PA
Sbjct: 600 IYS*WVTFPSRSVELKPA 547
Score = 97.3 bits (206), Expect = 2e-020
Identities = 39/81 (48%), Positives = 57/81 (70%)
Frame = -1 / +1
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*F 68
CR+QF+ R+CY *I+ SW+ + C QS+ V*G++S W+WR + E *++PA + L*
Sbjct: 547 CRLQFYTT*RECYPS*IYTSWEGERCGPQSDFYV*GQNS*WKWRADFES*YIPAWTPL*L 726
Query: 67 LQDAVLLLHNNWFLLQYLPGR 5
+AVLLLH++WFLLQ+ R
Sbjct: 727 FPNAVLLLHHSWFLLQHSDNR 789
Score = 86.3 bits (182), Expect = 4e-017
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = +1 / -2
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVF 201
EV+TNC V RQH E++KA++ PV +T Q L +I+I Y LK R LIE +I NL++F
Sbjct: 772 EVKTNCGEVARQHSEKVKAVSKPVYITTQSLLSISISYFGLKHRNLIEAHISPLPNLYIF 593
Query: 202 MVSNIAFAQCGIES 243
M+ NI F C IE+
Sbjct: 592 MMGNIPFT*CRIEA 551
Score = 67.0 bits (140), Expect = 2e-011
Identities = 36/73 (49%), Positives = 43/73 (58%)
Frame = -3 / +3
Query: 239 SIPHCAKAMLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALISSG 60
SI H K ML MN KL + M SI++LCLR +* M M ++ * V TG AL S
Sbjct: 555 SILHYVKGMLPIMNIYKLGRGEMWASIRFLCLRPK*LMEMESRL*VVIYTGLDTALTFSE 734
Query: 59 CCLVTTQQLVSTS 21
CCL T+ QLV TS
Sbjct: 735 CCLATSPQLVFTS 773
Score = 47.8 bits (98), Expect = 1e-005
Identities = 33/73 (45%), Positives = 38/73 (52%)
Frame = +3 / -1
Query: 21 *SRNQLLCSNKTAS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEIFD*DLHPFLCQLACI 200
*S+NQL S+KTA ++QS AG H S H H L PQT D* H QL I
Sbjct: 773 *SKNQLW*SSKTAFGKSQSGVQAGIYHDSKSALHFH*LFWPQT*KSD*GPHLSPSQLVYI 594
Query: 201 HGE*HCLRAMWN* 239
H *H L + N*
Sbjct: 593 HDG*HSLHVV*N* 555
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 5', mRNA sequence
Length = 872
Score = 140 bits (300), Expect(2) = 1e-041
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = -2 / +3
Query: 192 QVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
Q GKGRDVGLNQIS+FEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCY+TT+GFYFST
Sbjct: 600 QFGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYFTTVGFYFST 776
Score = 71.6 bits (150), Expect(2) = 9e-015
Identities = 29/61 (47%), Positives = 43/61 (70%)
Frame = -1 / +2
Query: 187 WQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*FLQDAVLLLHNNWFLLQYLPG 8
W+ + C QS+ V*G++S W+WR + E *++PA + L* +AVLLLH++WFLLQ+
Sbjct: 605 WEGERCGPQSDFYV*GQNS*WKWRADFES*YIPAWTPL*LFPNAVLLLHHSWFLLQHSDN 784
Query: 7 R 5
R
Sbjct: 785 R 787
Score = 67.0 bits (140), Expect(2) = 2e-014
Identities = 34/58 (58%), Positives = 36/58 (62%)
Frame = +2 / -2
Query: 14 QVLK*KPIVV**QDSILXXXXXXXXXXXXXLSVCSPLPFAIFASNRDI*LRPTSLPLP 187
+VLK*KP VV *QDSI L VCSP P AI ASN +I*LRPTSLP P
Sbjct: 778 RVLK*KPTVVK*QDSIRKKSKRCPSRYISRLKVCSPFPLAILASNIEI*LRPTSLPFP 605
Score = 63.4 bits (132), Expect = 3e-010
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = +1 / -1
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVF 201
EV+TNC V RQH E++KA++ PV +T Q L +I+I Y LK R LIE +I L F
Sbjct: 770 EVKTNCGEVARQHSEKVKAVSKPVYITTQSLLSISISYFGLKHRNLIEAHISPLPKLGNF 591
Score = 51.5 bits (106), Expect = 1e-006
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = -3 / +1
Query: 188 LAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALISSGCCLVTTQQLVSTS 21
L + M SI++LCLR +* M M ++ * V TG AL S CCL T+ QLV TS
Sbjct: 604 LGRGEMWASIRFLCLRPK*LMEMESRL*VVIYTGLDTALTFSECCLATSPQLVFTS 771
Score = 46.4 bits (95), Expect(2) = 1e-041
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = -2 / +2
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVG 166
AGFNSTLREGNVTHHE V +G G
Sbjct: 545 AGFNSTLREGNVTHHENXPVWEGERCG 625
Score = 37.3 bits (75), Expect = 0.021
Identities = 24/51 (47%), Positives = 28/51 (54%)
Frame = +3 / -3
Query: 21 *SRNQLLCSNKTAS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEIFD*DLH 173
*S+NQL S+KTA ++QS AG H S H H L PQT D* H
Sbjct: 771 *SKNQLW*SSKTAFGKSQSGVQAGIYHDSKSALHFH*LFWPQT*KSD*GPH 619
Score = 28.1 bits (55), Expect(2) = 2e-014
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2 / -3
Query: 167 PTSLPLPTCMYSW*VTLPSRNVELNPA 247
P P T +S VT PSR+VEL PA
Sbjct: 624 PHLSPSQTGXFS*WVTFPSRSVELKPA 544
Score = 24.4 bits (47), Expect(2) = 9e-015
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1 / +1
Query: 247 CRIQFHIARRQCY 209
CR+QF+ R+CY
Sbjct: 544 CRLQFYTT*RECY 582
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 114 bits (243), Expect(2) = 2e-034
Identities = 42/60 (70%), Positives = 53/60 (88%)
Frame = -2 / +1
Query: 195 MQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
++VGKGRDVGLNQI++FE K++ GNGEQ LSRD+YRLG FDFFRM+S Y+TT+G+YF T
Sbjct: 26011 LKVGKGRDVGLNQIAVFEGKVSGGNGEQVLSRDVYRLGQLFDFFRMMSFYFTTVGYYFCT 26190
Score = 49.2 bits (101), Expect(2) = 1e-008
Identities = 29/58 (50%), Positives = 29/58 (50%)
Frame = +2 / -1
Query: 17 VLK*KPIVV**QDSILXXXXXXXXXXXXXLSVCSPLPFAIFASNRDI*LRPTSLPLPT 190
V K* P VV * D I L CSPLP F SN I*LRPTS PLPT
Sbjct: 26189 VQK*YPTVVK*NDIIRKKSKSCPSL*TSLLRTCSPLPPETFPSNTAI*LRPTSRPLPT 26016
Score = 49.2 bits (101), Expect(2) = 2e-034
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = -2 / +2
Query: 246 AGFNSTLREGNVTHHEYMQV 187
AGFNSTLR+GNVTHHEY+QV
Sbjct: 25889 AGFNSTLRQGNVTHHEYIQV 25948
Score = 46.4 bits (95), Expect = 4e-005
Identities = 25/58 (43%), Positives = 32/58 (55%)
Frame = +1 / -3
Query: 19 TEVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANL 192
T+V ++ V H +EIK + PVD+ + L I L K YLIET I SFANL
Sbjct: 26187 TKVVSHGGKVE*HHSKEIKKLPEPVDIPTKNLLTITTRNLPFKYSYLIETNISSFANL 26014
Score = 27.2 bits (53), Expect(2) = 1e-008
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2 / -3
Query: 188 TCMYSW*VTLPSRNVELNPA 247
T +YS VT P R VELNPA
Sbjct: 25947 T*IYS*WVTFPWRRVELNPA 25888
Score = 25.8 bits (50), Expect(2) = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1 / +3
Query: 187 WQRKGCRSQSNISV*GKDSKWQW 119
WQR C SQS+ +* + W W
Sbjct: 26019 WQRTRCWSQSDSCI*REGFWW*W 26087
Score = 22.1 bits (42), Expect(2) = 1.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -1 / +1
Query: 247 CRIQFHIARRQCY 209
CR+QF+ R+C+
Sbjct: 25888 CRVQFNSTPRKCH 25926
>gb|CA821982.1|CA821982 R02C12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 291
Score = 113 bits (241), Expect = 3e-025
Identities = 46/69 (66%), Positives = 52/69 (75%)
Frame = -2 / +2
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFN+TLR+G HEY+QVGKGRDVGLNQI+LFE K+A GNGEQ LSRD+YRLG FD
Sbjct: 80 AGFNTTLRQGKYYSHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDVYRLGQLFDS 259
Query: 66 FRMLSCYYT 40
YT
Sbjct: 260 SECFLSLYT 286
Score = 58.8 bits (122), Expect = 7e-009
Identities = 27/48 (56%), Positives = 28/48 (58%)
Frame = +2 / -1
Query: 104 LSVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNPA 247
L CSP P A F S R I PTSLP PT +YSW P NV LNPA
Sbjct: 222 LRTCSPFPPATFPSKRAIWFNPTSLPFPT*IYSWE*YFPCLNVVLNPA 79
Score = 43.7 bits (89), Expect = 2e-004
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1 / -3
Query: 70 IKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVFMVSNIAFAQCGIESC 246
IK + PV + A L AI+ C+ K+ L+ + S +NL++FM QCG++ C
Sbjct: 256 IK*LPKPVHIPA*NLLAISSCHFPFKKGNLV*PNVSSLSNLNIFMGVIFPLPQCGVKPC 80
Score = 35.4 bits (71), Expect = 0.074
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = -1 / +1
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*F 68
CR+ HI R+ P*I++ W+ K + + * + + +WR +++ + A +++*F
Sbjct: 79 CRV*HHIEAREILLP*IYSGWKGKRRWVKPDCPF*RESGRRKWRASSKQGCVQAWATI*F 258
Query: 67 LQDAVLLLH 41
+ LH
Sbjct: 259 FRMLSFSLH 285
>gb|BP925807.1|BP925807 BP925807 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-050_P13.f 5', mRNA sequence
Length = 365
Score = 101 bits (216), Expect = 7e-022
Identities = 39/55 (70%), Positives = 46/55 (83%)
Frame = -2 / +1
Query: 180 GRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
G DVGLNQI+LFE ++A GNGEQ LSRD+YRLG FDFFRMLS Y+TT+G+Y T
Sbjct: 16 GGDVGLNQIALFEGRVAGGNGEQVLSRDVYRLGQLFDFFRMLSFYFTTVGYYVCT 180
Score = 36.3 bits (73), Expect = 0.039
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1 / -3
Query: 40 CVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLI 162
C V R+H EEIK + PV + A L AI+ C+ K+ L+
Sbjct: 156 CKVERKHSEEIK*LPKPVHIPA*NLLAISSCHSPFKKGNLV 34
Score = 35.9 bits (72), Expect = 0.054
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = +2 / -1
Query: 32 PIVV**QDSILXXXXXXXXXXXXXLSVCSPLPFAIFASNRDI*LRPTSLPL 184
P VV *++SIL L CSP P A S R I PTS P+
Sbjct: 164 PTVVK*KESILKKSNSCPSLYTSLLRTCSPFPPATLPSKRAIWFNPTSPPV 12
Score = 27.2 bits (53), Expect(2) = 0.72
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -1 / +3
Query: 124 QWRTNAEP*HLPARSSL*FLQDAVLLLHN 38
+WR +++ + A +++*FLQ+A LL+N
Sbjct: 72 KWRASSKQGCVQAWATI*FLQNAFFLLYN 158
Score = 19.9 bits (37), Expect(2) = 0.72
Identities = 5/13 (38%), Positives = 11/13 (84%)
Frame = -1 / +2
Query: 55 VLLLHNNWFLLQY 17
+LL+H++W L++
Sbjct: 299 LLLMHSSWSRLEF 337
>gb|AJ778682.1|AJ778682 AJ778682 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600004F02F1, mRNA sequence
Length = 135
Score = 89.5 bits (189), Expect = 4e-018
Identities = 36/43 (83%), Positives = 39/43 (90%)
Frame = -2 / +3
Query: 180 GRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLS 52
GRDVG+N IS FEAK+ANGNGEQTLSRD+YRLG RFDF RMLS
Sbjct: 3 GRDVGMNHISSFEAKVANGNGEQTLSRDVYRLGGRFDFHRMLS 131
Score = 44.6 bits (91), Expect = 1e-004
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1 / -2
Query: 55 QHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYI 174
+HP E+K +++TA+ L +I IC LCLK+ Y+I +I
Sbjct: 128 EHPMEVKTAPQSINITAKCLLSIPICNLCLKR*YMIHPHI 9
Score = 43.7 bits (89), Expect = 2e-004
Identities = 19/26 (73%), Positives = 19/26 (73%)
Frame = +2 / -3
Query: 104 LSVCSPLPFAIFASNRDI*LRPTSLP 181
LSVCSP PFA FAS DI* PTS P
Sbjct: 79 LSVCSPFPFATFASKDDI*FIPTSRP 2
Score = 32.7 bits (65), Expect = 0.50
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1 / +2
Query: 172 CRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*FLQDAVL 50
C +S I *GK KW+WR + P* L * DA++
Sbjct: 11 CGDESYIIF*GKGCKWEWRADT*P*CLSTGGPF*LP*DALI 133
>gb|BP924307.1|BP924307 BP924307 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_I23.f 5', mRNA sequence
Length = 342
Score = 85.4 bits (180), Expect = 7e-017
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = -2 / +1
Query: 165 LNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
+NQI+LFE K+A GNGEQ LS D+YRLG DFFRMLS Y+TT+G+Y T
Sbjct: 4 VNQIALFEGKVA*GNGEQVLSSDVYRLGQLLDFFRMLSFYFTTVGYYVCT 153
Score = 35.9 bits (72), Expect = 0.054
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1 / -1
Query: 40 CVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLI 162
C V R+H EEI+ + PV + A L AI+ C+ K+ L+
Sbjct: 129 CKVERKHSEEIQ*LPKPVHIAA*NLLAISSCHFPFKKGNLV 7
Score = 32.2 bits (64), Expect = 0.68
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2 / -2
Query: 32 PIVV**QDSILXXXXXXXXXXXXXLSVCSPLPFAIFASNRDI 157
P VV *++SIL L CSP P A F S R I
Sbjct: 137 PTVVK*KESILKKSNSCPSLYTSLLRTCSPFPHATFPSKRAI 12
Score = 24.9 bits (48), Expect(2) = 0.67
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1 / +3
Query: 124 QWRTNAEP*HLPARSSL*FLQDAVLLLHN 38
+WR +++ + A +++ FLQ+A LL+N
Sbjct: 45 KWRASSKQRCVQAWATIGFLQNAFFLLYN 131
Score = 22.1 bits (42), Expect(2) = 0.67
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1 / +2
Query: 55 VLLLHNNWFLLQYLPGRP 2
+LL+H++W L++L P
Sbjct: 272 LLLMHSSWSRLEFLLQSP 325
>gb|AJ776836.1|AJ776836 AJ776836 Populus euphratica root 3-6 months Populus euphratica
cDNA clone P0000400019B12F1, mRNA sequence
Length = 342
Score = 59.7 bits (124), Expect = 4e-009
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = -2 / +2
Query: 96 IYRLGHRFDFFRMLSCYYTTIGFYFST 16
+YRLG RFDF+RMLS YYTT+GFYFS+
Sbjct: 2 VYRLGRRFDFYRMLSFYYTTVGFYFSS 82
Score = 37.7 bits (76), Expect = 0.015
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1 / -3
Query: 19 TEVETNCCVVTRQHPEEIK 75
TE+ETNCC+V +HP E+K
Sbjct: 79 TEIETNCCIVE*EHPIEVK 23
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
5', mRNA sequence
Length = 599
Score = 46.4 bits (95), Expect = 4e-005
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = -2 / +2
Query: 246 AGFNSTLREGNVTHHEYM 193
AGFNSTLREGNVTHHEY+
Sbjct: 545 AGFNSTLREGNVTHHEYI 598
>gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6 months Populus euphratica
cDNA clone P0000400015B12F1, mRNA sequence
Length = 468
Score = 39.6 bits (80), Expect = 0.004
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -2 / +3
Query: 60 MLSCYYTTIGFYFST 16
MLSCY+TTIGFYFST
Sbjct: 6 MLSCYFTTIGFYFST 50
Score = 34.1 bits (68), Expect = 0.19
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1 / +2
Query: 61 DAVLLLHNNWFLLQY 17
D V+LLH+NWFL QY
Sbjct: 5 DVVMLLHHNWFLFQY 49
>gb|CX169892.1|CX169892 D01_69-11_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 736
Score = 34.1 bits (68), Expect = 0.19
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3 / -2
Query: 69 NQSDDLAGRCHGSAFVRHCHLLSLPQTEI 155
+QS +L G+C F+ HLL PQ EI
Sbjct: 720 HQSIELLGKCRDLGFLHGAHLLEFPQVEI 634
>gb|CK088705.1|CK088705 A067P37.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A067P37 3', mRNA sequence
Length = 491
Score = 27.2 bits (53), Expect(2) = 1.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3 / +3
Query: 62 GCCLVTTQQLVSTSVPA 12
GCC+VTT LV+ P+
Sbjct: 336 GCCIVTTMGLVTVCFPS 386
Score = 18.9 bits (35), Expect(2) = 1.8
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -2 / +1
Query: 93 YRLGHRFDFFR 61
YR H F F+R
Sbjct: 211 YRKPHTFSFYR 243
>gb|BI129325.1|BI129325 G089P15Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 529
Score = 30.9 bits (61), Expect = 1.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1 / +3
Query: 223 RRQCYSP*IHASWQRKGC 170
RR+C+S ++ SWQ KGC
Sbjct: 201 RRECWSLGLNTSWQPKGC 254
>gb|BU815574.1|BU815574 N043E09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 466
Score = 30.9 bits (61), Expect = 1.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3 / +2
Query: 123 CHLLSLPQTEIFD*DLHPFLCQLAC 197
CHLL+ + D + HPF C+++C
Sbjct: 134 CHLLACHRWAATDANNHPFFCRISC 208
>gb|CN523703.1|CN523703 GQ015M06.T3_C06 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M06_C06 5', mRNA sequence
Length = 789
Score = 30.9 bits (61), Expect = 1.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1 / +3
Query: 223 RRQCYSP*IHASWQRKGC 170
RR+C+S ++ SWQ KGC
Sbjct: 483 RRECWSLGLNTSWQPKGC 536
>gb|DN488863.1|DN488863 S041H01.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S041H01 3', mRNA sequence
Length = 472
Score = 30.9 bits (61), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1 / +1
Query: 115 FAIAICYLCLKQRYLIETYIPSFANLHVFMVSNIAF 222
F I + +LCLKQ ++ S A L +F S AF
Sbjct: 301 FGIKLSFLCLKQASFLDLITSSPAGLFLFFTSIAAF 408
>gb|DN498588.1|DN498588 S041H01.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S041H01 5', mRNA sequence
Length = 618
Score = 30.9 bits (61), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1 / -1
Query: 115 FAIAICYLCLKQRYLIETYIPSFANLHVFMVSNIAF 222
F I + +LCLKQ ++ S A L +F S AF
Sbjct: 171 FGIKLSFLCLKQASFLDLITSSPAGLFLFFTSIAAF 64
>gb|CA926462.1|CA926462 MTU6CR.P15.C09 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 137
Score = 30.4 bits (60), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3 / -3
Query: 24 SRNQLLCSNKTAS*RNQSDDLAGRCHGSAFV 116
SRN ++C + T RN++ A R HGS F+
Sbjct: 96 SRNLIICHSLTMLSRNENSVDADRNHGSIFI 4
>gb|BP923133.1|BP923133 BP923133 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-016_B12.f 5', mRNA sequence
Length = 547
Score = 30.4 bits (60), Expect = 2.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1 / -2
Query: 34 NCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCL 144
N C+VT+Q P P D+ + A+C LCL
Sbjct: 270 NSCIVTKQEPPNAS*KCEPHDIRSLPYSPPALCKLCL 160
>gb|CK109989.1|CK109989 N051E03 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N051E03 5', mRNA sequence
Length = 860
Score = 29.5 bits (58), Expect = 4.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / -2
Query: 75 FDFFRMLSCYYTTIGFYFST 16
FDFF++L+ TT F FST
Sbjct: 607 FDFFKLLNMLSTTTSFLFST 548
>gb|CK110150.1|CK110150 N053E03 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N053E03 5', mRNA sequence
Length = 891
Score = 29.5 bits (58), Expect = 4.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / -2
Query: 75 FDFFRMLSCYYTTIGFYFST 16
FDFF++L+ TT F FST
Sbjct: 608 FDFFKLLNMLSTTTSFLFST 549
>gb|AJ768979.1|AJ768979 AJ768979 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100024A02F1, mRNA sequence
Length = 654
Score = 29.5 bits (58), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1 / -1
Query: 97 VTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVFMVS 210
V Q L IC++ R LIET+IP LH+ ++
Sbjct: 615 VPLQSLQGCCICWIIEGPRCLIETFIPEPLPLHLEQIT 502
>gb|CV268482.1|CV268482 WS0205.B21_J20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_J20 3', mRNA sequence
Length = 401
Score = 29.5 bits (58), Expect = 4.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3 / +1
Query: 57 AS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEI 155
+S*RN+ L +C G H H + P+TEI
Sbjct: 175 SS*RNKQT*LVFKCTGKQHYTHAHSQAKPRTEI 273
>gb|DN485930.1|DN485930 N053E03.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N053E03 3', mRNA sequence
Length = 866
Score = 29.5 bits (58), Expect = 4.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / +3
Query: 75 FDFFRMLSCYYTTIGFYFST 16
FDFF++L+ TT F FST
Sbjct: 288 FDFFKLLNMLSTTTSFLFST 347
>gb|DN495463.1|DN495463 N053E03.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N053E03 5', mRNA sequence
Length = 627
Score = 29.5 bits (58), Expect = 4.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / -2
Query: 75 FDFFRMLSCYYTTIGFYFST 16
FDFF++L+ TT F FST
Sbjct: 611 FDFFKLLNTLSTTTSFLFST 552
>gb|BU809586.1|BU809586 UL59TF04 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 509
Score = 23.1 bits (44), Expect(2) = 6.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1 / -3
Query: 37 CCVVTRQHPEEIKAMT*PVDVTAQRLFAIAIC 132
CC I +T PVD+ +R+F + C
Sbjct: 432 CCPFYTYSISIIMRVTKPVDIMPKRIFPPSSC 337
Score = 21.2 bits (40), Expect(2) = 6.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2 / -1
Query: 164 RPTSLPLPTCMYSW 205
R S P P M+SW
Sbjct: 197 RSDSFPCPDSMHSW 156
>gb|CV241209.1|CV241209 WS02511.B21_I12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_I12 3', mRNA sequence
Length = 703
Score = 26.7 bits (52), Expect(2) = 6.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -2 / -2
Query: 165 LNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
+N + + +K + GE+ + + L H F FF++L +++ IGF T
Sbjct: 213 MNILYHYGSKGVSEFGEEHV*IHFFILNHVFFFFKVLFEWFSWIGFLCKT 64
Score = 18.0 bits (33), Expect(2) = 6.0
Identities = 7/23 (30%), Positives = 11/23 (47%)
Frame = -1 / -3
Query: 223 RRQCYSP*IHASWQRKGCRSQSN 155
RR+ Y P + CR+ S+
Sbjct: 485 RRRAYDPASRGEGHEQWCRTFSS 417
>gb|DN500511.1|DN500511 UL59TF04.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL59TF04 5',
mRNA sequence
Length = 513
Score = 23.1 bits (44), Expect(2) = 6.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1 / -3
Query: 37 CCVVTRQHPEEIKAMT*PVDVTAQRLFAIAIC 132
CC I +T PVD+ +R+F + C
Sbjct: 433 CCPFYTYSISIIMRVTKPVDIMPKRIFPPSSC 338
Score = 21.2 bits (40), Expect(2) = 6.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2 / -1
Query: 164 RPTSLPLPTCMYSW 205
R S P P M+SW
Sbjct: 198 RSDSFPCPDSMHSW 157
>gb|DN495398.1|DN495398 N041G09.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N041G09 5', mRNA sequence
Length = 715
Score = 23.1 bits (44), Expect(2) = 6.1
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +1 / -1
Query: 130 CYLCLKQRYL 159
C+LCLK +Y+
Sbjct: 463 CFLCLKSKYV 434
Score = 21.7 bits (41), Expect(2) = 6.1
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 19 TEVETNCCVV 48
TE+E+ CCV+
Sbjct: 669 TEIESCCCVI 640
>gb|BU875318.1|BU875318 V005C08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 389
Score = 29.0 bits (57), Expect = 6.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / -3
Query: 171 HPFLCQLACIH 203
HPFLCQ CIH
Sbjct: 114 HPFLCQKLCIH 82
>gb|BU875319.1|BU875319 V005C09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 401
Score = 29.0 bits (57), Expect = 6.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / -2
Query: 171 HPFLCQLACIH 203
HPFLCQ CIH
Sbjct: 145 HPFLCQKLCIH 113
>gb|BU882932.1|BU882932 UM84TB07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 587
Score = 29.0 bits (57), Expect = 6.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1 / +3
Query: 133 YLCLKQRYLIETYIPSFANLHVFMVSNIAFAQCG 234
YLC++ +E + SF+ LH+ +A A+ G
Sbjct: 9 YLCVRDLKTLEDFCSSFSLLHLMRTRRMAAAKVG 110
>gb|CK107448.1|CK107448 UB57BPH11.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB57BPH11 5', mRNA sequence
Length = 145
Score = 29.0 bits (57), Expect = 6.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3 / -2
Query: 39 LCSNKTAS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEI 155
+C+ +S*RN+ L +C G H H + P+T+I
Sbjct: 144 ICNIFASS*RNK*T*LVFKCTGKQHYTHAHSQAKPRTDI 28
>gb|CV131022.1|CV131022 L1P03e09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 852
Score = 29.0 bits (57), Expect = 6.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1 / +3
Query: 193 ASWQRKGCRSQSNISV*GKDSKWQWR 116
AS Q KGCR S + + G++S +W+
Sbjct: 156 ASVQGKGCRWWSKLDISGQNSSHRWK 233
>gb|BU836667.1|BU836667 T089D09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 326
Score = 25.4 bits (49), Expect(2) = 7.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2 / -2
Query: 128 FAIFASNRDI*LRPTSLPLP 187
F+I AS + L PTS PLP
Sbjct: 235 FSILASRANQYLNPTSTPLP 176
Score = 18.0 bits (33), Expect(2) = 7.0
Identities = 5/7 (71%), Positives = 6/7 (85%)
Frame = +3 / -1
Query: 201 HGE*HCL 221
HG+ HCL
Sbjct: 86 HGQHHCL 66
>gb|BI128268.1|BI128268 G073P42Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 534
Score = 26.7 bits (52), Expect(2) = 8.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2 / +2
Query: 125 PFAIFASNRDI*LRPTSLPLPTC 193
P + D+ RPTS PLP C
Sbjct: 392 PANVGCQEHDVCRRPTSWPLPNC 460
Score = 17.1 bits (31), Expect(2) = 8.4
Identities = 4/10 (40%), Positives = 7/10 (70%)
Frame = +1 / +2
Query: 34 NCCVVTRQHP 63
+CC ++HP
Sbjct: 53 HCC*AIQRHP 82
>gb|AC149431.1| Populus trichocarpa clone Pop1-124P06, complete sequence
Length = 85101
Score = 28.6 bits (56), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1 / -2
Query: 31 TNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCL 144
TNC R H + + +T V + A+ L + +C LCL
Sbjct: 60527 TNCT*NNRIHLKSEQIITISVLLLARELLIVLVCLLCL 60414
>gb|BI068893.1|BI068893 C028P68U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 300
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / +1
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 136 RECWSLGLNTSWQPKGC 186
>gb|BU814318.1|BU814318 N027G08 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 576
Score = 28.6 bits (56), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3 / +1
Query: 174 PFLCQLACIHGE*HCL 221
PF CQ C+ G+ HC+
Sbjct: 448 PFPCQCQCLQGQFHCI 495
>gb|CA824512.1|CA824512 R43G03 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 594
Score = 28.6 bits (56), Expect = 8.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3 / -1
Query: 59 CCLVTTQQLVSTSVPA 12
CCLV T +V+T+VPA
Sbjct: 429 CCLVLTTSVVATAVPA 382
>gb|CF230838.1|CF230838 PtaC0013H5H0515 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / +2
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 14 RECWSLGLNTSWQPKGC 64
>gb|CK102959.1|CK102959 G097P24.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G097P24 5', mRNA sequence
Length = 578
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / +2
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 347 RECWSLGLNTSWQPKGC 397
>gb|CN520704.1|CN520704 GQ0105.B3_G18 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_G18 5', mRNA sequence
Length = 808
Score = 28.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3 / +1
Query: 3 GRPGRY*SRNQLLCSNKTAS*RNQSDDLAGRCH 101
GRPGR +NQ S K A +D CH
Sbjct: 577 GRPGRVKRKNQKAASKKAAGGDGDEEDEE*ACH 675
>gb|CN550367.1|CN550367 GQ0241.B3_E23 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_E23 5', mRNA sequence
Length = 267
Score = 28.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3 / +2
Query: 3 GRPGRY*SRNQLLCSNKTAS*RNQSDDLAGRCH 101
GRPGR +NQ S K A +D CH
Sbjct: 26 GRPGRVKRKNQKAASKKAAGGDGDEEDEE*ACH 124
>gb|AJ779167.1|AJ779167 AJ779167 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600012F10F1, mRNA sequence
Length = 545
Score = 28.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3 / +1
Query: 3 GRPGRY*SRNQLLCSNKTAS*RNQSDDLAGRCH 101
GRPGR +NQ S K A +D CH
Sbjct: 442 GRPGRVKRKNQKAASKKAAGGDGDEEDEE*ACH 540
>gb|CV236481.1|CV236481 WS01224.B21.1_E15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01224_E15 3', mRNA sequence
Length = 870
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / -2
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 833 RECWSLGLNTSWQPKGC 783
>gb|CV236731.1|CV236731 WS01225.B21.1_D08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_D08 3', mRNA sequence
Length = 864
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / -2
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 833 RECWSLGLNTSWQPKGC 783
>gb|CV236742.1|CV236742 WS01225.B21.1_E08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_E08 3', mRNA sequence
Length = 835
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / -1
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 811 RECWSLGLNTSWQPKGC 761
>gb|CV240591.1|CV240591 WS0251.B21_M23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_M23 3', mRNA sequence
Length = 880
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / -3
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 809 RECWSLGLNTSWQPKGC 759
>gb|CV277393.1|CV277393 WS0143.B21_H14 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0143_H14 3', mRNA sequence
Length = 866
Score = 28.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3 / -2
Query: 3 GRPGRY*SRNQLLCSNKTAS*RNQSDDLAGRCH 101
GRPGR +NQ S K A +D CH
Sbjct: 739 GRPGRVKRKNQKAASKKAAGGDGDEEDEE*ACH 641
>gb|CX169834.1|CX169834 G02_69-100_14.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 608
Score = 28.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3 / -1
Query: 3 GRPGRY*SRNQLLCSNKTAS*RNQSDDLAGRCH 101
GRPGR +NQ S K A +D CH
Sbjct: 329 GRPGRVKRKNQKAASKKAAGGDGDEEDEE*ACH 231
>gb|CX172043.1|CX172043 A08_69-122_02.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 753
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / +2
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 143 RECWSLGLNTSWQPKGC 193
>gb|CX177017.1|CX177017 F09_69-88_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 613
Score = 28.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3 / +3
Query: 3 GRPGRY*SRNQLLCSNKTAS*RNQSDDLAGRCH 101
GRPGR +NQ S K A +D CH
Sbjct: 504 GRPGRVKRKNQKAASKKAAGGDGDEEDEE*ACH 602
>gb|CX177588.1|CX177588 G11_45-54_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 701
Score = 28.6 bits (56), Expect = 8.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3 / -3
Query: 59 CCLVTTQQLVSTSVPA 12
CCLV T +V+T+VPA
Sbjct: 456 CCLVLTTSVVATAVPA 409
>gb|DT477016.1|DT477016 WS01231.B21_K15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_K15 3', mRNA sequence
Length = 844
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / -3
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 833 RECWSLGLNTSWQPKGC 783
>gb|DT493602.1|DT493602 WS0111.BR_N20 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N20
5', mRNA sequence
Length = 664
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / +1
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 457 RECWSLGLNTSWQPKGC 507
>gb|DT514323.1|DT514323 WS02424.B21_I01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_I01 3', mRNA sequence
Length = 818
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / -3
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 816 RECWSLGLNTSWQPKGC 766
>gb|DT516817.1|DT516817 WS02432.B21_H24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02432_H24 3', mRNA sequence
Length = 871
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / -1
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 790 RECWSLGLNTSWQPKGC 740
>gb|DT522559.1|DT522559 WS02037.B21_F06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02037_F06 3', mRNA sequence
Length = 808
Score = 28.6 bits (56), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1 / -2
Query: 220 RQCYSP*IHASWQRKGC 170
R+C+S ++ SWQ KGC
Sbjct: 756 RECWSLGLNTSWQPKGC 706
>gb|CV240513.1|CV240513 WS0251.B21_J09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_J09 3', mRNA sequence
Length = 858
Score = 23.5 bits (45), Expect(2) = 9.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1 / +1
Query: 196 HASWQRKGCRSQSNISV*GK 137
H ++ KGC+S+ + +*GK
Sbjct: 658 HRTFAYKGCQSRKRLVL*GK 717
Score = 20.8 bits (39), Expect(2) = 9.6
Identities = 5/9 (55%), Positives = 9/9 (100%)
Frame = -1 / +1
Query: 229 IARRQCYSP 203
++RR+CY+P
Sbjct: 265 VSRRKCYTP 291
>gb|BU813953.1|BU813953 N023A11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 629
Score = 26.7 bits (52), Expect(2) = 9.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2 / +1
Query: 125 PFAIFASNRDI*LRPTSLPLPTC 193
P + D+ RPTS PLP C
Sbjct: 466 PANVGCQEHDVCRRPTSWPLPNC 534
Score = 17.1 bits (31), Expect(2) = 9.7
Identities = 4/10 (40%), Positives = 7/10 (70%)
Frame = +1 / +1
Query: 34 NCCVVTRQHP 63
+CC ++HP
Sbjct: 127 HCC*AIQRHP 156
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 130,689,588
Number of Sequences: 369679
Number of extensions: 1493911
Number of successful extensions: 154669
Number of sequences better than 10.0: 68
length of database: 67,802,888
effective HSP length: 47
effective length of database: 50,427,975
effective search space used: 1714551150
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)