TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21b10.yg.2.1
(574 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN493538.1|DN493538 C044P02.5pR Populus strain T89 leave... 287 4e-077
gb|AJ778206.1|AJ778206 AJ778206 Populus euphratica root 3-6... 231 3e-060
gb|CK088334.1|CK088334 A048P19.3pR Hybrid aspen plasmid lib... 228 2e-059
gb|CV277661.1|CV277661 WS0144.B21_D09 PTxD-IL-A-5 Populus t... 199 2e-050
gb|CV237411.1|CV237411 WS01227.B21.1_N22 PT-GT-FL-A-3 Popul... 183 6e-046
gb|BI072933.1|BI072933 C090P65U Populus strain T89 leaves P... 171 7e-044
gb|CV274094.1|CV274094 WS0172.B21_C23 PTxD-NR-A-8 Populus t... 100 8e-043
gb|CN519694.1|CN519694 GQ0104.B3_A15 GQ010 Populus trichoca... 96 7e-038
gb|BI127543.1|BI127543 G062P08Y Populus cambium cDNA librar... 152 1e-036
gb|CV232041.1|CV232041 WS0196.B21_F15 PT-DX-N-A-10 Populus ... 130 8e-030
gb|CV244505.1|CV244505 WS0254.B21_N14 PT-MB-N-A-15 Populus ... 100 3e-025
gb|DT473521.1|DT473521 WS01229.BR_O05 PT-GT-FL-A-3 Populus ... 81 2e-024
gb|DT476527.1|DT476527 WS01229.B21_O05 PT-GT-FL-A-3 Populus... 81 1e-021
>gb|DN493538.1|DN493538 C044P02.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C044P02 5', mRNA sequence
Length = 598
Score = 287 bits (621), Expect = 4e-077
Identities = 114/168 (67%), Positives = 136/168 (80%)
Frame = +3 / +1
Query: 27 ARFFVALNSRKEVNVMLKKEAEYFGDIVILPFIDRYELVVLKTIAICEYGVQNLTAANIM 206
ARFFVALN RKE+NV LKKEAEYFGDIVI+P++D YELVVLKT+AICEYGV+ + A IM
Sbjct: 91 ARFFVALNGRKEINVDLKKEAEYFGDIVIVPYMDNYELVVLKTVAICEYGVRTVDAKYIM 270
Query: 207 KCDDDTFVRVDVVLRRIKLNNGDKPLYMGNLNLLHRPLRTGKWAVTDEEWPEDIYPPYAN 386
KCDDDTFVRVD +++ K GD LY+GN+N H+PLR GKWAVT EEWPE+ YPPYAN
Sbjct: 271 KCDDDTFVRVDAMIKEAKKVRGDGSLYIGNINYYHKPLRNGKWAVTYEEWPEEEYPPYAN 450
Query: 387 GPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWVEKFNSTXXVXY 530
GPGY+IS D+A FIV++ + LF MEDVSMG+WVEKFN++ V Y
Sbjct: 451 GPGYIISCDVANFIVAEFESHKLRLFKMEDVSMGMWVEKFNNSKPVEY 594
Score = 181 bits (390), Expect = 3e-045
Identities = 92/171 (53%), Positives = 106/171 (61%)
Frame = -1 / -3
Query: 529 YXTXXVELNFSTHRPMLTSSIXNSXXL*LARCDTMNFAMSPEIT*PGPFAYXXXXXXXXX 350
Y T LNFSTH PMLTSSI N+ L*L+ T+ FA S E+ *PGPFA
Sbjct: 593 YSTGFELLNFSTHIPMLTSSILNNLNL*LSNSATIKFATSHEMM*PGPFA*GGYSSSGHS 414
Query: 349 XSVTAHFPVLNGLCRRLRFPIYNGLSPLFNLMRLRTTSTLTNVSSSHFMMFAAVKFWTPY 170
VTAH P+ GL L FP+Y SP L STLT VSSSHFM++ A TPY
Sbjct: 413 SYVTAHLPLRKGLW**LMFPMYRLPSPRTFFASLIMASTLTKVSSSHFMIYFASTVRTPY 234
Query: 169 SQIAIVLRTTSS*RSINGKMTMSPKYSASFFNITLTSFLEFSATKNRAPAY 17
SQIA V +TTSS* S+ G +T+SPKYSASFF T SFL F+ATKNRA +
Sbjct: 233 SQIATVFKTTSS*LSM*GTITISPKYSASFFRSTFISFLPFNATKNRATIF 81
Score = 131 bits (280), Expect = 4e-030
Identities = 59/161 (36%), Positives = 95/161 (59%)
Frame = -3 / -2
Query: 509 IELLDP*AHAYIFHLKQSXXLIGTL*HDEFCYVTRNHIAWSVCIWRVDILRPLLVCNCPF 330
+EL P +HA++FHLK S + L +++ VT N +AW++CI + P L+C+ PF
Sbjct: 573 VELFHPHSHAHVFHLK*SQLVTLKLSYNKIRNVT*NDVAWTICIGWILFFWPFLICHSPF 394
Query: 329 SSPQWSVQEVKVPHI*WFVTIVQLDASQNYIYSHKCIIVTFHDVCSSQVLDPILTDSNCL 150
+ Q V V V ++* ++ L + I+S+K II+T HD+ DPI TDSN L
Sbjct: 393 TITQGLVVVVNVSNV*ASISPHFLRFLDHGIHSNKSIIITLHDILCIHCTDPIFTDSNSL 214
Query: 149 KNNQLIAVYKWQNDNVSKVFCFFLQHYIDLLPRIQCNKESS 27
++N+ I ++ N+N++K+ CFF ++ L IQC K+ S
Sbjct: 213 QDNKFIVIHVRNNNNITKILCFFF*VHVYFLSSIQCYKKPS 91
>gb|AJ778206.1|AJ778206 AJ778206 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400040H01F1, mRNA sequence
Length = 682
Score = 231 bits (499), Expect = 3e-060
Identities = 92/146 (63%), Positives = 116/146 (79%)
Frame = +3 / +3
Query: 27 ARFFVALNSRKEVNVMLKKEAEYFGDIVILPFIDRYELVVLKTIAICEYGVQNLTAANIM 206
ARFFVAL++RKEVN+ LKKEAE+FGDIVI+P++D Y+LVVLKT+AICEYGV+ + A IM
Sbjct: 240 ARFFVALHARKEVNLELKKEAEFFGDIVIVPYMDNYDLVVLKTVAICEYGVRTVRAKYIM 419
Query: 207 KCDDDTFVRVDVVLRRIKLNNGDKPLYMGNLNLLHRPLRTGKWAVTDEEWPEDIYPPYAN 386
K DDDTFVRVD ++ + + LY+GN+N H+PLR GKWAVT EEWPE+ YPPYAN
Sbjct: 420 KGDDDTFVRVDSIMDEVNEIPAGRSLYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYAN 599
Query: 387 GPGYVISGDIAKFIVSQRANQXXXLF 464
GPGY++S DI +FIVS+ + LF
Sbjct: 600 GPGYILSSDIGRFIVSEFESHKLRLF 677
Score = 125 bits (268), Expect = 2e-028
Identities = 70/151 (46%), Positives = 83/151 (54%)
Frame = -1 / -1
Query: 469 IXNSXXL*LARCDTMNFAMSPEIT*PGPFAYXXXXXXXXXXSVTAHFPVLNGLCRRLRFP 290
I N+ L*L+ +TM MS + *PGPFA VTAH P GL FP
Sbjct: 682 ILNNLNL*LSNSETMKRPMSEDKM*PGPFA*GG*SSSGHSSYVTAHLPYRRGLW**FMFP 503
Query: 289 IYNGLSPLFNLMRLRTTSTLTNVSSSHFMMFAAVKFWTPYSQIAIVLRTTSS*RSINGKM 110
+Y L + STLTNVSSS FM++ A TPYSQ+A V TT S* S+ G +
Sbjct: 502 MYKLLPAGISFTSSIMESTLTNVSSSPFMIYFARTVRTPYSQMATVFNTTRS*LSM*GTI 323
Query: 109 TMSPKYSASFFNITLTSFLEFSATKNRAPAY 17
T+SPK SASFFN TSF SATK RA +
Sbjct: 322 TISPKNSASFFNSKFTSFRACSATKKRATTF 230
>gb|CK088334.1|CK088334 A048P19.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A048P19 3', mRNA sequence
Length = 803
Score = 228 bits (493), Expect = 2e-059
Identities = 90/128 (70%), Positives = 102/128 (79%)
Frame = +3 / -1
Query: 174 GVQNLTAANIMKCDDDTFVRVDVVLRRIKLNNGDKPLYMGNLNLLHRPLRTGKWAVTDEE 353
GVQN++AA IMKCDDDTFVRVD VL+ I + K LYMGNLNLLHRPLR GKWAVT EE
Sbjct: 773 GVQNVSAAYIMKCDDDTFVRVDTVLKEIDRTSPSKSLYMGNLNLLHRPLRNGKWAVTFEE 594
Query: 354 WPEDIYPPYANGPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWVEKFNSTXXVXYS 533
WPE +YPPYANGPGYVIS DIAKF+++Q Q LF MEDVSMG+WVE+FNS+ V YS
Sbjct: 593 WPEAVYPPYANGPGYVISTDIAKFVIAQHGKQSLRLFKMEDVSMGMWVEQFNSSTPVQYS 414
Query: 534 HSWKXXXY 557
H+WK Y
Sbjct: 413 HNWKFCQY 390
Score = 118 bits (252), Expect = 3e-026
Identities = 63/128 (49%), Positives = 70/128 (54%)
Frame = -1 / +1
Query: 556 YXXXFQLXEYXTXXVELNFSTHRPMLTSSIXNSXXL*LARCDTMNFAMSPEIT*PGPFAY 377
Y FQL EY T LN STH P+LTSSI S L L N A+S EIT PGP A
Sbjct: 391 Y*QNFQLWEYWTGVELLNCSTHIPILTSSILKSLRLCLPC*AMTNLAISVEITYPGPLA* 570
Query: 376 XXXXXXXXXXSVTAHFPVLNGLCRRLRFPIYNGLSPLFNLMRLRTTSTLTNVSSSHFMMF 197
VTAH P L G C RLR PI + L + +T STLTNVSSSHF+M+
Sbjct: 571 GGYTASGHSSKVTAHLPFLRGRCNRLRLPI*SDLDGEVRSISFKTVSTLTNVSSSHFIMY 750
Query: 196 AAVKFWTP 173
AA F TP
Sbjct: 751 AADTF*TP 774
>gb|CV277661.1|CV277661 WS0144.B21_D09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0144_D09 3', mRNA sequence
Length = 877
Score = 199 bits (428), Expect = 2e-050
Identities = 78/126 (61%), Positives = 95/126 (75%)
Frame = +3 / -3
Query: 168 EYGVQNLTAANIMKCDDDTFVRVDVVLRRIKLNNGDKPLYMGNLNLLHRPLRTGKWAVTD 347
EYGV+ + A IMKCDDDTFVRVD +++ K GD LY+GN+N H+PLR GKWAVT
Sbjct: 875 EYGVRTVDAKYIMKCDDDTFVRVDAMIKEAKKVRGDGSLYIGNINYYHKPLRNGKWAVTY 696
Query: 348 EEWPEDIYPPYANGPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWVEKFNSTXXVX 527
EEWPE+ YPPYANGPGY+IS D+A FIV++ + LF MEDVSMG+WVEKFN++ V
Sbjct: 695 EEWPEEEYPPYANGPGYIISCDVADFIVAEFESHKLRLFKMEDVSMGMWVEKFNNSKPVE 516
Query: 528 YSHSWK 545
Y HS K
Sbjct: 515 YIHSLK 498
Score = 113 bits (241), Expect = 1e-024
Identities = 61/126 (48%), Positives = 70/126 (55%)
Frame = -1 / +1
Query: 544 FQLXEYXTXXVELNFSTHRPMLTSSIXNSXXL*LARCDTMNFAMSPEIT*PGPFAYXXXX 365
F+L Y T LNFSTH PMLTSSI N+ L*L+ T+ A S E+ *PGPFA
Sbjct: 499 FKLWIYSTGFELLNFSTHIPMLTSSILNNLNL*LSNSATIKSATSHEMM*PGPFA*GGYS 678
Query: 364 XXXXXXSVTAHFPVLNGLCRRLRFPIYNGLSPLFNLMRLRTTSTLTNVSSSHFMMFAAVK 185
VTAH P+ GL L FP+Y SP L STLT VSSSHFM++ A
Sbjct: 679 SSGHSSYVTAHLPLRKGLW**LMFPMYRLPSPRTFFASLIMASTLTKVSSSHFMIYFAST 858
Query: 184 FWTPYS 167
TPYS
Sbjct: 859 VRTPYS 876
>gb|CV237411.1|CV237411 WS01227.B21.1_N22 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_N22 3', mRNA sequence
Length = 867
Score = 183 bits (395), Expect = 6e-046
Identities = 73/125 (58%), Positives = 91/125 (72%)
Frame = +3 / -3
Query: 171 YGVQNLTAANIMKCDDDTFVRVDVVLRRIKLNNGDKPLYMGNLNLLHRPLRTGKWAVTDE 350
YGV+ + A IMK DDDTFVRVD ++ + + LY+GN+N H+PLR GKWAVT E
Sbjct: 865 YGVRTVRAKYIMKGDDDTFVRVDSIIDEVNEIPAGRSLYIGNINYYHKPLRYGKWAVTYE 686
Query: 351 EWPEDIYPPYANGPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWVEKFNSTXXVXY 530
EWPE+ YPPYANGPGY++S DI +FIVS+ + LF MEDVSMG+WVE+FNS+ V Y
Sbjct: 685 EWPEEDYPPYANGPGYILSSDIGRFIVSEFESHKLRLFKMEDVSMGMWVEQFNSSRPVEY 506
Query: 531 SHSWK 545
HS K
Sbjct: 505 VHSLK 491
>gb|BI072933.1|BI072933 C090P65U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 411
Score = 171 bits (369), Expect(2) = 7e-044
Identities = 66/108 (61%), Positives = 83/108 (76%)
Frame = +3 / +2
Query: 114 LPFIDRYELVVLKTIAICEYGVQNLTAANIMKCDDDTFVRVDVVLRRIKLNNGDKPLYMG 293
+P++D Y+LVVLKT+AICEYGV+ + A IMK DDDTFVRVD + + + LY+G
Sbjct: 2 VPYMDNYDLVVLKTVAICEYGVRTVRAKYIMKVDDDTFVRVDSIRDEVNNVPAGRSLYIG 181
Query: 294 NLNLLHRPLRTGKWAVTDEEWPEDIYPPYANGPGYVISGDIAKFIVSQ 437
N+N H+PLR GKW VT EEWPE+ YPPYANGPGY++S DIA FIVS+
Sbjct: 182 NINYYHKPLRYGKWEVTYEEWPEEDYPPYANGPGYILSSDIAXFIVSE 325
Score = 24.9 bits (48), Expect(2) = 7e-044
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 468 MEDVSMGLW 494
MEDVSMG+W
Sbjct: 355 MEDVSMGMW 381
>gb|CV274094.1|CV274094 WS0172.B21_C23 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_C23 3', mRNA sequence
Length = 934
Score = 100 bits (214), Expect(2) = 8e-043
Identities = 35/65 (53%), Positives = 49/65 (75%)
Frame = +3 / -3
Query: 321 RTGKWAVTDEEWPEDIYPPYANGPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWVE 500
R KW +++EEWP D YPP+A+GPGY+IS DIAKFIV + LF +EDV+MG+W+E
Sbjct: 644 RDSKWYISNEEWPHDAYPPWAHGPGYIISRDIAKFIVRGHQERDLKLFKLEDVAMGIWIE 465
Query: 501 KFNST 515
+F ++
Sbjct: 464 QFKNS 450
Score = 92.7 bits (196), Expect(2) = 8e-043
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +3 / -3
Query: 36 FVALNSRKEVNVMLKKEAEYFGDIVILPFIDRYELVVLKTIAICEYGVQNLTAANIMKCD 215
F+ L+ +VN+ L KEA +GDI ++PF+D Y L+ LKTIAIC G + L A IMK D
Sbjct: 932 FIGLHKNSQVNLELWKEALVYGDIQLMPFVDYYSLISLKTIAICIMGTKILPAKYIMKTD 753
Query: 216 DDTFVRVDVVLRRIKLNNGDKPLY 287
DD FVR+D VL +K + LY
Sbjct: 752 DDAFVRIDQVLTSLKEKPSNGLLY 681
>gb|CN519694.1|CN519694 GQ0104.B3_A15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_A15 5', mRNA sequence
Length = 774
Score = 96.4 bits (204), Expect(2) = 7e-038
Identities = 44/99 (44%), Positives = 59/99 (59%)
Frame = +3 / +2
Query: 30 RFFVALNSRKEVNVMLKKEAEYFGDIVILPFIDRYELVVLKTIAICEYGVQNLTAANIMK 209
RFFV L+ + VN L EA +GDI ++PF+D Y L+ KT+AIC +G + +A +MK
Sbjct: 104 RFFVGLHKNQIVNEELWNEARTYGDIQLMPFVDYYNLITFKTLAICIFGTEVASAKYVMK 283
Query: 210 CDDDTFVRVDVVLRRIKLNNGDKPLYMGNLNLLHRPLRT 326
DDD FVRVD VL +K L G +N RP R+
Sbjct: 284 TDDDAFVRVDEVLASLKRIKVSHGLLYGLINSDSRPHRS 400
Score = 80.8 bits (170), Expect(2) = 7e-038
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +3 / +2
Query: 330 KWAVTDEEWPEDIYPPYANGPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWV 497
KW ++ EEW E+ YPP+A+GPGYV+S DIAK + + +F +EDV+MG+W+
Sbjct: 410 KWYISPEEWSEETYPPWAHGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWI 577
>gb|BI127543.1|BI127543 G062P08Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 457
Score = 152 bits (327), Expect = 1e-036
Identities = 64/74 (86%), Positives = 69/74 (93%)
Frame = +3 / +2
Query: 27 ARFFVALNSRKEVNVMLKKEAEYFGDIVILPFIDRYELVVLKTIAICEYGVQNLTAANIM 206
ARFFVALN RKEVN +LKKEA YFGDIVILPF+DRYELVVLKTIAICE+GVQN++AA IM
Sbjct: 236 ARFFVALNPRKEVNAVLKKEAAYFGDIVILPFMDRYELVVLKTIAICEFGVQNVSAAYIM 415
Query: 207 KCDDDTFVRVDVVL 248
KCDDDTFVRVD VL
Sbjct: 416 KCDDDTFVRVDTVL 457
Score = 121 bits (258), Expect = 5e-027
Identities = 54/77 (70%), Positives = 63/77 (81%)
Frame = -1 / -2
Query: 247 RTTSTLTNVSSSHFMMFAAVKFWTPYSQIAIVLRTTSS*RSINGKMTMSPKYSASFFNIT 68
+T STLTNVSSSHF+M+AA F TP SQIAIVLRTTSS SINGK+T+SPKY+ASFF+
Sbjct: 456 KTVSTLTNVSSSHFIMYAAETF*TPNSQIAIVLRTTSSYLSINGKITISPKYAASFFSTA 277
Query: 67 LTSFLEFSATKNRAPAY 17
TSFL F+ATK RA +
Sbjct: 276 FTSFLGFNATKKRATTF 226
>gb|CV232041.1|CV232041 WS0196.B21_F15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_F15 3', mRNA sequence
Length = 663
Score = 130 bits (278), Expect = 8e-030
Identities = 49/73 (67%), Positives = 57/73 (78%)
Frame = +3 / -2
Query: 339 VTDEEWPEDIYPPYANGPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWVEKFNSTX 518
VT EEWPE +YPPYANGPGYVIS DIAKF+++Q Q LF MEDVSMG+WVE+FNS+
Sbjct: 662 VTFEEWPEAVYPPYANGPGYVISTDIAKFVIAQHGKQSLRLFKMEDVSMGMWVEQFNSST 483
Query: 519 XVXYSHSWKXXXY 557
V YSH+WK Y
Sbjct: 482 PVQYSHNWKFCQY 444
>gb|CV244505.1|CV244505 WS0254.B21_N14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_N14 3', mRNA sequence
Length = 768
Score = 100 bits (212), Expect(2) = 3e-025
Identities = 35/65 (53%), Positives = 49/65 (75%)
Frame = +3 / -2
Query: 321 RTGKWAVTDEEWPEDIYPPYANGPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWVE 500
R KW +++EEWP D YPP+A+GPGY+IS DIAKFIV + LF +EDV+MG+W+E
Sbjct: 635 RDSKWYISNEEWPHDAYPPWAHGPGYIISRDIAKFIVRGPQERDLKLFKLEDVAMGIWIE 456
Query: 501 KFNST 515
+F ++
Sbjct: 455 QFKNS 441
Score = 34.5 bits (69), Expect(2) = 3e-025
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3 / -2
Query: 192 AANIMKCDDDTFVRVDVVLRRIKLNNGDKPLY 287
A IMK DDD FVR+D VL +K + LY
Sbjct: 767 AKYIMKTDDDAFVRIDQVLTSLKEKPSNGLLY 672
>gb|DT473521.1|DT473521 WS01229.BR_O05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_O05 5', mRNA sequence
Length = 873
Score = 80.8 bits (170), Expect(2) = 2e-024
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +3 / +3
Query: 330 KWAVTDEEWPEDIYPPYANGPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWV 497
KW ++ EEW E+ YPP+A+GPGYV+S DIAK + + +F +EDV+MG+W+
Sbjct: 186 KWYISPEEWSEETYPPWAHGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWI 353
Score = 51.5 bits (106), Expect(2) = 2e-024
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = +3 / +3
Query: 153 TIAICEYGVQNLTAANIMKCDDDTFVRVDVVLRRIKLNNGDKPLYMGNLNLLHRPLRT 326
T+AIC +G + +A +MK DDD FVRVD VL +K L G +N RP R+
Sbjct: 3 TLAICIFGTEVASAKYVMKTDDDAFVRVDEVLASLKRIKVSHGLLYGLINSDSRPHRS 176
>gb|DT476527.1|DT476527 WS01229.B21_O05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_O05 3', mRNA sequence
Length = 857
Score = 80.8 bits (170), Expect(2) = 1e-021
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +3 / -3
Query: 330 KWAVTDEEWPEDIYPPYANGPGYVISGDIAKFIVSQRANQXXXLFXMEDVSMGLWV 497
KW ++ EEW E+ YPP+A+GPGYV+S DIAK + + +F +EDV+MG+W+
Sbjct: 687 KWYISPEEWSEETYPPWAHGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWI 520
Score = 41.8 bits (85), Expect(2) = 1e-021
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +3 / -3
Query: 171 YGVQNLTAANIMKCDDDTFVRVDVVLRRIKLNNGDKPLYMGNLNLLHRPLRT 326
+G + +A +MK DDD FVRVD VL +K L G +N RP R+
Sbjct: 852 FGTEVASAKYVMKTDDDAFVRVDEVLASLKRIKVSHGLLYGLINSDSRPHRS 697
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 277,531,222
Number of Sequences: 369679
Number of extensions: 3966016
Number of successful extensions: 48429
Number of sequences better than 1.0e-020: 15
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6803947001
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)