TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCM12h10.yg.2.1
         (339 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AI166267.1|AI166267  xylem.est.116 Poplar xylem Lambda ZA...   138   1e-032
gb|BU896476.1|BU896476  X041D11 Populus wood cDNA library Po...   130   4e-030
gb|AJ772088.1|AJ772088  AJ772088 Populus euphratica shoot in...   116   5e-026
gb|AC149540.1|  Populus trichocarpa clone Pop1-111J19, compl...    60   2e-024
gb|CF232861.1|CF232861  PtaJXO0016F7F0711 Poplar cDNA librar...   110   3e-024

>gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZAPII library Populus trichocarpa
           cDNA 5', mRNA sequence
          Length = 645

 Score =  138 bits (296), Expect = 1e-032
 Identities = 54/109 (49%), Positives = 71/109 (65%)
 Frame = -3 / +1

                                                                       
Query: 328 VXXTFSMGTKSXXXDXXILHGGAKYRATXRGFVVQHKSFAENYXLYARGHFIKAIELGII 149
           V  TFS+GTK+      +LHGGAKYR+T RGFVV H  FA+NY LY+R HF+K IE+ I+
Sbjct: 205 VFFTFSLGTKTHYYGRTLLHGGAKYRSTGRGFVVFHAKFADNYRLYSRSHFVKGIEMMIL 384

                                                            
Query: 148 LTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPFAFXXSGFDWLKTV 2
           L VY       ++ + Y+    S WF+V +W+ APF F  SGF+W K V
Sbjct: 385 LVVYQIFGQPYRSAVAYVLITISMWFMVGTWLFAPFLFNPSGFEWQKIV 531



>gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 467

 Score =  130 bits (278), Expect = 4e-030
 Identities = 51/105 (48%), Positives = 66/105 (62%)
 Frame = -3 / +2

                                                                       
Query: 328 VXXTFSMGTKSXXXDXXILHGGAKYRATXRGFVVQHKSFAENYXLYARGHFIKAIELGII 149
           V  TFS+GTK+      +LHGG+ YRAT RGFVV H  FA+NY LY+R HF+K IEL I+
Sbjct: 152 VFFTFSLGTKTHYYGRTLLHGGSAYRATGRGFVVFHAKFADNYRLYSRSHFVKGIELMIL 331

                                                        
Query: 148 LTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPFAFXXSGFDW 14
           L V+       +    Y+    S WF+V +W+ APF F  SGF+W
Sbjct: 332 LLVFHIFGRSYRGVFAYVLITISMWFMVGTWLFAPFLFNPSGFEW 466



>gb|AJ772088.1|AJ772088 AJ772088 Populus euphratica shoot in vitro plantlet Israel Populus
           euphratica cDNA clone P0001700001C10F1, mRNA sequence
          Length = 341

 Score =  116 bits (248), Expect = 5e-026
 Identities = 46/96 (47%), Positives = 61/96 (63%)
 Frame = -3 / -2

                                                                       
Query: 328 VXXTFSMGTKSXXXDXXILHGGAKYRATXRGFVVQHKSFAENYXLYARGHFIKAIELGII 149
           V  TFS+GTK+      +LHGG+ YRAT RGFVV H  FA+NY LY+R HF+K IEL I+
Sbjct: 292 VFFTFSLGTKTHYYGRTLLHGGSAYRATGRGFVVFHAKFADNYRLYSRSHFVKGIELMIL 113

                                               
Query: 148 LTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPF 41
           L V+       +  + Y+    S WF+V +W+ APF
Sbjct: 112 LLVFHIFGRSYRGVVAYVLITISMWFMVGTWLFAPF 5



>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
          Length = 96953

 Score = 59.7 bits (124), Expect(3) = 2e-024
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = -3 / +2

                                                                  
Query: 166   IELGIILTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPFAFXXSGFDWLK 8
             +E+ ++L VY A+       L YI    SSWF+ +SW+ AP+ F  SGF+W K
Sbjct: 28280 LEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPYLFNPSGFEWQK 28438




 Score = 52.8 bits (109), Expect(3) = 2e-024
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = -3 / +3

                                          
Query: 256   YRATXRGFVVQHKSFAENYXLYARGHFIK 170
             Y+AT RGFVV+H  F+ENY LY+R HF+K
Sbjct: 28110 YQATGRGFVVRHIRFSENYRLYSRSHFVK 28196




 Score = 35.9 bits (72), Expect(3) = 2e-024
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -3 / +2

                                      
Query: 331   SVXXTFSMGTKSXXXDXXILHGGAK 257
             SV  TFS+GTKS      ILHGGA+
Sbjct: 27947 SVFFTFSLGTKSHYFGRTILHGGAR 28021



>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
           Populus alba x Populus tremula cDNA 5', mRNA sequence
          Length = 737

 Score =  110 bits (235), Expect = 3e-024
 Identities = 43/86 (50%), Positives = 55/86 (63%)
 Frame = -3 / +2

                                                                       
Query: 259 KYRATXRGFVVQHKSFAENYXLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYIXXXXS 80
           KYR T RGFVV H  FAENY LY+R HF+K IE+ I+L VY       ++ + Y+    S
Sbjct: 2   KYRPTGRGFVVFHAKFAENYRLYSRSHFVKGIEMMILLVVYQIFGQPYRSAVAYLLITIS 181

                                     
Query: 79  SWFLVVSWIMAPFAFXXSGFDWLKTV 2
            WF+V +W+ APF F  SGF+W K V
Sbjct: 182 MWFMVGTWLFAPFLFNPSGFEWQKIV 259



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 143,510,825
Number of Sequences: 369679
Number of extensions: 1491727
Number of successful extensions: 86262
Number of sequences better than 1.0e-020: 6
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 3130382871
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)