TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL24b11.yg.2.1
(520 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 76 8e-023
>gb|AY196961.1| Populus tremuloides cellulose synthase 6 (CesA6) mRNA, complete cds
Length = 3773
Score = 76.2 bits (160), Expect(2) = 8e-023
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = -2 / +2
Query: 492 AWGPLLGKLFFSFWVVLHLHPFLKGVIGRQGRVPT 388
+WGPL GKLFF+FWV++HL+PFLKG++GRQ R PT
Sbjct: 3101 SWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPT 3205
Score = 50.1 bits (103), Expect(2) = 8e-023
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -1 / +1
Query: 412 RQAGQGADRCRCAVNATGIHTLSFVGPGEPLRHQV*WTCSGGLWLGL*VRE 260
R Q + C VN G H FVG + QV W+ SGG+W GL*+ +
Sbjct: 3181 RPTEQNSHNHHCVVNLAGFHLFPFVGSDRSILGQVQWSTSGGMWTGL*LNQ 3333
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 234,603,670
Number of Sequences: 369679
Number of extensions: 3077030
Number of successful extensions: 69246
Number of sequences better than 1.0e-020: 2
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 5922860339
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)