TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH2g03.yg.2.1
         (537 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DT497112.1|DT497112  WS01125.BR_I08 PT-P-FL-A-2 Populus t...   111   4e-028
gb|DT495294.1|DT495294  WS01120.BR_A19 PT-P-FL-A-2 Populus t...   111   4e-028
gb|DT493588.1|DT493588  WS0111.BR_N04 PT-P-FL-A-2 Populus tr...   111   4e-028
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
           WS01125_I08 5', mRNA sequence
          Length = 908

 Score =  111 bits (236), Expect(2) = 4e-028
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +3 / +2

                                                                       
Query: 348 NEPGQSLDQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMX 527
           +EP Q+LDQVIY+IKLPG AIL EGKPENQ HAIIFTR    Q IDMNQ++YMEE LKM 
Sbjct: 89  SEPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMR 268

              
Query: 528 NLL 536
           NLL
Sbjct: 269 NLL 277

 Score = 33.1 bits (66), Expect(2) = 4e-028
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +3 / +2

                                
Query: 282 DRIKKIEKVYYSVLVKASVTK 344
           DR K I+KVYYS LVKA++ K
Sbjct: 14  DRSKVIQKVYYSSLVKAALPK 76
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
           WS01120_A19 5', mRNA sequence
          Length = 872

 Score =  111 bits (236), Expect(2) = 4e-028
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +3 / +2

                                                                       
Query: 348 NEPGQSLDQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMX 527
           +EP Q+LDQVIY+IKLPG AIL EGKPENQ HAIIFTR    Q IDMNQ++YMEE LKM 
Sbjct: 86  SEPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMR 265

              
Query: 528 NLL 536
           NLL
Sbjct: 266 NLL 274

 Score = 33.1 bits (66), Expect(2) = 4e-028
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +3 / +2

                                
Query: 282 DRIKKIEKVYYSVLVKASVTK 344
           DR K I+KVYYS LVKA++ K
Sbjct: 11  DRSKVIQKVYYSSLVKAALPK 73
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
           5', mRNA sequence
          Length = 599

 Score =  111 bits (236), Expect(2) = 4e-028
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +3 / +2

                                                                       
Query: 348 NEPGQSLDQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMX 527
           +EP Q+LDQVIY+IKLPG AIL EGKPENQ HAIIFTR    Q IDMNQ++YMEE LKM 
Sbjct: 86  SEPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMR 265

              
Query: 528 NLL 536
           NLL
Sbjct: 266 NLL 274

 Score = 33.1 bits (66), Expect(2) = 4e-028
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +3 / +2

                                
Query: 282 DRIKKIEKVYYSVLVKASVTK 344
           DR K I+KVYYS LVKA++ K
Sbjct: 11  DRSKVIQKVYYSSLVKAALPK 73
  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 213,848,353
Number of Sequences: 369679
Number of extensions: 2465916
Number of successful extensions: 34550
Number of sequences better than 1.0e-020: 4
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6216555893
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)