TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH2g03.yg.2.1
(537 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus t... 111 4e-028
gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus t... 111 4e-028
gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus tr... 111 4e-028
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 5', mRNA sequence
Length = 908
Score = 111 bits (236), Expect(2) = 4e-028
Identities = 47/63 (74%), Positives = 52/63 (82%)
Frame = +3 / +2
Query: 348 NEPGQSLDQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMX 527
+EP Q+LDQVIY+IKLPG AIL EGKPENQ HAIIFTR Q IDMNQ++YMEE LKM
Sbjct: 89 SEPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMR 268
Query: 528 NLL 536
NLL
Sbjct: 269 NLL 277
Score = 33.1 bits (66), Expect(2) = 4e-028
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 282 DRIKKIEKVYYSVLVKASVTK 344
DR K I+KVYYS LVKA++ K
Sbjct: 14 DRSKVIQKVYYSSLVKAALPK 76
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 5', mRNA sequence
Length = 872
Score = 111 bits (236), Expect(2) = 4e-028
Identities = 47/63 (74%), Positives = 52/63 (82%)
Frame = +3 / +2
Query: 348 NEPGQSLDQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMX 527
+EP Q+LDQVIY+IKLPG AIL EGKPENQ HAIIFTR Q IDMNQ++YMEE LKM
Sbjct: 86 SEPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMR 265
Query: 528 NLL 536
NLL
Sbjct: 266 NLL 274
Score = 33.1 bits (66), Expect(2) = 4e-028
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 282 DRIKKIEKVYYSVLVKASVTK 344
DR K I+KVYYS LVKA++ K
Sbjct: 11 DRSKVIQKVYYSSLVKAALPK 73
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
5', mRNA sequence
Length = 599
Score = 111 bits (236), Expect(2) = 4e-028
Identities = 47/63 (74%), Positives = 52/63 (82%)
Frame = +3 / +2
Query: 348 NEPGQSLDQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMX 527
+EP Q+LDQVIY+IKLPG AIL EGKPENQ HAIIFTR Q IDMNQ++YMEE LKM
Sbjct: 86 SEPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMR 265
Query: 528 NLL 536
NLL
Sbjct: 266 NLL 274
Score = 33.1 bits (66), Expect(2) = 4e-028
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3 / +2
Query: 282 DRIKKIEKVYYSVLVKASVTK 344
DR K I+KVYYS LVKA++ K
Sbjct: 11 DRSKVIQKVYYSSLVKAALPK 73
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 213,848,353
Number of Sequences: 369679
Number of extensions: 2465916
Number of successful extensions: 34550
Number of sequences better than 1.0e-020: 4
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6216555893
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)