TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH13e05.yg.2.1
(577 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV262757.1|CV262757 WS0202.B21_G23 PTxN-IB-N-A-11 Populu... 179 1e-044
gb|CV263502.1|CV263502 WS02022.B21_A13 PTxN-IB-N-A-11 Popul... 179 1e-044
gb|DT473521.1|DT473521 WS01229.BR_O05 PT-GT-FL-A-3 Populus ... 179 1e-044
gb|DT476527.1|DT476527 WS01229.B21_O05 PT-GT-FL-A-3 Populus... 179 1e-044
gb|CV235722.1|CV235722 WS01221.B21_F11 PT-GT-FL-A-3 Populus... 170 8e-042
gb|CN519694.1|CN519694 GQ0104.B3_A15 GQ010 Populus trichoca... 169 1e-041
gb|CV274094.1|CV274094 WS0172.B21_C23 PTxD-NR-A-8 Populus t... 140 8e-033
gb|CV244505.1|CV244505 WS0254.B21_N14 PT-MB-N-A-15 Populus ... 134 3e-031
gb|AJ774176.1|AJ774176 AJ774176 Populus euphratica shoot 3-... 62 4e-021
>gb|CV262757.1|CV262757 WS0202.B21_G23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_G23 3', mRNA sequence
Length = 768
Score = 179 bits (386), Expect = 1e-044
Identities = 69/111 (62%), Positives = 84/111 (75%)
Frame = -1 / -3
Query: 568 SKWYITXXXXXXXXXXXWAHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEM 389
SKWYI+ WAHGPGY+VS+DIAK VY+++K G LKMFKLEDVAMGIWI EM
Sbjct: 700 SKWYISPEEWSEETYPPWAHGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWIAEM 521
Query: 388 KKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
KK+GL+VKYE +GR+ EGC DGYV+AHYQ PR+M+CLW + Q+ CC
Sbjct: 520 KKEGLEVKYEMEGRVHNEGCRDGYVVAHYQAPREMLCLWQKLQEGNVARCC 368
Score = 137 bits (294), Expect = 5e-032
Identities = 68/113 (60%), Positives = 75/113 (66%)
Frame = +3 / +3
Query: 231 SLQHVPRFVF*N*SQRHIISLGSW**AIT*PSSHPSTKILPSFSYLTSKPSFFISLIHIP 410
S QH+ F *+ R ISLG+W* A T*PS HPS LPS SYLTSKPSFFIS I IP
Sbjct: 363 SPQHLATFPS*SFCHRQSISLGAW*WATT*PSLHPSLWTLPSISYLTSKPSFFISAIQIP 542
Query: 411 IATSSSLNIFNSPLLCFL*TSLAMSFETIYPGPCAQXXXXXXXXXXXVMYHLL 569
IATSSSLNIF P L L*T+LAMS +T PGPCAQ ++YHLL
Sbjct: 543 IATSSSLNIFKRPSLYLL*TALAMSRDTT*PGPCAQGG*VSSDHSSGLIYHLL 701
>gb|CV263502.1|CV263502 WS02022.B21_A13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_A13 3', mRNA sequence
Length = 768
Score = 179 bits (386), Expect = 1e-044
Identities = 69/111 (62%), Positives = 84/111 (75%)
Frame = -1 / -3
Query: 568 SKWYITXXXXXXXXXXXWAHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEM 389
SKWYI+ WAHGPGY+VS+DIAK VY+++K G LKMFKLEDVAMGIWI EM
Sbjct: 700 SKWYISPEEWSEETYPPWAHGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWIAEM 521
Query: 388 KKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
KK+GL+VKYE +GR+ EGC DGYV+AHYQ PR+M+CLW + Q+ CC
Sbjct: 520 KKEGLEVKYEMEGRVHNEGCRDGYVVAHYQAPREMLCLWQKLQEGNVARCC 368
Score = 137 bits (294), Expect = 5e-032
Identities = 68/113 (60%), Positives = 75/113 (66%)
Frame = +3 / +3
Query: 231 SLQHVPRFVF*N*SQRHIISLGSW**AIT*PSSHPSTKILPSFSYLTSKPSFFISLIHIP 410
S QH+ F *+ R ISLG+W* A T*PS HPS LPS SYLTSKPSFFIS I IP
Sbjct: 363 SPQHLATFPS*SFCHRQSISLGAW*WATT*PSLHPSLWTLPSISYLTSKPSFFISAIQIP 542
Query: 411 IATSSSLNIFNSPLLCFL*TSLAMSFETIYPGPCAQXXXXXXXXXXXVMYHLL 569
IATSSSLNIF P L L*T+LAMS +T PGPCAQ ++YHLL
Sbjct: 543 IATSSSLNIFKRPSLYLL*TALAMSRDTT*PGPCAQGG*VSSDHSSGLIYHLL 701
>gb|DT473521.1|DT473521 WS01229.BR_O05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_O05 5', mRNA sequence
Length = 873
Score = 179 bits (386), Expect = 1e-044
Identities = 69/111 (62%), Positives = 84/111 (75%)
Frame = -1 / +3
Query: 568 SKWYITXXXXXXXXXXXWAHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEM 389
SKWYI+ WAHGPGY+VS+DIAK VY+++K G LKMFKLEDVAMGIWI EM
Sbjct: 183 SKWYISPEEWSEETYPPWAHGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWIAEM 362
Query: 388 KKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
KK+GL+VKYE +GR+ EGC DGYV+AHYQ PR+M+CLW + Q+ CC
Sbjct: 363 KKEGLEVKYEMEGRVHNEGCRDGYVVAHYQAPREMLCLWQKLQEGNVARCC 515
Score = 137 bits (294), Expect = 5e-032
Identities = 68/113 (60%), Positives = 75/113 (66%)
Frame = +3 / -3
Query: 231 SLQHVPRFVF*N*SQRHIISLGSW**AIT*PSSHPSTKILPSFSYLTSKPSFFISLIHIP 410
S QH+ F *+ R ISLG+W* A T*PS HPS LPS SYLTSKPSFFIS I IP
Sbjct: 520 SPQHLATFPS*SFCHRQSISLGAW*WATT*PSLHPSLWTLPSISYLTSKPSFFISAIQIP 341
Query: 411 IATSSSLNIFNSPLLCFL*TSLAMSFETIYPGPCAQXXXXXXXXXXXVMYHLL 569
IATSSSLNIF P L L*T+LAMS +T PGPCAQ ++YHLL
Sbjct: 340 IATSSSLNIFKRPSLYLL*TALAMSRDTT*PGPCAQGG*VSSDHSSGLIYHLL 182
>gb|DT476527.1|DT476527 WS01229.B21_O05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_O05 3', mRNA sequence
Length = 857
Score = 179 bits (386), Expect = 1e-044
Identities = 69/111 (62%), Positives = 84/111 (75%)
Frame = -1 / -3
Query: 568 SKWYITXXXXXXXXXXXWAHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEM 389
SKWYI+ WAHGPGY+VS+DIAK VY+++K G LKMFKLEDVAMGIWI EM
Sbjct: 690 SKWYISPEEWSEETYPPWAHGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWIAEM 511
Query: 388 KKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
KK+GL+VKYE +GR+ EGC DGYV+AHYQ PR+M+CLW + Q+ CC
Sbjct: 510 KKEGLEVKYEMEGRVHNEGCRDGYVVAHYQAPREMLCLWQKLQEGNVARCC 358
Score = 137 bits (294), Expect = 5e-032
Identities = 68/113 (60%), Positives = 75/113 (66%)
Frame = +3 / +2
Query: 231 SLQHVPRFVF*N*SQRHIISLGSW**AIT*PSSHPSTKILPSFSYLTSKPSFFISLIHIP 410
S QH+ F *+ R ISLG+W* A T*PS HPS LPS SYLTSKPSFFIS I IP
Sbjct: 353 SPQHLATFPS*SFCHRQSISLGAW*WATT*PSLHPSLWTLPSISYLTSKPSFFISAIQIP 532
Query: 411 IATSSSLNIFNSPLLCFL*TSLAMSFETIYPGPCAQXXXXXXXXXXXVMYHLL 569
IATSSSLNIF P L L*T+LAMS +T PGPCAQ ++YHLL
Sbjct: 533 IATSSSLNIFKRPSLYLL*TALAMSRDTT*PGPCAQGG*VSSDHSSGLIYHLL 691
>gb|CV235722.1|CV235722 WS01221.B21_F11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_F11 3', mRNA sequence
Length = 633
Score = 170 bits (365), Expect = 8e-042
Identities = 62/92 (67%), Positives = 76/92 (82%)
Frame = -1 / -1
Query: 511 HGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVEG 332
HGPGY+VS+DIAK VY+++K G LKMFKLEDVAMGIWI EMKK+GL+VKYE +GR+ EG
Sbjct: 633 HGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYEMEGRVHNEG 454
Query: 331 CEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
C DGYV+AHYQ PR+M+CLW + Q+ CC
Sbjct: 453 CRDGYVVAHYQAPREMLCLWQKLQEGNVARCC 358
Score = 122 bits (261), Expect = 2e-027
Identities = 61/93 (65%), Positives = 66/93 (70%)
Frame = +3 / +2
Query: 231 SLQHVPRFVF*N*SQRHIISLGSW**AIT*PSSHPSTKILPSFSYLTSKPSFFISLIHIP 410
S QH+ F *+ R ISLG+W* A T*PS HPS LPS SYLTSKPSFFIS I IP
Sbjct: 353 SPQHLATFPS*SFCHRQSISLGAW*WATT*PSLHPSLWTLPSISYLTSKPSFFISAIQIP 532
Query: 411 IATSSSLNIFNSPLLCFL*TSLAMSFETIYPGP 509
IATSSSLNIF P L L*T+LAMS +T PGP
Sbjct: 533 IATSSSLNIFKRPSLYLL*TALAMSRDTT*PGP 631
>gb|CN519694.1|CN519694 GQ0104.B3_A15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_A15 5', mRNA sequence
Length = 774
Score = 169 bits (364), Expect = 1e-041
Identities = 67/111 (60%), Positives = 80/111 (72%)
Frame = -1 / +2
Query: 568 SKWYITXXXXXXXXXXXWAHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEM 389
SKWYI+ WAHGPGY+VS+DIAK VY+++K G LKMFKLEDVAMGIWI EM
Sbjct: 407 SKWYISPEEWSEETYPPWAHGPGYVVSRDIAKAVYKRYKEGRLKMFKLEDVAMGIWIAEM 586
Query: 388 KKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCC 236
KK+GL+VKYE +GR+ EGC DGYV+AHYQ PR+M+CL CC
Sbjct: 587 KKEGLEVKYEMEGRVHNEGCRDGYVVAHYQAPREMLCLXQXLXXGXXXXCC 739
Score = 132 bits (282), Expect = 2e-030
Identities = 63/98 (64%), Positives = 68/98 (69%)
Frame = +3 / -1
Query: 276 RHIISLGSW**AIT*PSSHPSTKILPSFSYLTSKPSFFISLIHIPIATSSSLNIFNSPLL 455
R ISLG+W* A T*PS HPS LPS SYLTSKPSFFIS I IPIATSSSLNIF P L
Sbjct: 699 RQSISLGAW*WATT*PSLHPSLWTLPSISYLTSKPSFFISAIQIPIATSSSLNIFKRPSL 520
Query: 456 CFL*TSLAMSFETIYPGPCAQXXXXXXXXXXXVMYHLL 569
L*T+LAMS +T PGPCAQ ++YHLL
Sbjct: 519 YLL*TALAMSRDTT*PGPCAQGG*VSSDHSSGLIYHLL 406
>gb|CV274094.1|CV274094 WS0172.B21_C23 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_C23 3', mRNA sequence
Length = 934
Score = 140 bits (300), Expect = 8e-033
Identities = 51/94 (54%), Positives = 67/94 (71%)
Frame = -1 / -3
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S+DIAK + R H+ +LK+FKLEDVAMGIWI + K G +V Y D R
Sbjct: 584 AHGPGYIISRDIAKFIVRGHQERDLKLFKLEDVAMGIWIEQFKNSGQEVHYMTDDRFYNA 405
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCK 233
GCE Y++AHYQ PR ++CLW++ QK + CC+
Sbjct: 404 GCETDYILAHYQSPRLVLCLWEKLQKEHQPACCE 303
>gb|CV244505.1|CV244505 WS0254.B21_N14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_N14 3', mRNA sequence
Length = 768
Score = 134 bits (288), Expect = 3e-031
Identities = 50/94 (53%), Positives = 65/94 (69%)
Frame = -1 / -2
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINEMKKDGLDVKYENDGRILVE 335
AHGPGYI+S+DIAK + R + +LK+FKLEDVAMGIWI + K G +V Y D R
Sbjct: 575 AHGPGYIISRDIAKFIVRGPQERDLKLFKLEDVAMGIWIEQFKNSGQEVHYMTDDRFYNA 396
Query: 334 GCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCK 233
GCE Y+ AHYQ PR ++CLW++ QK + CC+
Sbjct: 395 GCETDYIFAHYQSPRLVLCLWEKLQKEPQPACCE 294
>gb|AJ774176.1|AJ774176 AJ774176 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300013F04F1, mRNA sequence
Length = 366
Score = 62.0 bits (129), Expect(2) = 4e-021
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = -1 / +1
Query: 394 EMKKDGLDVKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE 230
E + V+Y + + GC +GY HYQ PR M+CLW++ QK R CC E
Sbjct: 139 EQFNSSIPVEYVHSLKFCQLGCIEGYYTGHYQAPRQMICLWEKLQKQGRAQCCNE 303
Score = 58.3 bits (121), Expect(2) = 4e-021
Identities = 21/41 (51%), Positives = 33/41 (80%)
Frame = -1 / +1
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINE 392
A+GPGYI+S DIA + + +S +LK+FK+EDV+MG+W+ +
Sbjct: 22 ANGPGYILSSDIACFIVSEFESHKLKLFKMEDVSMGMWVEQ 144
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 297,630,538
Number of Sequences: 369679
Number of extensions: 4095578
Number of successful extensions: 56975
Number of sequences better than 1.0e-020: 10
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6852896260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)