TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG38e04.yg.2.1
(690 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZA... 388 e-107
gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Po... 319 2e-086
gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA librar... 257 6e-068
gb|AJ772088.1|AJ772088 AJ772088 Populus euphratica shoot in... 217 3e-060
gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6... 215 2e-055
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 91 1e-053
gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library... 170 8e-042
gb|AJ770061.1|AJ770061 AJ770061 Populus euphratica leaf 3-6... 166 2e-040
gb|AI166257.1|AI166257 xylem.est.107 Poplar xylem Lambda ZA... 148 4e-035
gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid librar... 146 1e-034
gb|CK099401.1|CK099401 A066P21.5pR Hybrid aspen plasmid lib... 127 3e-030
>gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 645
Score = 388 bits (842), Expect = e-107
Identities = 158/197 (80%), Positives = 172/197 (87%)
Frame = -2 / +1
Query: 620 NXXLQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTK 441
N LQ A AS SFV GFLMALPM+MEIGLERGFRTALS+F+LMQLQLA VFFTFSLGTK
Sbjct: 55 NKPLQVALASQSFVQIGFLMALPMLMEIGLERGFRTALSEFLLMQLQLAPVFFTFSLGTK 234
Query: 440 THYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQS 261
THYYGRTLLHGGA+YR+TGRGFVVFHAKFA+NYRLYSRSHFVKG+E+MILLVVY+IFGQ
Sbjct: 235 THYYGRTLLHGGAKYRSTGRGFVVFHAKFADNYRLYSRSHFVKGIEMMILLVVYQIFGQP 414
Query: 260 YRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWHKWISNRGGIGVAPX 81
YR A+ Y+ IT+SMWFMVGTWLFAPFLFNPSGFEWQKIVDDW+DW+KWISNRGGIGV P
Sbjct: 415 YRSAVAYVLITISMWFMVGTWLFAPFLFNPSGFEWQKIVDDWSDWNKWISNRGGIGVPPE 594
Query: 80 XXXXXXXXXEQEPLRCS 30
EQE LR S
Sbjct: 595 KSWESWWEEEQEHLRHS 645
Score = 277 bits (599), Expect = 5e-074
Identities = 131/191 (68%), Positives = 142/191 (74%)
Frame = +1 / -2
Query: 31 EQRRGSCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKSQVPT 210
E RR SCS SHHDSQLFSG TPIPPRLLIHL QS QSSTIFCHS PEGL RNGAKSQVPT
Sbjct: 644 E*RRCSCSSSHHDSQLFSGGTPIPPRLLIHLFQSDQSSTIFCHSKPEGLKRNGAKSQVPT 465
Query: 211 MNHMDTVMKM*VIAPLYD*PNXXXXXXXXXXXXPLTKWLRE*SR*FSANLAWNTTNPRPV 390
+NH+D V++ * A LY *PN PLTK LRE*S * SANLAW TT P PV
Sbjct: 464 INHIDIVIRT*ATALLYG*PNI**TTSKIIISIPLTK*LRE*SL*LSANLAWKTTKPLPV 285
Query: 391 ALYSAPPWSNVLP***VFVPNENVKKTEAN*SCISIKSLNAVLNPLSKPISIIMGSAIKN 570
LY APP SNVLP** VFVP ENVK T A+ +CI+ SL+AV PLSKPISI +G+AIKN
Sbjct: 284 DLYFAPPCSNVLP**WVFVPRENVKNTGASCNCINKNSLSAVRKPLSKPISINIGNAIKN 105
Query: 571 PXXTKDXDAXA 603
P TKD +A A
Sbjct: 104 PI*TKD*EARA 72
Score = 219 bits (473), Expect = 1e-056
Identities = 96/190 (50%), Positives = 123/190 (64%)
Frame = -1 / +3
Query: 600 SCVXVFCAXWIFDGAAHDDGNRFGERIQNCIE*FYTDAASVGLCFLHILVGNKNSLLRKD 421
SC +FC+ IFDG A+ DGN G+ +C +* + DA + C HI +K+ LL KD
Sbjct: 75 SCFSIFCSNRIFDGIAYVDGNWLGKGFPHCTK*IFIDAITTSTCIFHIFSWHKDPLLWKD 254
Query: 420 VTPWRSGIQSHWTWVCGVPCQIC*ELSTLFPQPFCQGP*ADDSTSCV*NIWSVI*RGYNL 241
+ W I HW CG+PCQIC*+L LFPQ CQG * DD C+ NIWS I + L
Sbjct: 255 IAAWWGKI*VHW*RFCGLPCQIC*QL*ALFPQSLCQGY*DDDFACCLSNIWSAIQKCSRL 434
Query: 240 HLHHRIHVVHGGHLALCTIPVQSFWI*VAEDCG*LD*LAQVDQQSWRYWCGTREKLGVMV 61
++ I+VV+G +LA C+IP+QSFW *VAEDC *L *L QVD+ WR C TR++LG+MV
Sbjct: 435 CPNNYIYVVYGWYLAFCSIPLQSFWF*VAEDC**LV*LEQVDK*PWRNRCPTRKELGIMV 614
Query: 60 GKRAGAPSLL 31
G+R GA S L
Sbjct: 615 GRRTGASSSL 644
Score = 214 bits (462), Expect = 4e-055
Identities = 90/168 (53%), Positives = 118/168 (70%)
Frame = +3 / -1
Query: 84 WCHTNTSTIADPLVPISPVIHNLLPLKSRRIEQEWCKEPSAHHEPHGYGDEDVSYSPSI* 263
W T +ST+ PLVPI P+I+NLLPLK+RRIE+EW K+P +H+PH Y D+ S+
Sbjct: 591 WWDTYSSTVTYPLVPIRPIINNLLPLKTRRIEEEWSKKPGTNHKPHRYSY*DIGDCTSVW 412
Query: 264 LTKYFIHN**NHQLKALDKMAAGIKSIVLSKFGMEHHKPTSSGSVFRSSME*RPSVVVSF 443
LTKY I+N NH L LDK+ AGIK IV+SKFGME HK ++SG +F +M+ PS+VV
Sbjct: 411 LTKYLINNKQNHHLNTLDKVTAGIKPIVVSKFGMEDHKTSTSGPIFCPTMQQCPSIVVGL 232
Query: 444 CSQRECEENRGQLKLHQYKITQCSSESSLQTDFHHHGQRHQKSXXHKR 587
C++R+CE+ R L LHQ K T CS+E+ Q +FH H Q HQKS +KR
Sbjct: 231 CAKRKCEKYRC*L*LHQ*KFT*CSAETPFQANFHQHRQCHQKSYLNKR 88
Score = 117 bits (250), Expect(2) = 2e-046
Identities = 60/111 (54%), Positives = 68/111 (61%)
Frame = -3 / +2
Query: 586 LLCXXDF*WRCP**WKSVWREDSELH*VILY*CSFSWPLFSSHSRWEQKLTTTEGRYSME 407
LL DF*W C *WK W+ S LH*V Y*C+++ L+ SH Q+ TT EG M
Sbjct: 89 LLFK*DF*WHCLC*WKLAWKGVSALH*VNFY*CNYN*HLYFSHFLLAQRPTTMEGHCCMV 268
Query: 406 ERNTEPLDVGLWCSMPNLLRTIDFIPAAILSRALS**FY*LCMKYLVSHIE 254
+N PL LW SMPNLL TI FIPA LSR L **F L +KYLVSH E
Sbjct: 269 GQNIGPLVEVLWSSMPNLLTTIGFIPAVTLSRVLR**FCLLFIKYLVSHTE 421
Score = 99.6 bits (211), Expect(2) = 4e-040
Identities = 52/109 (47%), Positives = 62/109 (56%)
Frame = +2 / -3
Query: 260 MTDQIFHTQLVESSAQGP*QNGCGNKVDSSQQIWHGTPQTHVQWLCIPLLHGVTSFRSSE 439
M DQIF Q +SS+Q P*Q+ CGNK S QQIWHG PQ QW I H SF SS
Sbjct: 415 MADQIFDKQQAKSSSQYP*QSDCGNKAYSCQQIWHGRPQNLYQWTYILPHHAAMSFHSSG 236
Query: 440 FLFPTRM*RKQRPTEAASV*NHSMQF*ILSPNRFPSSWAAPSKIXXAQK 586
L +M*+ Q AS+ H +Q P++FPS+ A PSKI QK
Sbjct: 235 SLCQEKM*KIQVLVVIASIKIHLVQCGNPFPSQFPST*AMPSKILFEQK 89
Score = 88.6 bits (187), Expect(2) = 2e-046
Identities = 41/64 (64%), Positives = 45/64 (70%)
Frame = -3 / +2
Query: 226 YPCGSWWALGSLHHSCSILLDLSGRRLWMTGLIGTSGSAIVEVLVWHQRKAGSHGGKKSR 47
Y CG W G L HS SILL LSGRRL M GLIGTSG VE V HQ++ G+HGGKK+R
Sbjct: 449 YLCGLWLVPGFLLHSSSILLVLSGRRLLMIGLIGTSG*VTVEE*VSHQKRVGNHGGKKNR 628
Query: 46 SPFV 35
S FV
Sbjct: 629 SIFV 640
Score = 85.4 bits (180), Expect(2) = 4e-040
Identities = 38/63 (60%), Positives = 46/63 (73%)
Frame = +2 / -3
Query: 32 SNEGAPALFPTMTPSFSLVPHQYLHDC*STCANQSSHPQSSATQIQKD*TGMVQRAKCPP 211
S+E AP L PTM P+ LV H +LH STC+NQ++H QSSATQ QKD* GM Q+A+ P
Sbjct: 643 SDEDAPVLLPTMIPNSFLVGHLFLHGYLSTCSNQTNHQQSSATQNQKD*RGMEQKARYQP 464
Query: 212 *TT 220
*TT
Sbjct: 463 *TT 455
>gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 467
Score = 319 bits (690), Expect = 2e-086
Identities = 128/149 (85%), Positives = 137/149 (91%)
Frame = -2 / +2
Query: 602 AXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTKTHYYGR 423
A AS SFV GFLMALPMMMEIGLE+GFR ALSDFILMQLQLA VFFTFSLGTKTHYYGR
Sbjct: 20 ALASQSFVQIGFLMALPMMMEIGLEKGFRNALSDFILMQLQLAPVFFTFSLGTKTHYYGR 199
Query: 422 TLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQSYRGAIT 243
TLLHGG+ YRATGRGFVVFHAKFA+NYRLYSRSHFVKG+ELMILL+V+ IFG+SYRG
Sbjct: 200 TLLHGGSAYRATGRGFVVFHAKFADNYRLYSRSHFVKGIELMILLLVFHIFGRSYRGVFA 379
Query: 242 YIFITVSMWFMVGTWLFAPFLFNPSGFEW 156
Y+ IT+SMWFMVGTWLFAPFLFNPSGFEW
Sbjct: 380 YVLITISMWFMVGTWLFAPFLFNPSGFEW 466
Score = 219 bits (473), Expect = 1e-056
Identities = 97/149 (65%), Positives = 110/149 (73%)
Frame = +1 / -3
Query: 157 HSNPEGLNRNGAKSQVPTMNHMDTVMKM*VIAPLYD*PNXXXXXXXXXXXXPLTKWLRE* 336
HSNP+GL R GAKS VPTMNH+D V+K PLY+ PN PLTKWLRE
Sbjct: 465 HSNPDGLKRKGAKSHVPTMNHIDIVIKTYANTPLYERPNIWNTRSRIINSIPLTKWLREY 286
Query: 337 SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SCISIKSLNAV 516
+ * SANLAWNTT PRPVALY+ PP SNVLP***VFVP ENVK T AN +CI++KSLNA+
Sbjct: 285 NL*LSANLAWNTTKPRPVALYAEPPCSNVLP***VFVPRENVKNTGANCNCINMKSLNAL 106
Query: 517 LNPLSKPISIIMGSAIKNPXXTKDXDAXA 603
NP S+PISII+G AIKNP TKD +A A
Sbjct: 105 RNPFSRPISIIIGKAIKNPICTKD*EARA 19
Score = 193 bits (416), Expect = 1e-048
Identities = 79/148 (53%), Positives = 98/148 (66%)
Frame = -1 / +1
Query: 600 SCVXVFCAXWIFDGAAHDDGNRFGERIQNCIE*FYTDAASVGLCFLHILVGNKNSLLRKD 421
SC VFCA WIFDG A+DDGN GERI CI+*F+ DA ++G C HI NK+SLL KD
Sbjct: 22 SCFSVFCANWIFDGFAYDDGNWSGERIS*CIK*FHIDAVTIGPCIFHIFSWNKDSLLWKD 201
Query: 420 VTPWRSGIQSHWTWVCGVPCQIC*ELSTLFPQPFCQGP*ADDSTSCV*NIWSVI*RGYNL 241
+ WR IQS+W W+C VPC +C* L +F QPF Q * DDS C+ IW+ I R +
Sbjct: 202 IAAWRFSIQSYWPWLCSVPC*VC**LQVVFSQPFRQRD*IDDSAPCIPYIWAFIQRCICI 381
Query: 240 HLHHRIHVVHGGHLALCTIPVQSFWI*V 157
+H I+VVHGG +A C+ P QS +*V
Sbjct: 382 CFNHYINVVHGGDMAFCSFPFQSIRV*V 465
Score = 175 bits (377), Expect = 2e-043
Identities = 76/144 (52%), Positives = 99/144 (68%)
Frame = +3 / -2
Query: 156 PLKSRRIEQEWCKEPSAHHEPHGYGDEDVSYSPSI*LTKYFIHN**NHQLKALDKMAAGI 335
PLK IE+E K+P HHEPH Y D ++ S+* KY + NHQ D+MAA I
Sbjct: 466 PLKP*WIEKERSKKPCPHHEPH*YSD*NICKYTSV*TPKYMEYKEQNHQFNPFDEMAARI 287
Query: 336 KSIVLSKFGMEHHKPTSSGSVFRSSME*RPSVVVSFCSQRECEENRGQLKLHQYKITQCS 515
+ +V+SK MEH+K T+S SV +SM+ PS++VS CS+R+CE+ RGQL LHQY+IT C
Sbjct: 286 QPVVISKLSMEHYKATASSSVC*TSMQQCPSIIVSLCSKRKCEKYRGQL*LHQYEIT*CI 107
Query: 516 SESSLQTDFHHHGQRHQKSXXHKR 587
++S LQT+FHHH Q HQKS HKR
Sbjct: 106 TKSFLQTNFHHHRQSHQKSNLHKR 35
Score = 124 bits (265), Expect(2) = 8e-032
Identities = 62/111 (55%), Positives = 73/111 (65%)
Frame = -3 / +3
Query: 586 LLCXXDF*WRCP**WKSVWREDSELH*VILY*CSFSWPLFSSHSRWEQKLTTTEGRYSME 407
LLC DF*W C **WK VWR+D +H*VI Y*CS++WPL+ SH EQ+LT EG ME
Sbjct: 36 LLCKLDF*WLCL**WKLVWRKDFVMH*VISY*CSYNWPLYFSHFLLEQRLTIMEGHCCME 215
Query: 406 ERNTEPLDVGLWCSMPNLLRTIDFIPAAILSRALS**FY*LCMKYLVSHIE 254
++TE L V L CSM +LL T I AAI S+ L+**F L YL H E
Sbjct: 216 VQHTELLAVAL*CSMLSLLITTGCILAAISSKGLN**FCSLYSIYLGVHTE 368
Score = 118 bits (252), Expect(2) = 4e-028
Identities = 60/112 (53%), Positives = 71/112 (63%)
Frame = +2 / -1
Query: 254 LYMTDQIFHTQLVESSAQGP*QNGCGNKVDSSQQIWHGTPQTHVQWLCIPLLHGVTSFRS 433
L M QI+ Q ESS Q *+NGC N S QQ HGT Q+H Q LC+ LH SF +
Sbjct: 368 LCMNAQIYGIQGAESSIQSL*RNGCENTTCSYQQT*HGTLQSHGQ*LCMLNLHAAMSFHN 189
Query: 434 SEFLFPTRM*RKQRPTEAASV*NHSMQF*ILSPNRFPSSWAAPSKIXXAQKT 589
SE LF +M*+ Q P AS+*NH M + ILSP++FPSS A PSKI AQKT
Sbjct: 188 SESLFQEKM*KIQGPIVTASI*NHLMHYEILSPDQFPSS*AKPSKIQFAQKT 33
Score = 32.7 bits (65), Expect(2) = 8e-032
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -3 / +3
Query: 232 SPYPCGSWWALGSLHHSCSILLDLSG 155
S Y CGSWW G L S SI LSG
Sbjct: 390 SLYQCGSWWGHGFLLLSFSIHQGLSG 467
Score = 26.3 bits (51), Expect(2) = 4e-028
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2 / -1
Query: 158 TQIQKD*TGMVQRAKCPP*TTWI 226
TQ D* G Q+A PP*TT I
Sbjct: 464 TQTLMD*KGKEQKAMSPP*TTLI 396
>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 737
Score = 257 bits (555), Expect = 6e-068
Identities = 102/129 (79%), Positives = 110/129 (85%)
Frame = -2 / +2
Query: 401 EYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQSYRGAITYIFITVS 222
+YR TGRGFVVFHAKFAENYRLYSRSHFVKG+E+MILLVVY+IFGQ YR A+ Y+ IT+S
Sbjct: 2 KYRPTGRGFVVFHAKFAENYRLYSRSHFVKGIEMMILLVVYQIFGQPYRSAVAYLLITIS 181
Query: 221 MWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWHKWISNRGGIGVAPXXXXXXXXXXEQEP 42
MWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDW+KWISNRGGIGV EQE
Sbjct: 182 MWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWISNRGGIGVPSEKSWESWWEEEQEH 361
Query: 41 LRCSGKRGT 15
LR SGKRGT
Sbjct: 362 LRHSGKRGT 388
Score = 209 bits (450), Expect = 2e-053
Identities = 93/128 (72%), Positives = 96/128 (75%)
Frame = +1 / -3
Query: 16 VPRFPEQRRGSCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAK 195
VPRFPE RR SCS SHHDSQLFS TPIPPRLLIHL QSVQSSTIFCHSNPEGL R GA
Sbjct: 387 VPRFPE*RRCSCSSSHHDSQLFSDGTPIPPRLLIHLFQSVQSSTIFCHSNPEGLKRKGAN 208
Query: 196 SQVPTMNHMDTVMKM*VIAPLYD*PNXXXXXXXXXXXXPLTKWLRE*SR*FSANLAWNTT 375
SQVPT+NH+D V+K * A LY *PN P TK LRE*S *FSANLAWNTT
Sbjct: 207 SQVPTINHIDIVIKR*ATALLYG*PNI*YTTSKIIISIPFTK*LRE*SL*FSANLAWNTT 28
Query: 376 NPRPVALY 399
NP PV LY
Sbjct: 27 NPLPVGLY 4
Score = 178 bits (383), Expect = 3e-044
Identities = 75/126 (59%), Positives = 92/126 (73%)
Frame = -1 / +1
Query: 393 SHWTWVCGVPCQIC*ELSTLFPQPFCQGP*ADDSTSCV*NIWSVI*RGYNLHLHHRIHVV 214
+HW VC VPCQ+C*EL LFPQ FC+G * DD CV NIWS I + L L++ I+VV
Sbjct: 10 AHW*RVCSVPCQVC*ELQALFPQSFCEGY*DDDFARCVSNIWSAIQKCSRLSLNNYIYVV 189
Query: 213 HGGHLALCTIPVQSFWI*VAEDCG*LD*LAQVDQQSWRYWCGTREKLGVMVGKRAGAPSL 34
+G +LA+C+ P+QSFWI*VAEDC *LD*L QVD+ WR C E+LG+MVG+R GA S
Sbjct: 190 YGWYLAVCSFPLQSFWI*VAEDC**LD*LEQVDK*PWRNRCSIGEELGIMVGRRTGASSS 369
Query: 33 LWEARY 16
LW+A Y
Sbjct: 370 LWKAWY 387
Score = 144 bits (308), Expect = 8e-034
Identities = 58/104 (55%), Positives = 77/104 (74%)
Frame = +3 / -2
Query: 90 HTNTSTIADPLVPISPVIHNLLPLKSRRIEQEWCKEPSAHHEPHGYGDEDVSYSPSI*LT 269
+T +ST+ PLVPISP+I+NLLPLKSRRIE+E K+P +H+PH Y ++ S+ LT
Sbjct: 313 NTYSSTVTYPLVPISPIINNLLPLKSRRIEEERSKQPGTNHKPHRYSY*EIGDCTSVWLT 134
Query: 270 KYFIHN**NHQLKALDKMAAGIKSIVLSKFGMEHHKPTSSGSVF 401
KY IHN NH L L KM AGI+ ++LSK GMEH+KP++SG +F
Sbjct: 133 KYLIHNEQNHHLNTLHKMTAGIEPVILSKLGMEHYKPSTSGPIF 2
Score = 94.1 bits (199), Expect(2) = 2e-031
Identities = 44/70 (62%), Positives = 49/70 (70%)
Frame = -3 / +3
Query: 226 YPCGSWWALGSLHHSCSILLDLSGRRLWMTGLIGTSGSAIVEVLVWHQRKAGSHGGKKSR 47
Y CG W G L S SILLDLSGRRL M GLIGTSG VE V+H+R+ G+HGGKK+R
Sbjct: 177 YLCGLWLVPGCLLLSSSILLDLSGRRLLMIGLIGTSG*VTVEE*VFHRRRVGNHGGKKNR 356
Query: 46 SPFVALGSAV 17
S FV L S V
Sbjct: 357 SIFVTLESVV 386
Score = 90.9 bits (192), Expect(2) = 2e-032
Identities = 41/68 (60%), Positives = 48/68 (70%)
Frame = +2 / -1
Query: 17 YRASQSNEGAPALFPTMTPSFSLVPHQYLHDC*STCANQSSHPQSSATQIQKD*TGMVQR 196
Y A QS+E AP L PTM P+ S + H +LH STC+NQS+H QSSATQIQKD* G Q
Sbjct: 386 YHAFQSDEDAPVLLPTMIPNSSPMEHLFLHGYLSTCSNQSNHQQSSATQIQKD*RGKEQT 207
Query: 197 AKCPP*TT 220
A+ P*TT
Sbjct: 206 ARYQP*TT 183
Score = 68.0 bits (142), Expect(2) = 2e-032
Identities = 28/47 (59%), Positives = 32/47 (68%)
Frame = +2 / -1
Query: 260 MTDQIFHTQLVESSAQGP*QNGCGNKVDSSQQIWHGTPQTHVQWLCI 400
M DQIF TQ +SS+Q P QN CGN+ +SQQ WHGT QT QW I
Sbjct: 143 MADQIFDTQRAKSSSQYPSQNDCGNRACNSQQTWHGTLQTLYQWAYI 3
Score = 61.6 bits (128), Expect(2) = 2e-031
Identities = 31/49 (63%), Positives = 33/49 (67%)
Frame = -3 / +3
Query: 400 NTEPLDVGLWCSMPNLLRTIDFIPAAILSRALS**FY*LCMKYLVSHIE 254
N PL GL CSMP+LLR IPA IL R L **F LC+KYLVSH E
Sbjct: 3 NIGPLVEGL*CSMPSLLRITGSIPAVIL*RVLR**FCSLCIKYLVSHTE 149
>gb|AJ772088.1|AJ772088 AJ772088 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700001C10F1, mRNA sequence
Length = 341
Score = 217 bits (468), Expect(2) = 3e-060
Identities = 83/97 (85%), Positives = 92/97 (94%)
Frame = -2 / -2
Query: 470 VFFTFSLGTKTHYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMIL 291
VFFTFSLGTKTHYYGRTLLHGG+ YRATGRGFVVFHAKFA+NYRLYSRSHFVKG+ELMIL
Sbjct: 292 VFFTFSLGTKTHYYGRTLLHGGSAYRATGRGFVVFHAKFADNYRLYSRSHFVKGIELMIL 113
Query: 290 LVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFL 180
L+V+ IFG+SYRG + Y+ IT+SMWFMVGTWLFAPFL
Sbjct: 112 LLVFHIFGRSYRGVVAYVLITISMWFMVGTWLFAPFL 2
Score = 141 bits (303), Expect(2) = 2e-034
Identities = 63/97 (64%), Positives = 68/97 (70%)
Frame = +1 / +3
Query: 181 RNGAKSQVPTMNHMDTVMKM*VIAPLYD*PNXXXXXXXXXXXXPLTKWLRE*SR*FSANL 360
R GAKS VPTMNH+D V+K PLY+ PN PLTKWLRE + * SANL
Sbjct: 3 RKGAKSHVPTMNHIDIVIKTYATTPLYERPNIWNTRSRIINSIPLTKWLREYNL*LSANL 182
Query: 361 AWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKT 471
AWNTT PRPVALY+ PP SNVLP***VFVP ENVK T
Sbjct: 183 AWNTTKPRPVALYAEPPCSNVLP***VFVPRENVKNT 293
Score = 124 bits (266), Expect = 5e-028
Identities = 51/113 (45%), Positives = 67/113 (59%)
Frame = -1 / -1
Query: 519 QNCIE*FYTDAASVGLCFLHILVGNKNSLLRKDVTPWRSGIQSHWTWVCGVPCQIC*ELS 340
+N + F + C HI NK+SLL KD+ WR IQS+W W+C VPC +C* L
Sbjct: 341 RNALSDFILMQLQLAACIFHIFSWNKDSLLWKDIAAWRFSIQSYWPWLCSVPC*VC**LQ 162
Query: 339 TLFPQPFCQGP*ADDSTSCV*NIWSVI*RGYNLHLHHRIHVVHGGHLALCTIP 181
+F QPF Q * DDS SC+ IW+ I R + +H I+VVHGG +A C+ P
Sbjct: 161 VVFSQPFRQRD*IDDSASCIPYIWAFIQRCSCICFNHYINVVHGGDMAFCSFP 3
Score = 105 bits (223), Expect(2) = 3e-022
Identities = 45/98 (45%), Positives = 64/98 (65%)
Frame = +3 / +2
Query: 180 QEWCKEPSAHHEPHGYGDEDVSYSPSI*LTKYFIHN**NHQLKALDKMAAGIKSIVLSKF 359
+E K+P HHEPH Y D ++ S+* KY + NHQ D+MAA I+ +V+SK
Sbjct: 2 KERSKKPCPHHEPH*YSD*NICNYTSV*TPKYMEYKKQNHQFNPFDEMAARIQPVVISKL 181
Query: 360 GMEHHKPTSSGSVFRSSME*RPSVVVSFCSQRECEENR 473
MEH+K T+S SV +SM+ PS++VS CS+R+CE+ R
Sbjct: 182 SMEHYKATASSSVC*TSMQQCPSIIVSLCSKRKCEKYR 295
Score = 35.0 bits (70), Expect(2) = 3e-060
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2 / -1
Query: 518 RTALSDFILMQLQLASVFF 462
R ALSDFILMQLQLA+ F
Sbjct: 341 RNALSDFILMQLQLAACIF 285
Score = 24.0 bits (46), Expect(2) = 2e-034
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1 / +1
Query: 475 AN*SCISIKSLNAV 516
AN +CI++KSLNA+
Sbjct: 298 ANCNCINMKSLNAL 339
Score = 19.4 bits (36), Expect(2) = 3e-022
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2 / +2
Query: 470 QRPTEAASV*NH 505
+RP AS+*NH
Sbjct: 293 RRPIVTASI*NH 328
>gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400015B12F1, mRNA sequence
Length = 468
Score = 215 bits (464), Expect = 2e-055
Identities = 90/105 (85%), Positives = 94/105 (89%)
Frame = -2 / +3
Query: 620 NXXLQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTK 441
N LQ A AS SFV GFLMALPMMMEIGLE+GF ALSDFILMQLQLA VFFTFSLGTK
Sbjct: 153 NKALQVALASQSFVQIGFLMALPMMMEIGLEKGFHNALSDFILMQLQLAPVFFTFSLGTK 332
Query: 440 THYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGL 306
THYYGRTLLHGG+ YRATGRGFVVFHAKFA+NYRLYSRSHFVKG+
Sbjct: 333 THYYGRTLLHGGSAYRATGRGFVVFHAKFADNYRLYSRSHFVKGI 467
Score = 163 bits (351), Expect = 9e-040
Identities = 73/98 (74%), Positives = 81/98 (82%)
Frame = +1 / -3
Query: 310 PLTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SC 489
PLTKWLRE + * SANLAWNTT PRPVALY+ PP SNVLP***VFVP ENVK T AN SC
Sbjct: 463 PLTKWLREYNL*LSANLAWNTTKPRPVALYAEPPCSNVLP***VFVPRENVKNTGANCSC 284
Query: 490 ISIKSLNAVLNPLSKPISIIMGSAIKNPXXTKDXDAXA 603
I++KSLNA+ NP S+PISII+G AIKNP TKD +A A
Sbjct: 283 INMKSLNAL*NPFSRPISIIIGKAIKNPICTKD*EARA 170
Score = 145 bits (312), Expect = 2e-034
Identities = 56/96 (58%), Positives = 67/96 (69%)
Frame = -1 / +2
Query: 600 SCVXVFCAXWIFDGAAHDDGNRFGERIQNCIE*FYTDAASVGLCFLHILVGNKNSLLRKD 421
SC VFCA WIFDG A+DDGN GERI C++*F+ DAA++G C HI NK+SLL KD
Sbjct: 173 SCFSVFCANWIFDGFAYDDGNWSGERIS*CVK*FHIDAATIGPCIFHIFSWNKDSLLWKD 352
Query: 420 VTPWRSGIQSHWTWVCGVPCQIC*ELSTLFPQPFCQ 313
+ WR IQS+W W C VPC +C* L +F QPF Q
Sbjct: 353 IAAWRFSIQSYWPWFCSVPC*VC**LQVVFSQPFRQ 460
Score = 125 bits (268), Expect = 2e-028
Identities = 55/102 (53%), Positives = 72/102 (70%)
Frame = +3 / -2
Query: 315 DKMAAGIKSIVLSKFGMEHHKPTSSGSVFRSSME*RPSVVVSFCSQRECEENRGQLKLHQ 494
D+MAA I+ +V+SK MEH+K T+S SV +SM+ PS++VS CS+R+CE+ RGQL LHQ
Sbjct: 458 DEMAARIQPVVISKLSMEHYKTTASSSVC*TSMQQCPSIIVSLCSKRKCEKYRGQL*LHQ 279
Query: 495 YKITQCSSESSLQTDFHHHGQRHQKSXXHKRX*RXSXLXXXI 620
Y+IT +S LQT+FHHH Q HQKS HKR S L +
Sbjct: 278 YEIT*RIMKSFLQTNFHHHRQSHQKSNLHKRLRSKSYLKSLV 153
Score = 110 bits (234), Expect = 1e-023
Identities = 53/94 (56%), Positives = 63/94 (67%)
Frame = -3 / +1
Query: 586 LLCXXDF*WRCP**WKSVWREDSELH*VILY*CSFSWPLFSSHSRWEQKLTTTEGRYSME 407
LLC DF*W C **WK VWR+D + *VI Y*CS++WPL+ SH EQ+LT EG ME
Sbjct: 187 LLCKLDF*WLCL**WKLVWRKDFIMR*VISY*CSYNWPLYFSHFLLEQRLTIMEGHCCME 366
Query: 406 ERNTEPLDVGLWCSMPNLLRTIDFIPAAILSRAL 305
++TE L V L CSM +LL T I AAI S+ L
Sbjct: 367 VQHTELLAVVL*CSMLSLLITTGCILAAISSKGL 468
Score = 104 bits (222), Expect = 6e-022
Identities = 52/95 (54%), Positives = 61/95 (64%)
Frame = +2 / -1
Query: 305 QGP*QNGCGNKVDSSQQIWHGTPQTHVQWLCIPLLHGVTSFRSSEFLFPTRM*RKQRPTE 484
Q *+NGC N S QQ HGT Q H Q LC+ LH SF +SE LF +M*+ Q P
Sbjct: 468 QSL*RNGCENTTCSYQQT*HGTLQNHGQ*LCMLNLHAAMSFHNSESLFQEKM*KIQGPIV 289
Query: 485 AASV*NHSMQF*ILSPNRFPSSWAAPSKIXXAQKT 589
AAS+*NH + ILSP++FPSS A PSKI AQKT
Sbjct: 288 AASI*NHLTHYEILSPDQFPSS*AKPSKIQFAQKT 184
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 91.3 bits (193), Expect(4) = 1e-053
Identities = 34/53 (64%), Positives = 44/53 (83%)
Frame = -2 / +2
Query: 308 LELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQK 150
LE+++LLVVY +G + GA++YI +TVS WFM +WLFAP+LFNPSGFEWQK
Sbjct: 28280 LEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPYLFNPSGFEWQK 28438
Score = 74.4 bits (156), Expect(4) = 1e-053
Identities = 29/37 (78%), Positives = 34/37 (91%)
Frame = -2 / +2
Query: 512 ALSDFILMQLQLASVFFTFSLGTKTHYYGRTLLHGGA 402
A+ +FI MQLQL SVFFTFSLGTK+HY+GRT+LHGGA
Sbjct: 27908 AVVNFITMQLQLCSVFFTFSLGTKSHYFGRTILHGGA 28018
Score = 65.7 bits (137), Expect(4) = 1e-053
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = -2 / +3
Query: 398 YRATGRGFVVFHAKFAENYRLYSRSHFVKG 309
Y+ATGRGFVV H +F+ENYRLYSRSHFVKG
Sbjct: 28110 YQATGRGFVVRHIRFSENYRLYSRSHFVKG 28199
Score = 60.2 bits (125), Expect(4) = 6e-026
Identities = 25/30 (83%), Positives = 25/30 (83%)
Frame = +1 / -2
Query: 310 PLTKWLRE*SR*FSANLAWNTTNPRPVALY 399
PLTKWLRE*S *FS NL W TTNPRPVA Y
Sbjct: 28198 PLTKWLRE*SL*FSENLIWRTTNPRPVA*Y 28109
Score = 47.3 bits (97), Expect(4) = 6e-026
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +1 / -3
Query: 403 APPWSNVLP***VFVPNENVKKTEAN*SCISIKSLNA 513
APP VLP * FVPNENVKKTE +*SCI +K A
Sbjct: 28017 APP*RMVLPK*CDFVPNENVKKTEQS*SCIVMKLTTA 27907
Score = 35.0 bits (70), Expect(4) = 1e-053
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2 / +2
Query: 152 KIVDDWTDWHKWISNRGGIGV 90
+ V+D++DW W+ RGGIGV
Sbjct: 28514 RTVEDFSDWTNWLFYRGGIGV 28576
Score = 32.7 bits (65), Expect(4) = 6e-026
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1 / -3
Query: 52 SFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTI 150
S SH SQL TPIPP QS++SST+
Sbjct: 28614 SSSHQASQLSCPLTPIPPL*KSQFVQSLKSSTV 28516
Score = 31.8 bits (63), Expect(4) = 6e-026
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +3 / -2
Query: 150 LLPLKSRRIEQEWCKEPSAHHEPHGYGDEDVSYSPSI*LTKYFIHN**NHQLKALDK 320
LLPLKSR IEQ K+P H+P ++V +I + +H+ H + DK
Sbjct: 28438 LLPLKSRWIEQIGSKKPR*SHKPTADCKKNVR*CTTIIIPVCKVHDQQKHNF*SEDK 28268
>gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B010P30 5', mRNA sequence
Length = 297
Score = 170 bits (366), Expect = 8e-042
Identities = 65/85 (76%), Positives = 75/85 (88%)
Frame = -2 / +1
Query: 398 YRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQSYRGAITYIFITVSM 219
YRATG GFVVFHAKFA+NYRLYSRSHFVKG+ELMILL+V+ IFG+SYRG Y+ IT+SM
Sbjct: 7 YRATGCGFVVFHAKFADNYRLYSRSHFVKGIELMILLLVFHIFGRSYRGVFAYVLITISM 186
Query: 218 WFMVGTWLFAPFLFNPSGFEWQKIV 144
WFMVGTWLFAPFLFNPSG ++ +
Sbjct: 187 WFMVGTWLFAPFLFNPSGLSGKRFL 261
Score = 111 bits (237), Expect(2) = 4e-026
Identities = 47/80 (58%), Positives = 54/80 (67%)
Frame = +1 / -2
Query: 163 NPEGLNRNGAKSQVPTMNHMDTVMKM*VIAPLYD*PNXXXXXXXXXXXXPLTKWLRE*SR 342
NP+GL R GAKS VPTMNH+D V+K PLY+ PN PLTKWLRE +
Sbjct: 242 NPDGLKRKGAKSHVPTMNHIDIVIKTYANTPLYERPNIWNTRSRIINSIPLTKWLREYNL 63
Query: 343 *FSANLAWNTTNPRPVALYS 402
* SANLAWNTT P+PVALY+
Sbjct: 62 *LSANLAWNTTKPQPVALYA 3
Score = 25.8 bits (50), Expect(2) = 4e-026
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / -3
Query: 121 LCQSVQSSTIFCHS 162
L QSV SS IFCHS
Sbjct: 283 LIQSV*SSRIFCHS 242
>gb|AJ770061.1|AJ770061 AJ770061 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100006E01F1, mRNA sequence
Length = 295
Score = 166 bits (356), Expect = 2e-040
Identities = 68/97 (70%), Positives = 81/97 (83%)
Frame = -2 / -1
Query: 572 GFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTKTHYYGRTLLHGGAEYR 393
G A+PM++ LE GF A+ FI MQLQL SVFFTFSLGTK+HY+GRT+LHGGA Y+
Sbjct: 292 GIFTAVPMVLGFILELGFLRAVVSFITMQLQLCSVFFTFSLGTKSHYFGRTILHGGARYQ 113
Query: 392 ATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVV 282
ATGRGFVV H +F+ENYRLYSRSHFVKGLE+++LLVV
Sbjct: 112 ATGRGFVVRHIRFSENYRLYSRSHFVKGLEVVLLLVV 2
Score = 118 bits (253), Expect = 3e-026
Identities = 57/88 (64%), Positives = 63/88 (71%)
Frame = +1 / +3
Query: 310 PLTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SC 489
PLTKWLRE*S *FS NL W TTNPRPVA Y APP VLP * FVPNENVKKTE +*SC
Sbjct: 30 PLTKWLRE*SL*FSENLIWRTTNPRPVA*YLAPP*RMVLPK*CDFVPNENVKKTEQS*SC 209
Query: 490 ISIKSLNAVLNPLSKPISIIMGSAIKNP 573
I +K A+ NP SK +G+A+K P
Sbjct: 210 IVMKLTTALKNPSSKMKPKTIGTAVKIP 293
>gb|AI166257.1|AI166257 xylem.est.107 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 583
Score = 148 bits (317), Expect = 4e-035
Identities = 64/74 (86%), Positives = 66/74 (89%)
Frame = -2 / +2
Query: 620 NXXLQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTK 441
N LQ A AS SFV GFLMALPM+MEIGLERGFRTALS+FILMQLQLA VFFTFSLGTK
Sbjct: 353 NKPLQVALASQSFVQIGFLMALPMLMEIGLERGFRTALSEFILMQLQLAPVFFTFSLGTK 532
Query: 440 THYYGRTLLHGGAE 399
THYYGRTLLHGGAE
Sbjct: 533 THYYGRTLLHGGAE 574
Score = 109 bits (233), Expect = 2e-023
Identities = 50/70 (71%), Positives = 57/70 (81%)
Frame = +1 / -2
Query: 394 LYSAPPWSNVLP***VFVPNENVKKTEAN*SCISIKSLNAVLNPLSKPISIIMGSAIKNP 573
++SAPPWSNVLP** VFVP ENVK T A+ +CISI SL+AV PLSKPISI +G+AIKNP
Sbjct: 579 IFSAPPWSNVLP**WVFVPRENVKNTGASCNCISINSLSAVRKPLSKPISINIGNAIKNP 400
Query: 574 XXTKDXDAXA 603
TKD DA A
Sbjct: 399 I*TKD*DARA 370
>gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 268
Score = 146 bits (314), Expect = 1e-034
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = -2 / +2
Query: 338 LYSRSHFVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFE 159
LYSRSHFVKGLE+++LLVVY +G + GA++YI +TVS WFM +WLFAP+LFNPSGFE
Sbjct: 2 LYSRSHFVKGLEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPYLFNPSGFE 181
Query: 158 WQKIVDDWTDWHKWISNRGGIGV 90
WQK V+D++DW W+ RGGIGV
Sbjct: 182 WQKTVEDFSDWTNWLFYRGGIGV 250
>gb|CK099401.1|CK099401 A066P21.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A066P21 5', mRNA sequence
Length = 323
Score = 127 bits (272), Expect(3) = 3e-030
Identities = 48/69 (69%), Positives = 60/69 (86%)
Frame = -2 / +1
Query: 359 KFAENYRLYSRSHFVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFL 180
+F+ENYRLYSRSHFVKGLE+++LLVVY +G + GA++YI +TVS WFM +WLFAP+L
Sbjct: 73 EFSENYRLYSRSHFVKGLEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPYL 252
Query: 179 FNPSGFEWQ 153
FNPSGFEWQ
Sbjct: 253 FNPSGFEWQ 279
Score = 22.6 bits (43), Expect(3) = 3e-030
Identities = 5/14 (35%), Positives = 11/14 (78%)
Frame = -2 / +2
Query: 155 QKIVDDWTDWHKWI 114
++ V+D++DW W+
Sbjct: 278 KQTVEDFSDWTNWL 319
Score = 18.5 bits (34), Expect(3) = 3e-030
Identities = 4/6 (66%), Positives = 5/6 (83%)
Frame = -1 / +2
Query: 381 WVCGVP 364
W+CG P
Sbjct: 50 WICGPP 67
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 336,300,995
Number of Sequences: 369679
Number of extensions: 5227140
Number of successful extensions: 51563
Number of sequences better than 1.0e-020: 12
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8598585660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)