TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG11e12.yg.2.1
(636 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY935501.1| Populus tremula x Populus tremuloides putati... 152 3e-044
>gb|AY935501.1| Populus tremula x Populus tremuloides putative
endo-1,4-beta-xylanase mRNA, complete cds
Length = 3001
Score = 152 bits (326), Expect(2) = 3e-044
Identities = 67/122 (54%), Positives = 83/122 (68%)
Frame = +2 / +1
Query: 224 GIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLR 403
G G NYAVVS R E WQGLEQDIT+++S + Y +SA V V G VQ +V ATL+
Sbjct: 259 GFSTKPGGNYAVVSNRKECWQGLEQDITSRISPCSTYSISARVGVSGPVQYPTDVLATLK 438
Query: 404 LQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVA 583
L+ + +T Y VG + SKE W KLEG+FSL MP +VVFYLEGP GVDL+I+SV +
Sbjct: 439 LEYQNSATSYLLVGEISVSKEGWEKLEGTFSLATMPDHVVFYLEGPAPGVDLLIESVIIT 618
Query: 584 CS 589
CS
Sbjct: 619 CS 624
Score = 105 bits (223), Expect = 4e-022
Identities = 54/118 (45%), Positives = 67/118 (56%)
Frame = -1 / -3
Query: 588 EQATVTESMTRSTPAGGPSR*NTTFFGMFVKEKEPSNLFHFSFEATTLPTGL*CVDPSAF 409
EQ +T+S++RSTP GPS+* TT+ GM E PSN H SF+ PT * V +
Sbjct: 623 EQVMITDSISRSTPGAGPSK*KTTWSGMVANENVPSNFSHPSFDTEISPTSK*LVAEFWY 444
Query: 408 CNLRVALTSTWP*TIPSTLTKAEXXXXXXXXXXXVISCSRPCQCSVLFETTA*FSPEF 235
+ +VA TS T P T T+AE VISCSRPCQ S+ F+TTA* P F
Sbjct: 443 SSFKVASTSVGYCTGPDTPTRAEME*VEHGEIRLVISCSRPCQHSLRFDTTA*LPPGF 270
Score = 100 bits (214), Expect(2) = 2e-023
Identities = 41/114 (35%), Positives = 68/114 (59%)
Frame = +2 / +1
Query: 239 SGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNAD 418
SG+ A ++RT+ W G++Q+IT +V Y +A VR+ G +++ATL +Q +
Sbjct: 784 SGKVLATATERTQSWNGIQQEITERVQRKLAYEATAVVRIFGNNVTSADIRATLWVQTPN 963
Query: 419 GSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
Y + ++ A+ + W +L+G F L PK VV Y+EGPPAG D++++S V
Sbjct: 964 LREQYIGIANLQATDKDWVQLQGKFLLNGSPKRVVIYIEGPPAGTDILVNSFVV 1125
Score = 48.3 bits (99), Expect(2) = 3e-044
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +2 / +1
Query: 74 SVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSG 214
S T+S SS NIILN+DFS+GL+ W+P C + S SG
Sbjct: 112 SETVSQNMIDSSNSNAPNIILNHDFSRGLNSWHPNCCDGFVLSADSG 252
Score = 33.1 bits (66), Expect(2) = 2e-023
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2 / +1
Query: 38 EGPPPGVDLLIDSVTIS 88
EGP PGVDLLI+SV I+
Sbjct: 568 EGPAPGVDLLIESVIIT 618
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 327,698,722
Number of Sequences: 369679
Number of extensions: 4927449
Number of successful extensions: 55943
Number of sequences better than 1.0e-020: 1
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7831881440
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)