TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF7a10.yg.2.1
(523 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT477642.1|DT477642 WS02520.BR_I18 PT-MB-N-A-15 Populus ... 190 5e-060
gb|DV463139.1|DV463139 MTUNUL1.P12.C01 NUL Populus fremonti... 150 8e-057
gb|CF232526.1|CF232526 PtaJXO0011E5E0509 Poplar cDNA librar... 180 5e-045
gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, compl... 78 4e-044
gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, compl... 78 4e-044
gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, compl... 78 1e-043
gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, compl... 78 1e-043
gb|BU891108.1|BU891108 P046A12 Populus petioles cDNA librar... 172 1e-042
gb|BI127738.1|BI127738 G065P17Y Populus cambium cDNA librar... 133 9e-039
gb|CV253098.1|CV253098 PX0019.B21_H11 PT-X-FL-A-1 Populus t... 123 6e-028
gb|DT500667.1|DT500667 PX0019.BR.1_H11 PT-X-FL-A-1 Populus ... 123 6e-028
gb|DT518407.1|DT518407 WS02438.B21_A22 PTxD-ICC-N-A-14 Popu... 123 6e-028
gb|DN500074.1|DN500074 UB12CPA10.5pR Populus active cambium... 75 3e-027
gb|BU820611.1|BU820611 UB12CPA10 Populus tremula cambium cD... 75 3e-027
gb|CX184787.1|CX184787 C03_45-30_05.ab1 leaf inoculated wit... 116 7e-026
>gb|DT477642.1|DT477642 WS02520.BR_I18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I18 5', mRNA sequence
Length = 809
Score = 190 bits (410), Expect(2) = 5e-060
Identities = 83/111 (74%), Positives = 91/111 (81%)
Frame = +3 / +3
Query: 12 RRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSHAA 191
+RK VGKI+ A LT LCI LKQSP F S FS HE GV HVLVTGGAGYIGSHAA
Sbjct: 363 KRKNNVVGKILLAATLTALCIIMLKQSPTFYSPSPFSLHEEGVIHVLVTGGAGYIGSHAA 542
Query: 192 LRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
LRLL+D YRVTIVDNLSRGN+GAVKVLQ LFP+PGRLQFI+ADLGD K+V+
Sbjct: 543 LRLLKDGYRVTIVDNLSRGNIGAVKVLQELFPEPGRLQFIYADLGDPKTVN 695
Score = 134 bits (287), Expect(2) = 1e-039
Identities = 62/100 (62%), Positives = 70/100 (70%)
Frame = -1 / -2
Query: 328 SPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAPPVTK 149
SPRSA +N SLPG GN C+T TAP+FP +RLSTMVTR* S KS AA EP+*PAPPVT+
Sbjct: 679 SPRSAYIN*SLPGSGNNSCKTLTAPMFPRERLSTMVTR*PSFKSRNAAWEPM*PAPPVTR 500
Query: 148 TWVTPGSWRENTLLPPKPGDCFRANIQSVVRTRAAMIFPT 29
T +TP S +EN L K GDCF I VR A IFPT
Sbjct: 499 T*ITPSSCKENGLGE*KVGDCFSIIIHKAVRVAAKRIFPT 380
Score = 60.2 bits (125), Expect(2) = 5e-060
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = +1 / +3
Query: 436 VNKIFAENAFDAVMHFAAXAYVGESTLEP 522
VN IF++NAFDAVMHFAA AYVGEST+EP
Sbjct: 690 VNIIFSQNAFDAVMHFAAVAYVGESTMEP 776
Score = 48.7 bits (100), Expect(2) = 1e-039
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = -3 / -2
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
GS VLSPT A AAKCITASNAF I+LT
Sbjct: 775 GSMVLSPTYATAAKCITASNAFCEKIMLT 689
>gb|DV463139.1|DV463139 MTUNUL1.P12.C01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 623
Score = 150 bits (323), Expect(3) = 8e-057
Identities = 63/72 (87%), Positives = 69/72 (95%)
Frame = +3 / +3
Query: 129 EPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQF 308
E GVTHVLVTGGAGYIGSHAALRLL+DSYRVTIVDNLSRGN+GAVKVLQ LFP+PGRLQF
Sbjct: 267 ELGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKVLQDLFPEPGRLQF 446
Query: 309 IFADLGDQKSVS 344
I+ADLGD K+V+
Sbjct: 447 IYADLGDAKAVN 482
Score = 102 bits (217), Expect(3) = 9e-031
Identities = 49/80 (61%), Positives = 56/80 (70%)
Frame = -1 / -2
Query: 367 NSFRSIDEDTDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKA 188
N+F + T F SP+SA MNC+ PG GN+ RT TAP FP +RLST+VTR S KS A
Sbjct: 505 NAFSAKILFTAFASPKSAYMNCNRPGSGNRSWRTLTAPRFPRERLSTIVTRYESFKSRSA 326
Query: 187 ACEPI*PAPPVTKTWVTPGS 128
A EPI PAPPVTKT VTP S
Sbjct: 325 A*EPIYPAPPVTKTCVTPSS 266
Score = 68.0 bits (142), Expect(3) = 8e-057
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +1 / +3
Query: 427 ASQVNKIFAENAFDAVMHFAAXAYVGESTLEP 522
A VNKIFAENAFDAVMHFAA AYVGEST+EP
Sbjct: 468 AKAVNKIFAENAFDAVMHFAAVAYVGESTMEP 563
Score = 40.5 bits (82), Expect(3) = 9e-031
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -2 / -1
Query: 519 FQCALSHISXSCKVHHSIKCIFSKYLV 439
F C ++I S ++HHSIKCIFSK V
Sbjct: 560 FHCTFTNICNSSEMHHSIKCIFSKDFV 480
Score = 40.0 bits (81), Expect(3) = 8e-057
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3 / +2
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQS 92
D+RRK R GKIIAA + T+CI LKQ+
Sbjct: 137 DSRRKSRCAGKIIAAALCITVCIIILKQN 223
Score = 28.1 bits (55), Expect(3) = 9e-031
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1 / -3
Query: 88 CFRANIQSVVRTRAAMIFPTLRGFRLASK 2
C R + +V+++ AA+IFP FRL S+
Sbjct: 219 CLRMIMHTVMQSAAAIIFPAHLLFRLESR 133
>gb|CF232526.1|CF232526 PtaJXO0011E5E0509 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 709
Score = 180 bits (388), Expect = 5e-045
Identities = 79/107 (73%), Positives = 85/107 (79%)
Frame = +3 / +3
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D +RK VGKI+ A LT LCI LKQSP F S FS HE GV HVLVTGGAG+IGSH
Sbjct: 315 DPKRKNNVVGKILLAATLTALCIIMLKQSPTFYSPSPFSLHEEGVIHVLVTGGAGFIGSH 494
Query: 186 AALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFIFADLG 326
AALRLL D YRVTI DNLSRGN+GAVKVLQ LFP+PGRLQFI+ADLG
Sbjct: 495 AALRLLXDGYRVTIXDNLSRGNIGAVKVLQELFPEPGRLQFIYADLG 635
Score = 136 bits (291), Expect = 1e-031
Identities = 62/108 (57%), Positives = 71/108 (65%)
Frame = -1 / -1
Query: 325 PRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAPPVTKT 146
PRSA +N SLPG GN C+T TAP+FP +RLS MVTR* S KS AA EP+ PAPPVT+T
Sbjct: 634 PRSAYIN*SLPGSGNNSCKTLTAPMFPRERLSXMVTR*PSXKSRNAAWEPMKPAPPVTRT 455
Query: 145 WVTPGSWRENTLLPPKPGDCFRANIQSVVRTRAAMIFPTLRGFRLASK 2
W+TP S +EN L K GDCF I VR A IFPT F S+
Sbjct: 454 WITPSSCKENGLGE*KVGDCFSIIIHKAVRVAAKRIFPTTLFFLFGSE 311
>gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, complete sequence
Length = 101981
Score = 77.6 bits (163), Expect(4) = 4e-044
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +3 / +1
Query: 231 DNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
DNLSRGN+GAVKVLQ LFP+PGRLQFI+ADLG+ K+VS
Sbjct: 33508 DNLSRGNLGAVKVLQELFPEPGRLQFIYADLGEPKTVS 33621
Score = 75.3 bits (158), Expect(4) = 4e-044
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = +3 / +1
Query: 117 FSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIV 230
FS E GV HVLVTGGAGYIGSHAALRLL+D YRVTIV
Sbjct: 33286 FSLREDGVIHVLVTGGAGYIGSHAALRLLKDGYRVTIV 33399
Score = 65.2 bits (136), Expect(3) = 5e-030
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = -1 / -1
Query: 241 DRLSTMVTR*LSCKSLKAACEPI*PAPPVTKTWVTPGSWREN 116
D +TMVTR* S KS AA EP+*PAPPVT+TW+TP S +EN
Sbjct: 33410 DEHTTMVTR*PSFKSRNAAWEPM*PAPPVTRTWITPSSRKEN 33285
Score = 61.6 bits (128), Expect(4) = 4e-044
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +1 / +3
Query: 415 FHLTASQVNKIFAENAFDAVMHFAAXAYVGESTLEP 522
F L QVN IF++NAFDAVMHFAA AYVGEST+ P
Sbjct: 33699 FPLPNFQVNSIFSQNAFDAVMHFAAVAYVGESTVYP 33806
Score = 56.5 bits (117), Expect(3) = 5e-030
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = -1 / -1
Query: 355 SIDEDTDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLS 230
S ++DT SP+SA +N SLPG GN C+T TAP FP +RLS
Sbjct: 33632 SNNKDTVLGSPKSAYIN*SLPGSGNNSCKTLTAPKFPRERLS 33507
Score = 46.4 bits (95), Expect(3) = 5e-030
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = -3 / -2
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
G VLSPT A AAKCITASNAF +LLT
Sbjct: 33805 GYTVLSPTYATAAKCITASNAFCEKMLLT 33719
Score = 42.3 bits (86), Expect(4) = 4e-044
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +3 / +1
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNS 113
D +RK VGKI+ A LT +CI LKQSP F S
Sbjct: 32977 DPKRKNNVVGKILLAASLTAVCIIMLKQSPTFNSPS 33084
>gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, complete sequence
Length = 106128
Score = 77.6 bits (163), Expect(4) = 4e-044
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +3 / -3
Query: 231 DNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
DNLSRGN+GAVKVLQ LFP+PGRLQFI+ADLG+ K+VS
Sbjct: 16255 DNLSRGNLGAVKVLQELFPEPGRLQFIYADLGEPKTVS 16142
Score = 75.3 bits (158), Expect(4) = 4e-044
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = +3 / -3
Query: 117 FSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIV 230
FS E GV HVLVTGGAGYIGSHAALRLL+D YRVTIV
Sbjct: 16477 FSLREDGVIHVLVTGGAGYIGSHAALRLLKDGYRVTIV 16364
Score = 65.2 bits (136), Expect(3) = 5e-030
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = -1 / +3
Query: 241 DRLSTMVTR*LSCKSLKAACEPI*PAPPVTKTWVTPGSWREN 116
D +TMVTR* S KS AA EP+*PAPPVT+TW+TP S +EN
Sbjct: 16353 DEHTTMVTR*PSFKSRNAAWEPM*PAPPVTRTWITPSSRKEN 16478
Score = 61.6 bits (128), Expect(4) = 4e-044
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +1 / -2
Query: 415 FHLTASQVNKIFAENAFDAVMHFAAXAYVGESTLEP 522
F L QVN IF++NAFDAVMHFAA AYVGEST+ P
Sbjct: 16064 FPLPNFQVNSIFSQNAFDAVMHFAAVAYVGESTVYP 15957
Score = 56.5 bits (117), Expect(3) = 5e-030
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = -1 / +3
Query: 355 SIDEDTDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLS 230
S ++DT SP+SA +N SLPG GN C+T TAP FP +RLS
Sbjct: 16131 SNNKDTVLGSPKSAYIN*SLPGSGNNSCKTLTAPKFPRERLS 16256
Score = 46.4 bits (95), Expect(3) = 5e-030
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = -3 / +1
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
G VLSPT A AAKCITASNAF +LLT
Sbjct: 15958 GYTVLSPTYATAAKCITASNAFCEKMLLT 16044
Score = 42.3 bits (86), Expect(4) = 4e-044
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +3 / -3
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNS 113
D +RK VGKI+ A LT +CI LKQSP F S
Sbjct: 16786 DPKRKNNVVGKILLAASLTAVCIIMLKQSPTFNSPS 16679
>gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, complete sequence
Length = 148552
Score = 77.6 bits (163), Expect(4) = 1e-043
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +3 / -3
Query: 231 DNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
DNLSRGN+GAVKVLQ LFP+PGRLQFI+ADLG+ K+VS
Sbjct: 16901 DNLSRGNLGAVKVLQELFPEPGRLQFIYADLGEPKTVS 16788
Score = 75.3 bits (158), Expect(4) = 1e-043
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = +3 / -3
Query: 117 FSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIV 230
FS E GV HVLVTGGAGYIGSHAALRLL+D YRVTIV
Sbjct: 17123 FSLREDGVIHVLVTGGAGYIGSHAALRLLKDGYRVTIV 17010
Score = 65.2 bits (136), Expect(3) = 5e-030
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = -1 / +1
Query: 241 DRLSTMVTR*LSCKSLKAACEPI*PAPPVTKTWVTPGSWREN 116
D +TMVTR* S KS AA EP+*PAPPVT+TW+TP S +EN
Sbjct: 16999 DEHTTMVTR*PSFKSRNAAWEPM*PAPPVTRTWITPSSRKEN 17124
Score = 61.6 bits (128), Expect(4) = 1e-043
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +1 / -2
Query: 415 FHLTASQVNKIFAENAFDAVMHFAAXAYVGESTLEP 522
F L QVN IF++NAFDAVMHFAA AYVGEST+ P
Sbjct: 16710 FPLPNFQVNSIFSQNAFDAVMHFAAVAYVGESTVYP 16603
Score = 56.5 bits (117), Expect(3) = 5e-030
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = -1 / +1
Query: 355 SIDEDTDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLS 230
S ++DT SP+SA +N SLPG GN C+T TAP FP +RLS
Sbjct: 16777 SNNKDTVLGSPKSAYIN*SLPGSGNNSCKTLTAPKFPRERLS 16902
Score = 46.4 bits (95), Expect(3) = 5e-030
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = -3 / +2
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
G VLSPT A AAKCITASNAF +LLT
Sbjct: 16604 GYTVLSPTYATAAKCITASNAFCEKMLLT 16690
Score = 42.3 bits (86), Expect(4) = 1e-043
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +3 / -3
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNS 113
D +RK VGKI+ A LT +CI LKQSP F S
Sbjct: 17432 DPKRKNNVVGKILLAASLTAVCIIMLKQSPTFNSPS 17325
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence
Length = 152544
Score = 77.6 bits (163), Expect(3) = 1e-043
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +3 / +2
Query: 231 DNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
DNLSRGN+GAVKVLQ LFP+PGRLQFI+ADLG+ K+VS
Sbjct: 82655 DNLSRGNLGAVKVLQELFPEPGRLQFIYADLGEPKTVS 82768
Score = 75.3 bits (158), Expect(3) = 1e-043
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = +3 / +2
Query: 117 FSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIV 230
FS E GV HVLVTGGAGYIGSHAALRLL+D YRVTIV
Sbjct: 82433 FSLREDGVIHVLVTGGAGYIGSHAALRLLKDGYRVTIV 82546
Score = 65.2 bits (136), Expect(3) = 5e-030
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = -1 / -1
Query: 241 DRLSTMVTR*LSCKSLKAACEPI*PAPPVTKTWVTPGSWREN 116
D +TMVTR* S KS AA EP+*PAPPVT+TW+TP S +EN
Sbjct: 82557 DEHTTMVTR*PSFKSRNAAWEPM*PAPPVTRTWITPSSRKEN 82432
Score = 61.6 bits (128), Expect(3) = 1e-043
Identities = 26/36 (72%), Positives = 29/36 (80%)
Frame = +1 / +1
Query: 415 FHLTASQVNKIFAENAFDAVMHFAAXAYVGESTLEP 522
F L QVN IF++NAFDAVMHFAA AYVGEST+ P
Sbjct: 82846 FPLPNFQVNSIFSQNAFDAVMHFAAVAYVGESTVYP 82953
Score = 56.5 bits (117), Expect(3) = 5e-030
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = -1 / -1
Query: 355 SIDEDTDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLS 230
S ++DT SP+SA +N SLPG GN C+T TAP FP +RLS
Sbjct: 82779 SNNKDTVLGSPKSAYIN*SLPGSGNNSCKTLTAPKFPRERLS 82654
Score = 46.4 bits (95), Expect(3) = 5e-030
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = -3 / -2
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
G VLSPT A AAKCITASNAF +LLT
Sbjct: 82952 GYTVLSPTYATAAKCITASNAFCEKMLLT 82866
>gb|BU891108.1|BU891108 P046A12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 555
Score = 172 bits (371), Expect = 1e-042
Identities = 76/104 (73%), Positives = 83/104 (79%)
Frame = +3 / +2
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D +RK VGKI+ A LT LCI LKQSP F S FS HE GV HVLVTGGAG+IGSH
Sbjct: 242 DPKRKNNVVGKILLAATLTALCIIMLKQSPTFYSPSPFSLHEEGVIHVLVTGGAGFIGSH 421
Query: 186 AALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFIFA 317
AALRLL+D YRVTIVDNLSRGN+GAVKVLQ LFP+P RLQFI+A
Sbjct: 422 AALRLLKDGYRVTIVDNLSRGNIGAVKVLQELFPEPRRLQFIYA 553
Score = 128 bits (275), Expect = 2e-029
Identities = 60/106 (56%), Positives = 69/106 (65%)
Frame = -1 / -1
Query: 319 SAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAPPVTKTWV 140
SA +N SL G GN C+T TAP+FP +RLSTMVTR* S KS AA EP+ PAPPVT+TW+
Sbjct: 555 SAYIN*SLRGSGNNSCKTLTAPMFPRERLSTMVTR*PSFKSRNAAWEPMKPAPPVTRTWI 376
Query: 139 TPGSWRENTLLPPKPGDCFRANIQSVVRTRAAMIFPTLRGFRLASK 2
TP S +EN L K GDCF I VR A IFPT F S+
Sbjct: 375 TPSSCKENGLGE*KVGDCFSIIIHKAVRVAAKRIFPTTLFFLFGSE 238
>gb|BI127738.1|BI127738 G065P17Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 471
Score = 133 bits (284), Expect(2) = 9e-039
Identities = 59/84 (70%), Positives = 64/84 (76%)
Frame = +3 / +1
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D +RK VGKI+ A LT LCI LKQSP F S S HE GV HVLVTGGAG+IGSH
Sbjct: 154 DPKRKNNVVGKILLAATLTALCIIMLKQSPTFYSPSPCSLHEEGVIHVLVTGGAGFIGSH 333
Query: 186 AALRLLQDSYRVTIVDNLSRGNMG 257
AALRLL+D YRVTIVDNLSRGN+G
Sbjct: 334 AALRLLKDGYRVTIVDNLSRGNIG 405
Score = 100 bits (214), Expect(2) = 3e-026
Identities = 47/85 (55%), Positives = 55/85 (64%)
Frame = -1 / -2
Query: 256 PIFPLDRLSTMVTR*LSCKSLKAACEPI*PAPPVTKTWVTPGSWRENTLLPPKPGDCFRA 77
P+FP +RLSTMVTR* S KS AA EP+ PAPPVT+TW+TP S +E+ L K GDCF
Sbjct: 404 PMFPRERLSTMVTR*PSFKSRNAAWEPMKPAPPVTRTWITPSSCKEHGLGE*KVGDCFSI 225
Query: 76 NIQSVVRTRAAMIFPTLRGFRLASK 2
I VR A IFPT F S+
Sbjct: 224 IIHKAVRVAAKRIFPTTLFFLFGSE 150
Score = 46.9 bits (96), Expect(2) = 9e-039
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3 / +2
Query: 255 GAVKVLQGLFPQPGRLQFIFAD 320
GAVKV+Q LFP+PGRLQFI+AD
Sbjct: 404 GAVKVVQELFPEPGRLQFIYAD 469
Score = 36.8 bits (74), Expect(2) = 3e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -1 / -1
Query: 322 RSAKMNCSLPGCGNKPCRTFTAP 254
RSA +N SLPG GN C T TAP
Sbjct: 471 RSAYIN*SLPGSGNNSCTTLTAP 403
>gb|CV253098.1|CV253098 PX0019.B21_H11 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_H11 3', mRNA sequence
Length = 570
Score = 123 bits (264), Expect = 6e-028
Identities = 55/77 (71%), Positives = 58/77 (75%)
Frame = +3 / -3
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D +RK VGKI+ A LT LCI LKQSP F S FS HE GV HVLVTGGAGYIGSH
Sbjct: 232 DPKRKNNVVGKILLAATLTALCIIMLKQSPTFYSPSPFSLHEEGVIHVLVTGGAGYIGSH 53
Query: 186 AALRLLQDSYRVTIVDN 236
AALRLL+D YRVTIVDN
Sbjct: 52 AALRLLKDGYRVTIVDN 2
>gb|DT500667.1|DT500667 PX0019.BR.1_H11 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_H11 5', mRNA sequence
Length = 563
Score = 123 bits (264), Expect = 6e-028
Identities = 55/77 (71%), Positives = 58/77 (75%)
Frame = +3 / +2
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D +RK VGKI+ A LT LCI LKQSP F S FS HE GV HVLVTGGAGYIGSH
Sbjct: 332 DPKRKNNVVGKILLAATLTALCIIMLKQSPTFYSPSPFSLHEEGVIHVLVTGGAGYIGSH 511
Query: 186 AALRLLQDSYRVTIVDN 236
AALRLL+D YRVTIVDN
Sbjct: 512 AALRLLKDGYRVTIVDN 562
>gb|DT518407.1|DT518407 WS02438.B21_A22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_A22 3', mRNA sequence
Length = 365
Score = 123 bits (264), Expect = 6e-028
Identities = 55/77 (71%), Positives = 58/77 (75%)
Frame = +3 / -2
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D +RK VGKI+ A LT LCI LKQSP F S FS HE GV HVLVTGGAGYIGSH
Sbjct: 232 DPKRKNNVVGKILLAATLTALCIIMLKQSPTFYSPSPFSLHEEGVIHVLVTGGAGYIGSH 53
Query: 186 AALRLLQDSYRVTIVDN 236
AALRLL+D YRVTIVDN
Sbjct: 52 AALRLLKDGYRVTIVDN 2
>gb|DN500074.1|DN500074 UB12CPA10.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB12CPA10 5', mRNA sequence
Length = 733
Score = 74.8 bits (157), Expect(2) = 3e-027
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = +3 / +1
Query: 210 SYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
S R+ + DNLSRGN+GAVKVL+ L P+P RLQFI+ADLGD K+V+
Sbjct: 118 SLRIFVQDNLSRGNLGAVKVLRDLLPEPRRLQFIYADLGDAKAVN 252
Score = 66.1 bits (138), Expect(2) = 3e-027
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +1 / +1
Query: 427 ASQVNKIFAENAFDAVMHFAAXAYVGESTLEP 522
A VNKIF ENAFDAVMHFAA AYVGEST+EP
Sbjct: 238 AKAVNKIFVENAFDAVMHFAAVAYVGESTMEP 333
>gb|BU820611.1|BU820611 UB12CPA10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 504
Score = 74.8 bits (157), Expect(2) = 3e-027
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = +3 / +1
Query: 210 SYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
S R+ + DNLSRGN+GAVKVL+ L P+P RLQFI+ADLGD K+V+
Sbjct: 118 SLRIFVQDNLSRGNLGAVKVLRDLLPEPRRLQFIYADLGDAKAVN 252
Score = 66.1 bits (138), Expect(2) = 3e-027
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +1 / +1
Query: 427 ASQVNKIFAENAFDAVMHFAAXAYVGESTLEP 522
A VNKIF ENAFDAVMHFAA AYVGEST+EP
Sbjct: 238 AKAVNKIFVENAFDAVMHFAAVAYVGESTMEP 333
>gb|CX184787.1|CX184787 C03_45-30_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 424
Score = 116 bits (249), Expect = 7e-026
Identities = 52/77 (67%), Positives = 56/77 (72%)
Frame = +3 / +3
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D +RK VGKI+ A LT +CI LK SP F S FS E GV HVLVTGGAGYIGSH
Sbjct: 192 DPKRKNNVVGKILLAASLTAVCIIMLKHSPTFNSPSPFSLREDGVIHVLVTGGAGYIGSH 371
Query: 186 AALRLLQDSYRVTIVDN 236
AALRLL+D YRVTIVDN
Sbjct: 372 AALRLLKDGYRVTIVDN 422
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 270,536,322
Number of Sequences: 369679
Number of extensions: 3926418
Number of successful extensions: 65207
Number of sequences better than 1.0e-020: 17
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 5971809598
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)