TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF4h05.yg.2.1
(697 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus t... 320 2e-096
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 135 2e-082
gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus t... 204 6e-063
gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus tr... 205 9e-062
gb|AI166257.1|AI166257 xylem.est.107 Poplar xylem Lambda ZA... 168 4e-041
gb|CA821982.1|CA821982 R02C12 two-month-old roots from clon... 158 3e-038
gb|BP925807.1|BP925807 BP925807 full-length enriched poplar... 122 2e-027
gb|BP924307.1|BP924307 BP924307 full-length enriched poplar... 103 1e-021
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 5', mRNA sequence
Length = 908
Score = 320 bits (694), Expect(2) = 2e-096
Identities = 129/159 (81%), Positives = 144/159 (90%)
Frame = -2 / +2
Query: 495 GKHYPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRI 316
G PSILG+REH+FTGSVSSLA FMSNQETSFVT+GQR+LANPLKVR HYGHPDVFDR+
Sbjct: 302 GVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLKVRFHYGHPDVFDRL 481
Query: 315 FHITRGGISKASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKV 136
FH+TRGG+SKAS+ IN+SEDI+AGFNSTLR+G +THHEYIQVGKGRDVGLNQI++FE K+
Sbjct: 482 FHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKI 661
Query: 135 AGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
A GNGEQ LSRDIYRLG FDFFRMLS Y TTVGFYF T
Sbjct: 662 ANGNGEQTLSRDIYRLGHRFDFFRMLSCYFTTVGFYFST 778
Score = 115 bits (246), Expect(2) = 7e-027
Identities = 63/157 (40%), Positives = 88/157 (56%)
Frame = +1 / -2
Query: 16 RGTEVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANL 195
+ EV++N V H EKVK +S+ +Y++ ++L +IS S F K NLI+++I NL
Sbjct: 781 QSAEVKTNCGEVARQHSEKVKAVSKPVYITTQSLLSISISYFGLKHRNLIEAHISPLPNL 602
Query: 196 NIFMMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQRVSK 375
IFMM T +E+ YI T ID R T++ +K IK I MTIV H +RV +
Sbjct: 601 YIFMMGNIPFT*CRIEAGKYIFTQIDNLRSFTDTPSSQVKKPIKYIRMTIVEPHLKRVGQ 422
Query: 376 NTLS*CHKTCLLIRHK*GQGGNTSREDMLPNTKNRRV 486
L+ HKT LI HK + NTS + ML K RR+
Sbjct: 421 *PLTDSHKTGFLI*HKPCKR*NTSSKYMLSKPKYRRI 311
Score = 98.2 bits (208), Expect(3) = 3e-038
Identities = 56/100 (56%), Positives = 60/100 (60%)
Frame = +2 / -3
Query: 197 IYS**VMHP*RRVELNPAYISSLILMLREAXXXXXXXXXXXXSKTSG*P*CILTFSGLAR 376
IYS* V P R VEL PA ISSL L+ EA S TSG*P* T GLA
Sbjct: 600 IYS*WVTFPSRSVELKPANISSLRLITLEALLTPPLVK*KSLSNTSG*P*WNRTLRGLAN 421
Query: 377 TRCPNVTKLVS*LDINEAREETLPVKTCSLTPRIEG*CLP 496
+ P VTKLVS* DIN AR+ETLPV CSL+P IEG P
Sbjct: 420 SL*PIVTKLVS*FDINHARDETLPVNICSLSPSIEGFLTP 301
Score = 68.4 bits (143), Expect(3) = 3e-038
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = +2 / -3
Query: 14 VEVQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSNSAI 160
+ V K* PTVV *+D+I KKSK CPS Y+SRL+ CSPFP A SN I
Sbjct: 783 IRVLK*KPTVVK*QDSIRKKSKRCPSRYISRLKVCSPFPLAILASNIEI 637
Score = 51.9 bits (107), Expect(2) = 2e-096
Identities = 23/38 (60%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 612 HXIIFTXXNAXXTIDMNQDXXXEXALKMRNLLEEFSLK 499
H IIFT IDMNQD E ALKMRNLL+EF K
Sbjct: 182 HAIIFTRGEGLQAIDMNQDNYMEEALKMRNLLQEFLKK 295
Score = 29.9 bits (59), Expect(3) = 3e-038
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2 / -3
Query: 500 FRENSSSRFLILSAXSX*XS*FISIVXXAXXXVNI 604
F NS S+FLI A S * S FISI V I
Sbjct: 294 FLRNSCSKFLIFKASSM*LSWFISIACKPSPRVKI 190
Score = 24.9 bits (48), Expect(2) = 7e-027
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1 / -2
Query: 499 LQRELLKQVSHFKCLLXXXILIHI 570
L ++ L+Q+ HF+ IL+HI
Sbjct: 295 LFKKFLQQIPHFQGFFHVVILVHI 224
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 135 bits (289), Expect(6) = 2e-082
Identities = 52/60 (86%), Positives = 59/60 (98%)
Frame = -2 / +1
Query: 198 IQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
++VGKGRDVGLNQIA+FEGKV+GGNGEQVLSRD+YRLGQLFDFFRM+SFY TTVG+YFCT
Sbjct: 26011 LKVGKGRDVGLNQIAVFEGKVSGGNGEQVLSRDVYRLGQLFDFFRMMSFYFTTVGYYFCT 26190
Score = 93.2 bits (197), Expect(6) = 2e-082
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = -2 / +3
Query: 360 KVRMHYGHPDVFDRIFHITRGGISKASRSINISEDIYAGFNSTL 229
+VRMHYGHPDVFDR+FHITRGGISKASR INISEDIY+G + L
Sbjct: 25269 RVRMHYGHPDVFDRVFHITRGGISKASRVINISEDIYSGMTALL 25400
Score = 79.0 bits (166), Expect(6) = 1e-044
Identities = 36/47 (76%), Positives = 37/47 (78%)
Frame = +2 / -1
Query: 20 VQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSNSAI 160
VQK* PTVV * D I KKSKSCPSL S LRTCSP PP TFPSN+AI
Sbjct: 26189 VQK*YPTVVK*NDIIRKKSKSCPSL*TSLLRTCSPLPPETFPSNTAI 26049
Score = 65.7 bits (137), Expect(6) = 2e-082
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2 / +3
Query: 444 SVSSLASFMSNQETSFVTLGQRVLANPLK 358
SVSSLASFMSNQETSFVTLGQRVLANPLK
Sbjct: 25098 SVSSLASFMSNQETSFVTLGQRVLANPLK 25184
Score = 64.3 bits (134), Expect(6) = 1e-044
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = +1 / -1
Query: 250 IYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHS 354
IYI TD+D RGL N+TP Y++NS+KNIWM+I+H+
Sbjct: 25379 IYIFTDVDNTRGLANTTPSYVENSVKNIWMSIMHT 25275
Score = 58.3 bits (121), Expect(6) = 2e-082
Identities = 26/38 (68%), Positives = 27/38 (71%)
Frame = -2 / +3
Query: 558 DXXXEXALKMRNLLEEFSLKRGKHYPSILGVREHVFTG 445
D E ALKMRNLLEEF G P+ILGVREHVFTG
Sbjct: 24900 DNYFEEALKMRNLLEEFHQDHGIRPPTILGVREHVFTG 25013
Score = 54.7 bits (113), Expect(6) = 1e-044
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +2 / -2
Query: 359 FSGLARTRCPNVTKLVS*LDINEAREETL 445
F GLARTR P VTKLVS* DINEA+EETL
Sbjct: 25183 FKGLARTRWPRVTKLVS*FDINEAKEETL 25097
Score = 48.3 bits (99), Expect(6) = 1e-044
Identities = 26/43 (60%), Positives = 28/43 (65%)
Frame = +2 / -2
Query: 434 EETLPVKTCSLTPRIEG*CLPRFRENSSSRFLILSAXSX*XS* 562
E LPV TCSLTPR+ G +P NSSSRFLI A S * S*
Sbjct: 25024 ETYLPVNTCSLTPRMVGGRIP*S*WNSSSRFLIFKASSK*LS* 24896
Score = 48.3 bits (99), Expect(6) = 2e-082
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = -2 / +2
Query: 252 YAGFNSTLRQGCITHHEYIQV 190
+AGFNSTLRQG +THHEYIQV
Sbjct: 25886 HAGFNSTLRQGNVTHHEYIQV 25948
Score = 35.4 bits (71), Expect(6) = 2e-082
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -2 / +1
Query: 651 NPKXXXXXXXXXXHXIIFTXXNAXXTIDMNQ 559
NPK H IIFT NA TIDMNQ
Sbjct: 22501 NPKLGEGKPENQNHAIIFTRGNAIQTIDMNQ 22593
Score = 30.9 bits (61), Expect(6) = 1e-044
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1 / -3
Query: 559 LIHINSXXCIXXSKYYXMXXXXXXXXXXLWIXXXXXXXXFL 681
LIHIN CI SKY M WI FL
Sbjct: 22593 LIHINCLNCISTSKYNCMVLILRFSFSKFWIPRQLNRVYFL 22471
Score = 29.9 bits (59), Expect(6) = 1e-044
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +2 / -3
Query: 197 IYS**VMHP*RRVELNPAY 253
IYS* V P RRVELNPA+
Sbjct: 25941 IYS*WVTFPWRRVELNPAW 25885
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 5', mRNA sequence
Length = 872
Score = 204 bits (439), Expect(3) = 6e-063
Identities = 82/109 (75%), Positives = 95/109 (87%)
Frame = -2 / +2
Query: 495 GKHYPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRI 316
G PSILG+REH+FTGSVSSLA FMSNQETSFVT+GQR+LANPLKVR HYGHPDVFDR+
Sbjct: 299 GVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLKVRFHYGHPDVFDRL 478
Query: 315 FHITRGGISKASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVG 169
FH+TRGG+SKAS+ IN+SEDI+AGFNSTLR+G +THHE V +G G
Sbjct: 479 FHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHENXPVWEGERCG 625
Score = 116 bits (248), Expect(2) = 1e-036
Identities = 48/69 (69%), Positives = 54/69 (78%)
Frame = -2 / +3
Query: 225 QGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYV 46
+G + + Q GKGRDVGLNQI++FE K+A GNGEQ LSRDIYRLG FDFFRMLS Y
Sbjct: 570 KGMLPIMKIXQFGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYF 749
Query: 45 TTVGFYFCT 19
TTVGFYF T
Sbjct: 750 TTVGFYFST 776
Score = 94.5 bits (200), Expect(3) = 4e-037
Identities = 54/99 (54%), Positives = 59/99 (59%)
Frame = +2 / -3
Query: 200 YS**VMHP*RRVELNPAYISSLILMLREAXXXXXXXXXXXXSKTSG*P*CILTFSGLART 379
+S* V P R VEL PA ISSL L+ EA S TSG*P* T GLA +
Sbjct: 594 FS*WVTFPSRSVELKPANISSLRLITLEALLTPPLVK*KSLSNTSG*P*WNRTLRGLANS 415
Query: 380 RCPNVTKLVS*LDINEAREETLPVKTCSLTPRIEG*CLP 496
P VTKLVS* DIN AR+ETLPV CSL+P IEG P
Sbjct: 414 L*PIVTKLVS*FDINHARDETLPVNICSLSPSIEGFLTP 298
Score = 73.0 bits (153), Expect(3) = 2e-023
Identities = 42/101 (41%), Positives = 53/101 (52%)
Frame = +1 / -2
Query: 184 FANLNIFMMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQ 363
F N IFMM T +E+ YI T ID R T++ +K IK I MTIV H +
Sbjct: 610 FPNWXIFMMGNIPFT*CRIEAGKYIFTQIDNLRSFTDTPSSQVKKPIKYIRMTIVEPHLK 431
Query: 364 RVSKNTLS*CHKTCLLIRHK*GQGGNTSREDMLPNTKNRRV 486
RV + L+ HKT LI HK + NTS + ML K RR+
Sbjct: 430 RVGQ*PLTDSHKTGFLI*HKPCKR*NTSSKYMLSKPKYRRI 308
Score = 68.4 bits (143), Expect(3) = 4e-037
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = +2 / -2
Query: 14 VEVQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSNSAI 160
+ V K* PTVV *+D+I KKSK CPS Y+SRL+ CSPFP A SN I
Sbjct: 781 IRVLK*KPTVVK*QDSIRKKSKRCPSRYISRLKVCSPFPLAILASNIEI 635
Score = 57.0 bits (118), Expect(2) = 1e-036
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = -1 / +1
Query: 496 WQALPFYSWC*GACLHGKCFLPGLIYV*SGDKFCDIRTACSC*PAESENALWSSRCF**N 317
W F +W * A ++ KCF+ ++YV SG++FCD R+ P+ LWSS C **
Sbjct: 298 WCEESFDTWA*RAYIYWKCFISCMVYVKSGNQFCDYRSEAIGQPS*GAVPLWSSGCI**A 477
Query: 316 FS 311
FS
Sbjct: 478 FS 483
Score = 51.9 bits (107), Expect(3) = 6e-063
Identities = 23/38 (60%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 612 HXIIFTXXNAXXTIDMNQDXXXEXALKMRNLLEEFSLK 499
H IIFT IDMNQD E ALKMRNLL+EF K
Sbjct: 179 HAIIFTRGEGLQAIDMNQDNYMEEALKMRNLLQEFLKK 292
Score = 48.7 bits (100), Expect(3) = 2e-023
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +1 / -1
Query: 16 RGTEVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANL 195
+ EV++N V H EKVK +S+ +Y++ ++L +IS S F K NLI+++I L
Sbjct: 779 QSAEVKTNCGEVARQHSEKVKAVSKPVYITTQSLLSISISYFGLKHRNLIEAHISPLPKL 600
Query: 196 NIF 204
F
Sbjct: 599 GNF 591
Score = 29.9 bits (59), Expect(3) = 4e-037
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2 / -3
Query: 500 FRENSSSRFLILSAXSX*XS*FISIVXXAXXXVNI 604
F NS S+FLI A S * S FISI V I
Sbjct: 291 FLRNSCSKFLIFKASSM*LSWFISIACKPSPRVKI 187
Score = 24.9 bits (48), Expect(3) = 2e-023
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1 / -2
Query: 499 LQRELLKQVSHFKCLLXXXILIHI 570
L ++ L+Q+ HF+ IL+HI
Sbjct: 292 LFKKFLQQIPHFQGFFHVVILVHI 221
Score = 24.0 bits (46), Expect(3) = 6e-063
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1 / +2
Query: 85 TTF*LFQDVILLRDNCWILLLYLD 14
T *LF + +LL + W LL + D
Sbjct: 710 TPL*LFPNAVLLLHHSWFLLQHSD 781
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
5', mRNA sequence
Length = 599
Score = 205 bits (442), Expect(2) = 9e-062
Identities = 81/100 (81%), Positives = 93/100 (93%)
Frame = -2 / +2
Query: 495 GKHYPSILGVREHVFTGSVSSLASFMSNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRI 316
G PSILG+REH+FTGSVSSLA FMSNQETSFVT+GQR+LANPLKVR HYGHPDVFDR+
Sbjct: 299 GVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLKVRFHYGHPDVFDRL 478
Query: 315 FHITRGGISKASRSINISEDIYAGFNSTLRQGCITHHEYI 196
FH+TRGG+SKAS+ IN+SEDI+AGFNSTLR+G +THHEYI
Sbjct: 479 FHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYI 598
Score = 98.2 bits (208), Expect(2) = 3e-023
Identities = 56/100 (56%), Positives = 60/100 (60%)
Frame = +2 / -3
Query: 197 IYS**VMHP*RRVELNPAYISSLILMLREAXXXXXXXXXXXXSKTSG*P*CILTFSGLAR 376
IYS* V P R VEL PA ISSL L+ EA S TSG*P* T GLA
Sbjct: 597 IYS*WVTFPSRSVELKPANISSLRLITLEALLTPPLVK*KSLSNTSG*P*WNRTLRGLAN 418
Query: 377 TRCPNVTKLVS*LDINEAREETLPVKTCSLTPRIEG*CLP 496
+ P VTKLVS* DIN AR+ETLPV CSL+P IEG P
Sbjct: 417 SL*PIVTKLVS*FDINHARDETLPVNICSLSPSIEGFLTP 298
Score = 51.9 bits (107), Expect(2) = 9e-062
Identities = 23/38 (60%), Positives = 24/38 (63%)
Frame = -2 / +2
Query: 612 HXIIFTXXNAXXTIDMNQDXXXEXALKMRNLLEEFSLK 499
H IIFT IDMNQD E ALKMRNLL+EF K
Sbjct: 179 HAIIFTRGEGLQAIDMNQDNYMEEALKMRNLLQEFLKK 292
Score = 29.9 bits (59), Expect(2) = 3e-023
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2 / -3
Query: 500 FRENSSSRFLILSAXSX*XS*FISIVXXAXXXVNI 604
F NS S+FLI A S * S FISI V I
Sbjct: 291 FLRNSCSKFLIFKASSM*LSWFISIACKPSPRVKI 187
>gb|AI166257.1|AI166257 xylem.est.107 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 583
Score = 168 bits (361), Expect = 4e-041
Identities = 67/83 (80%), Positives = 74/83 (89%)
Frame = -2 / +2
Query: 267 ISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRL 88
+SEDI+AGFNSTLR+G +THHEYIQVGKGRDVGLNQI++FE K+A GNGEQ LSRDIYRL
Sbjct: 2 LSEDIFAGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRL 181
Query: 87 GQLFDFFRMLSFYVTTVGFYFCT 19
G FDFFRMLS Y TTVGFYF T
Sbjct: 182 GHRFDFFRMLSCYFTTVGFYFST 250
>gb|CA821982.1|CA821982 R02C12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 291
Score = 158 bits (340), Expect(2) = 3e-038
Identities = 67/82 (81%), Positives = 72/82 (87%)
Frame = -2 / +2
Query: 318 IFHITRGGISKASRSINISEDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGK 139
++ GISKASR INISEDI+AGFN+TLRQG HEYIQVGKGRDVGLNQIALFEGK
Sbjct: 11 LYFYNSSGISKASRVINISEDIFAGFNTTLRQGKYYSHEYIQVGKGRDVGLNQIALFEGK 190
Query: 138 VAGGNGEQVLSRDIYRLGQLFD 73
VAGGNGEQVLSRD+YRLGQLFD
Sbjct: 191 VAGGNGEQVLSRDVYRLGQLFD 256
Score = 19.4 bits (36), Expect(2) = 3e-038
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / +1
Query: 72 FFRMLSF 52
FFRMLSF
Sbjct: 256 FFRMLSF 276
>gb|BP925807.1|BP925807 BP925807 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-050_P13.f 5', mRNA sequence
Length = 365
Score = 122 bits (262), Expect = 2e-027
Identities = 49/55 (89%), Positives = 52/55 (94%)
Frame = -2 / +1
Query: 183 GRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
G DVGLNQIALFEG+VAGGNGEQVLSRD+YRLGQLFDFFRMLSFY TTVG+Y CT
Sbjct: 16 GGDVGLNQIALFEGRVAGGNGEQVLSRDVYRLGQLFDFFRMLSFYFTTVGYYVCT 180
>gb|BP924307.1|BP924307 BP924307 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_I23.f 5', mRNA sequence
Length = 342
Score = 103 bits (220), Expect = 1e-021
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = -2 / +1
Query: 168 LNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
+NQIALFEGKVA GNGEQVLS D+YRLGQL DFFRMLSFY TTVG+Y CT
Sbjct: 4 VNQIALFEGKVA*GNGEQVLSSDVYRLGQLLDFFRMLSFYFTTVGYYVCT 153
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 260,940,073
Number of Sequences: 369679
Number of extensions: 3309408
Number of successful extensions: 26955
Number of sequences better than 1.0e-020: 9
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8695744820
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)