TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCA10g02.yg.2.1
         (277 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CK090275.1|CK090275  C084P86.3pR Populus strain T89 leave...    67   4e-024
gb|CK100777.1|CK100777  C084P86.5pR Populus strain T89 leave...    67   2e-021

>gb|CK090275.1|CK090275 C084P86.3pR Populus strain T89 leaves Populus tremula x Populus
           tremuloides cDNA clone C084P86 3', mRNA sequence
          Length = 589

 Score = 66.6 bits (139), Expect(3) = 4e-024
 Identities = 24/35 (68%), Positives = 31/35 (88%)
 Frame = -3 / +2

                                              
Query: 107 KEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
           KE+LWP++ EFVDGAL HI+NM++ALGEQV  G+P
Sbjct: 440 KESLWPWIPEFVDGALNHIVNMARALGEQVNGGKP 544




 Score = 55.1 bits (114), Expect(3) = 4e-024
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = -3 / +1

                                               
Query: 275 RVDLFTRQVSSPDVDWSYGEPTEMLCSGSNDGEGMG 168
           RVDL TRQ++SP+VD+SYGEP EML   S+D    G
Sbjct: 310 RVDLLTRQITSPEVDFSYGEPIEMLSCPSDDSGSCG 417




 Score = 23.1 bits (44), Expect(3) = 4e-024
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3 / +1

                     
Query: 164 SAGAYIVRIP 135
           S GAYI+RIP
Sbjct: 409 SCGAYIIRIP 438



>gb|CK100777.1|CK100777 C084P86.5pR Populus strain T89 leaves Populus tremula x Populus
           tremuloides cDNA clone C084P86 5', mRNA sequence
          Length = 437

 Score = 66.6 bits (139), Expect(3) = 2e-021
 Identities = 24/35 (68%), Positives = 31/35 (88%)
 Frame = -3 / -2

                                              
Query: 107 KEALWPYLQEFVDGALAHILNMSKALGEQVGNGRP 3
           KE+LWP++ EFVDGAL HI+NM++ALGEQV  G+P
Sbjct: 319 KESLWPWIPEFVDGALNHIVNMARALGEQVNGGKP 215




 Score = 45.1 bits (92), Expect(3) = 2e-021
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = -3 / -1

                                          
Query: 260 TRQVSSPDVDWSYGEPTEMLCSGSNDGEGMG 168
           TRQ++SP+VD+SYGEP E+L   S+D    G
Sbjct: 434 TRQITSPEVDFSYGEPIELLSCPSDDSGSCG 342




 Score = 23.1 bits (44), Expect(3) = 2e-021
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3 / -1

                     
Query: 164 SAGAYIVRIP 135
           S GAYI+RIP
Sbjct: 350 SCGAYIIRIP 321



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 154,824,238
Number of Sequences: 369679
Number of extensions: 2105963
Number of successful extensions: 199469
Number of sequences better than 1.0e-020: 2
length of database: 67,802,888
effective HSP length: 48
effective length of database: 50,058,296
effective search space used: 2152506728
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)