TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P22F020924.3.1
(714 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT506959.1|DT506959 WS02416.BR_P16 PTxD-ICC-N-A-14 Popul... 236 1e-061
gb|BP922291.1|BP922291 BP922291 full-length enriched poplar... 235 2e-061
gb|BU872292.1|BU872292 Q041D05 Populus flower cDNA library ... 233 7e-061
gb|CK318873.1|CK318873 X9P04c11 Populus stem seasonal libra... 228 2e-059
gb|CK319184.1|CK319184 X9P07g12 Populus stem seasonal libra... 227 6e-059
gb|AJ771657.1|AJ771657 AJ771657 Populus euphratica root 3-6... 109 3e-041
gb|CN523641.1|CN523641 GQ015M10.T3_D04 GQ015 Populus tricho... 155 3e-037
gb|BP926289.1|BP926289 BP926289 full-length enriched poplar... 148 3e-035
gb|CV246714.1|CV246714 WS01111.B21_K24 PT-P-FL-A-2 Populus ... 92 1e-034
gb|DN500775.1|DN500775 UL85TG07.5pR Populus cold stressed l... 86 2e-032
gb|CK090845.1|CK090845 F027P79.3pR Populus flower cDNA libr... 117 2e-032
gb|CV241478.1|CV241478 WS02512.B21_F06 PT-MB-N-A-15 Populus... 84 2e-032
gb|BU897134.1|BU897134 X051H09 Populus wood cDNA library Po... 116 1e-025
>gb|DT506959.1|DT506959 WS02416.BR_P16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_P16 5', mRNA sequence
Length = 820
Score = 236 bits (510), Expect = 1e-061
Identities = 100/133 (75%), Positives = 112/133 (84%)
Frame = +2 / +1
Query: 314 GDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQ 493
GDQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIFISSS DQ
Sbjct: 34 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQKARQQGIFISSSGDQ 213
Query: 494 SHSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRL 673
+HSMSGNGA AFD EYARWLEEHNRQISELRA V++HA DT+LR++VD + SH+ ++FRL
Sbjct: 214 THSMSGNGALAFDAEYARWLEEHNRQISELRAAVNSHAGDTELRTIVDNVASHFSDVFRL 393
Query: 674 KGNAAKADVFHVL 712
KG AAKADVFH+L
Sbjct: 394 KGTAAKADVFHIL 432
Score = 115 bits (246), Expect = 3e-025
Identities = 64/142 (45%), Positives = 85/142 (59%)
Frame = +3 / +2
Query: 288 PVTDPKTNMEIKRHCAALLKIVRLQGRAD*GRRHMFNSWRIAG*NLPN*SKSCKELVSRA 467
PVT + I+R LLKIV+L +AD*G++HM+N+WR AG*+ N SKS ++ +R
Sbjct: 8 PVTSQRKEQGIRRL*EGLLKIVKLPEKAD*GKKHMYNNWRAAG*S*LNWSKSSRKPGNRE 187
Query: 468 FLYLVQLISHTP*VEMGHRPLIWSMRGGWKSTIGKLVN*GLVSVLMQVILIFEVLLIRSC 647
F + Q *VEM L+ SM GG K+ GK V+*GL S+ MQ IL F +L
Sbjct: 188 FSFQAQETKPIQ*VEMVPWHLMQSMHGG*KNITGK*VS*GLQSIRMQEILNFVLLSTMLL 367
Query: 648 HTMMRFLGSKAMQPRQMFFTSY 713
HT + F G KA+ + MF TSY
Sbjct: 368 HTSVMFSG*KALLQKLMFSTSY 433
Score = 92.3 bits (195), Expect(2) = 8e-025
Identities = 48/109 (44%), Positives = 58/109 (53%)
Frame = -1 / -3
Query: 714 DKT*KTSALAALPLSLKISS*CDMILSTTLRRXXXXXXXXXXXXXXLICRLCSSNHLAYS 535
D+ KTSA AA+P SLK S C+ LST +R LIC LCSS+H AYS
Sbjct: 434 DRMWKTSAFAAVPFSLKTSLKCEATLSTIVRSSVSPACELTAALSSLICLLCSSSHRAYS 255
Query: 534 ISKADAPFPLMECD*STELDIKMPC*RAXXXXXXXXXXXXXXXSNC*TY 388
S A APFPL+E S EL++K+PC RA S+C TY
Sbjct: 254 ASNAKAPFPLIEWVWSPELEMKIPCCRAFWSSCSS*VSFSRLLSSCCTY 108
Score = 41.4 bits (84), Expect(2) = 8e-025
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -2 / -1
Query: 407 SPTVEHMPSSLVGSSLQPHDFEQGGAMSFDLHVCLWICHWSQ 282
SP V HM SL+G Q HDFEQ S D + CHW++
Sbjct: 127 SPVVVHMLFSLIGFFWQLHDFEQAFLKSSDPLLFPLTCHWNR 2
>gb|BP922291.1|BP922291 BP922291 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-006_B11.f 5', mRNA sequence
Length = 522
Score = 235 bits (508), Expect = 2e-061
Identities = 100/133 (75%), Positives = 112/133 (84%)
Frame = +2 / +1
Query: 314 GDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQ 493
GDQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIFISSS DQ
Sbjct: 115 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQKARQQGIFISSSGDQ 294
Query: 494 SHSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRL 673
+HSMSGNGA AFD EYARWLEEHNRQISELRA V++HA DT+LR++VD + SH+ ++FRL
Sbjct: 295 THSMSGNGALAFDAEYARWLEEHNRQISELRAAVNSHAGDTELRTIVDNVASHFSDVFRL 474
Query: 674 KGNAAKADVFHVL 712
KG AAKADVFH+L
Sbjct: 475 KGAAAKADVFHIL 513
Score = 119 bits (254), Expect = 2e-026
Identities = 65/142 (45%), Positives = 86/142 (60%)
Frame = +3 / +2
Query: 288 PVTDPKTNMEIKRHCAALLKIVRLQGRAD*GRRHMFNSWRIAG*NLPN*SKSCKELVSRA 467
PVT + I+R LLKIV+L +AD*G++HM+N+WR AG*+ N SKS ++ +R
Sbjct: 89 PVTSQRKEQGIRRL*EGLLKIVKLPEKAD*GKKHMYNNWRAAG*S*LNLSKSSRKPGNRE 268
Query: 468 FLYLVQLISHTP*VEMGHRPLIWSMRGGWKSTIGKLVN*GLVSVLMQVILIFEVLLIRSC 647
F + Q *VEM L+ SM GG K+ GK V+*GL S+ MQ IL F +L
Sbjct: 269 FSFQAQETKPIQ*VEMVPWHLMQSMHGG*KNITGK*VS*GLQSIRMQEILNFVLLSTMLL 448
Query: 648 HTMMRFLGSKAMQPRQMFFTSY 713
HT + F G KA+ P+ MF TSY
Sbjct: 449 HTSVMFSG*KALLPKLMFSTSY 514
>gb|BU872292.1|BU872292 Q041D05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 617
Score = 233 bits (504), Expect = 7e-061
Identities = 99/132 (75%), Positives = 111/132 (84%)
Frame = +2 / +2
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIFISSS DQ+
Sbjct: 26 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQKARQQGIFISSSGDQT 205
Query: 497 HSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLK 676
HSMSGNGA AFD EYARWLEEHNRQISELRA V++HA DT+LR++VD + SH+ ++FRLK
Sbjct: 206 HSMSGNGALAFDAEYARWLEEHNRQISELRAAVNSHAGDTELRTIVDNVASHFSDVFRLK 385
Query: 677 GNAAKADVFHVL 712
G AAKADVFH+L
Sbjct: 386 GTAAKADVFHIL 421
Score = 106 bits (227), Expect = 1e-022
Identities = 60/132 (45%), Positives = 80/132 (60%)
Frame = +3 / +3
Query: 318 IKRHCAALLKIVRLQGRAD*GRRHMFNSWRIAG*NLPN*SKSCKELVSRAFLYLVQLISH 497
I+R LLKIV+L +AD*G++HM+N+WR AG + N SKS ++ +R F + Q
Sbjct: 27 IRRL*EGLLKIVKLPEKAD*GKKHMYNNWRAAGSS*LNWSKSSRKPGNREFSFQAQGTKP 206
Query: 498 TP*VEMGHRPLIWSMRGGWKSTIGKLVN*GLVSVLMQVILIFEVLLIRSCHTMMRFLGSK 677
*VEM L+ SM GG K+ IGK +*GL S+ MQ IL F +L HT + F G K
Sbjct: 207 IQ*VEMVPWHLMQSMHGG*KNIIGK*AS*GLQSIRMQEILNFVLLSTMLLHTSVMFSG*K 386
Query: 678 AMQPRQMFFTSY 713
A+ + MF TSY
Sbjct: 387 ALLQKLMFSTSY 422
Score = 92.3 bits (195), Expect(2) = 2e-022
Identities = 48/109 (44%), Positives = 58/109 (53%)
Frame = -1 / -3
Query: 714 DKT*KTSALAALPLSLKISS*CDMILSTTLRRXXXXXXXXXXXXXXLICRLCSSNHLAYS 535
D+ KTSA AA+P SLK S C+ LST +R LIC LCSS+H AYS
Sbjct: 423 DRMWKTSAFAAVPFSLKTSLKCEATLSTIVRSSVSPACELTAALSSLICLLCSSSHRAYS 244
Query: 534 ISKADAPFPLMECD*STELDIKMPC*RAXXXXXXXXXXXXXXXSNC*TY 388
S A APFPL+E S EL++K+PC RA S+C TY
Sbjct: 243 ASNAKAPFPLIEWVWSPELEMKIPCCRAFWSSCSS*VSLSRLLSSCCTY 97
Score = 33.6 bits (67), Expect(2) = 2e-022
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -2 / -1
Query: 407 SPTVEHMPSSLVGSSLQPHDFEQGGAMSFD 318
SP V HM SL+G Q HDFEQ S D
Sbjct: 116 SPVVVHMLFSLIGFFWQLHDFEQAFLKSSD 27
>gb|CK318873.1|CK318873 X9P04c11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 689
Score = 228 bits (493), Expect = 2e-059
Identities = 96/132 (72%), Positives = 111/132 (84%)
Frame = +2 / +3
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIF+SSS +QS
Sbjct: 150 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFVSSSGEQS 329
Query: 497 HSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLK 676
HSMSGNGA AFD+EYARWLE+ NRQI+ELR+ V++H DT+LR ++D IM+HYDE+FRLK
Sbjct: 330 HSMSGNGAMAFDVEYARWLEDQNRQINELRSAVNSHTGDTELRIIIDGIMAHYDEVFRLK 509
Query: 677 GNAAKADVFHVL 712
NAAKADVFH+L
Sbjct: 510 SNAAKADVFHLL 545
Score = 103 bits (220), Expect = 1e-021
Identities = 57/127 (44%), Positives = 80/127 (62%)
Frame = +3 / +1
Query: 321 KRHCAALLKIVRLQGRAD*GRRHMFNSWRIAG*NLPN*SKSCKELVSRAFLYLVQLISHT 500
+R LLKI +LQ +A *GR+HM +SWR+AG*+ PN ++S SR F Y Q +
Sbjct: 154 RRLFVGLLKIEKLQEKAV*GRKHMSSSWRVAG*S*PNWNRSFNGHGSREFSYQAQENNLI 333
Query: 501 P*VEMGHRPLIWSMRGGWKSTIGKLVN*GLVSVLMQVILIFEVLLIRSCHTMMRFLGSKA 680
*VEMG L+ +M GW++ I KL++* +S+L +VI F + L+ MM+F G +A
Sbjct: 334 Q*VEMGPWHLM*NMHDGWRTKIDKLMS*DQLSILTRVIQNFVLSLMV*WLIMMKFSG*RA 513
Query: 681 MQPRQMF 701
MQPR MF
Sbjct: 514 MQPRLMF 534
>gb|CK319184.1|CK319184 X9P07g12 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 724
Score = 227 bits (490), Expect = 6e-059
Identities = 96/132 (72%), Positives = 110/132 (83%)
Frame = +2 / +2
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIF+SSS +QS
Sbjct: 71 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFVSSSGEQS 250
Query: 497 HSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLK 676
HSMSGNGA AFD+EYARWLE+ NRQI+ELR+ V++H DT+LR + D IM+HYDE+FRLK
Sbjct: 251 HSMSGNGAMAFDVEYARWLEDQNRQINELRSAVNSHTGDTELRIITDGIMAHYDEVFRLK 430
Query: 677 GNAAKADVFHVL 712
NAAKADVFH+L
Sbjct: 431 SNAAKADVFHLL 466
Score = 106 bits (226), Expect = 2e-022
Identities = 58/127 (45%), Positives = 81/127 (63%)
Frame = +3 / +3
Query: 321 KRHCAALLKIVRLQGRAD*GRRHMFNSWRIAG*NLPN*SKSCKELVSRAFLYLVQLISHT 500
+R LLKI +LQ +A *GR+HM +SWR+AG*+ PN ++S SR FLY Q +
Sbjct: 75 RRLFVGLLKIEKLQEKAV*GRKHMSSSWRVAG*S*PNWNRSFNGHGSREFLYQAQENNLI 254
Query: 501 P*VEMGHRPLIWSMRGGWKSTIGKLVN*GLVSVLMQVILIFEVLLIRSCHTMMRFLGSKA 680
*VEMG L+ +M GW++ I KL++* +S+L +VI F + L+ MM+F G +A
Sbjct: 255 Q*VEMGPWHLM*NMHDGWRTKIDKLMS*DQLSILTRVIQNFVLSLMV*WLIMMKFSG*RA 434
Query: 681 MQPRQMF 701
MQPR MF
Sbjct: 435 MQPRLMF 455
>gb|AJ771657.1|AJ771657 AJ771657 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600003G12F1, mRNA sequence
Length = 653
Score = 109 bits (232), Expect(2) = 3e-041
Identities = 44/66 (66%), Positives = 54/66 (81%)
Frame = +2 / +1
Query: 512 NGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+GA+ FDMEYARWLE+ +R +SELR G+ AH SD DLR +VD +SHYDEIFRLK AAK
Sbjct: 454 SGAAIFDMEYARWLEDDHRHMSELRTGLQAHLSDGDLRVIVDGYISHYDEIFRLKVVAAK 633
Query: 692 ADVFHV 709
+DVFH+
Sbjct: 634 SDVFHL 651
Score = 79.4 bits (167), Expect(2) = 3e-041
Identities = 37/68 (54%), Positives = 43/68 (63%)
Frame = +2 / +1
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
D KTLRRLAQNREAA+KSRLRKKAYVQQLE SR+KLT G+F+
Sbjct: 262 DAKTLRRLAQNREAAKKSRLRKKAYVQQLETSRIKLTQLEQDLQRARQQGLFLGGCGGAG 441
Query: 497 HSMSGNGA 520
++S A
Sbjct: 442 GNISSGAA 465
>gb|CN523641.1|CN523641 GQ015M10.T3_D04 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M10_D04 5', mRNA sequence
Length = 792
Score = 155 bits (333), Expect = 3e-037
Identities = 61/83 (73%), Positives = 74/83 (89%)
Frame = +2 / +2
Query: 464 GIFISSSVDQSHSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKI 643
GIFISSS DQ+HSMSGNGA AFD+EYARWLEE NRQI+ELR+ V++HA D +LR ++D I
Sbjct: 35 GIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGI 214
Query: 644 MSHYDEIFRLKGNAAKADVFHVL 712
M+HYDE+F+LK NAAKADVFH+L
Sbjct: 215 MAHYDEVFKLKSNAAKADVFHLL 283
>gb|BP926289.1|BP926289 BP926289 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-057_J18.f 5', mRNA sequence
Length = 362
Score = 148 bits (318), Expect = 3e-035
Identities = 66/83 (79%), Positives = 68/83 (81%)
Frame = +2 / +2
Query: 314 GDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQ 493
GDQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIFISSS DQ
Sbjct: 113 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQKARQQGIFISSSGDQ 292
Query: 494 SHSMSGNGASAFDMEYARWLEEH 562
+HSMSGNGA AFD EYARWLEEH
Sbjct: 293 THSMSGNGALAFDAEYARWLEEH 361
>gb|CV246714.1|CV246714 WS01111.B21_K24 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_K24 3', mRNA sequence
Length = 683
Score = 91.8 bits (194), Expect(2) = 1e-034
Identities = 33/66 (50%), Positives = 52/66 (78%)
Frame = +2 / -1
Query: 515 GASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAKA 694
G +AF+MEY W+EE ++QISELR + AH +D +LR +V+ ++HY+ +FR+K +AAKA
Sbjct: 476 GIAAFEMEYGHWVEEQHKQISELRKALQAHITDIELRILVENGLNHYNNLFRMKADAAKA 297
Query: 695 DVFHVL 712
DVF+++
Sbjct: 296 DVFYLI 279
Score = 74.8 bits (157), Expect(2) = 1e-034
Identities = 34/59 (57%), Positives = 40/59 (67%)
Frame = +2 / -1
Query: 323 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSH 499
K RRLAQNREAARKSRLRKKAYVQQLE+SR+KL G ++ S+ + SH
Sbjct: 680 KIQRRLAQNREAARKSRLRKKAYVQQLESSRMKLAQLEQELERARHQGAYLGSASNSSH 504
>gb|DN500775.1|DN500775 UL85TG07.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL85TG07 5',
mRNA sequence
Length = 883
Score = 85.8 bits (181), Expect(2) = 2e-032
Identities = 30/66 (45%), Positives = 50/66 (75%)
Frame = +2 / +2
Query: 515 GASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAKA 694
G + F+MEY W+EE +Q+SELR + AH +D +LR +++ ++HY+ +FR+K +AAKA
Sbjct: 554 GIATFEMEYGHWVEEQLKQVSELRNALQAHITDIELRILIENGLNHYNNLFRMKTDAAKA 733
Query: 695 DVFHVL 712
DVF+++
Sbjct: 734 DVFYLI 751
Score = 73.5 bits (154), Expect(2) = 2e-032
Identities = 35/65 (53%), Positives = 40/65 (61%)
Frame = +2 / +2
Query: 323 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSHS 502
K RRLAQNREAARKSR+RKKAYVQQLE+SRLKL G +I S S
Sbjct: 347 KIQRRLAQNREAARKSRVRKKAYVQQLESSRLKLAQLEQELERARHQGAYIGGSASDSSH 526
Query: 503 MSGNG 517
+ +G
Sbjct: 527 LGFSG 541
>gb|CK090845.1|CK090845 F027P79.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F027P79 3', mRNA sequence
Length = 797
Score = 117 bits (251), Expect(2) = 2e-032
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +2 / -1
Query: 515 GASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAKA 694
G AFD+EYARWLEE NRQI+ELR+ V++HA D +LR + D IM+HYDE+F+LK NAAKA
Sbjct: 662 GPMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRYITDGIMAHYDEVFKLKSNAAKA 483
Query: 695 DVFHVL 712
DVFH+L
Sbjct: 482 DVFHLL 465
Score = 41.4 bits (84), Expect(2) = 2e-032
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / -3
Query: 464 GIFISSSVDQSHSMSGNGA 520
GIFISSS DQ+HSMSGNGA
Sbjct: 714 GIFISSSGDQTHSMSGNGA 658
>gb|CV241478.1|CV241478 WS02512.B21_F06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_F06 3', mRNA sequence
Length = 771
Score = 84.5 bits (178), Expect(2) = 2e-032
Identities = 31/66 (46%), Positives = 50/66 (75%)
Frame = +2 / +1
Query: 515 GASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAKA 694
G +AF+MEY W+EE +Q+SELR + A +D +LR +V+ ++HY+ +FR+K +AAKA
Sbjct: 526 GIAAFEMEYGHWVEEQLKQVSELRNALQARITDIELRILVENGLNHYNNLFRMKTDAAKA 705
Query: 695 DVFHVL 712
DVF+++
Sbjct: 706 DVFYLI 723
Score = 74.8 bits (157), Expect(2) = 2e-032
Identities = 36/65 (55%), Positives = 40/65 (61%)
Frame = +2 / +1
Query: 323 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSHS 502
K RRLAQNREAARKSRLRKKAYVQQLE+SRLKL G +I S S
Sbjct: 319 KIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELERARHQGAYIGGSASDSSH 498
Query: 503 MSGNG 517
+ +G
Sbjct: 499 LGFSG 513
>gb|BU897134.1|BU897134 X051H09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 573
Score = 116 bits (248), Expect = 1e-025
Identities = 43/63 (68%), Positives = 56/63 (88%)
Frame = +2 / +2
Query: 524 AFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAKADVF 703
AFD+EYARWLE+ NRQI+ELR+ V++H DT+LR ++D IM+HYD++FRLK NAAKADVF
Sbjct: 2 AFDVEYARWLEDQNRQINELRSAVNSHTGDTELRIIIDGIMAHYDDVFRLKSNAAKADVF 181
Query: 704 HVL 712
H+L
Sbjct: 182 HLL 190
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 292,230,819
Number of Sequences: 369679
Number of extensions: 3689270
Number of successful extensions: 31193
Number of sequences better than 1.0e-020: 16
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8987222300
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)