TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.006E19F020311.3.1
         (789 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ771671.1|AJ771671  AJ771671 Populus euphratica root 3-6...   210   9e-054

>gb|AJ771671.1|AJ771671 AJ771671 Populus euphratica root 3-6 months Populus euphratica cDNA
           clone P0001600004A03F1, mRNA sequence
          Length = 652

 Score =  210 bits (453), Expect = 9e-054
 Identities = 88/165 (53%), Positives = 111/165 (67%)
 Frame = +2 / +3

                                                                       
Query: 293 LRVPRLVNAVSNAYLKLIKGTGVDMLLEFVKDMPKVGTXXXXXXXXXXXXXXXTWIIELL 472
           +R+PR VN VSNAYL+  +G+G  M+LEFV++MPK  T               TW++  L
Sbjct: 45  VRLPRAVNLVSNAYLQSFRGSGFRMILEFVEEMPKTSTKLKLDIASLLGTLFFTWVVIQL 224

                                                                       
Query: 473 FPVMLTYLVYEKQQKLRIMMKMHGLKDGPYWLISYSYFLALSIVYMLFFMIFGSLIGLNF 652
           FPV+ T LVYEKQQKLRIMMKMHGL DGPYW+ISY YFLA+S +YM  F+ FGS++GL F
Sbjct: 225 FPVVSTALVYEKQQKLRIMMKMHGLGDGPYWMISYMYFLAISALYMFVFVAFGSIVGLKF 404

                                                        
Query: 653 FRVNEYSIQAVFFFVCINLQIXXXXXXXXXXXXGKMATGMGYMYV 787
           F +N+Y IQ VF+F+ INLQI             K AT +GY+ V
Sbjct: 405 FTLNDYFIQFVFYFLYINLQISLAFLVSAFFSNVKTATVVGYICV 539




 Score =  118 bits (252), Expect = 5e-026
 Identities = 54/162 (33%), Positives = 93/162 (57%)
 Frame = -3 / -3

                                                                       
Query: 781 HVPHPCGHLARQKERCHKKCKCNLQIYTDEEKNSLYAIFIYSEKIETNQGAKNHKE*HID 602
           ++ + C  L  +KE   ++ + NLQ+Y ++ K+ L  + +  E+ +T   AK HK  H+ 
Sbjct: 533 YIAYNCSSLDIRKECGDQERQGNLQVYIEKIKHKLDEVVVQCEEFQTYY*AKCHKNKHV* 354

                                                                       
Query: 601 D**SKEIRIRYQPVRPILQTVHFHHNPXXXXXLIHQICQHNWEKKFDDPCEE*DTQKRRQ 422
              SK+I IR  P+RPI + +HFHH+P     LI+Q C+H+ ++ +D+PC+E   +KR  
Sbjct: 353 CRYSKKIHIRNHPIRPISKPMHFHHDP*FLLFLINQCCRHHRKQLYDNPCKEESAKKRCD 174

                                                     
Query: 421 IQLKTCPNFGHIFYKLK*HVYPSPFD*FQISVGYCIHQAWNP 296
           +QL+ C +F H F +L  H         ++ + Y I++ W P
Sbjct: 173 VQLELC*SFRHFFDEL*YHSKTRSSKRLKVGIRYQIYRTW*P 48



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 406,747,954
Number of Sequences: 369679
Number of extensions: 5728268
Number of successful extensions: 44142
Number of sequences better than 1.0e-020: 1
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 10201711800
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)