TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ2b01.yg.2.1
(541 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX182279.1|CX182279 G09_45-117_13.ab1 leaf inoculated wi... 146 1e-034
>gb|CX182279.1|CX182279 G09_45-117_13.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 685
Score = 146 bits (313), Expect = 1e-034
Identities = 57/90 (63%), Positives = 79/90 (87%)
Frame = +3 / +1
Query: 12 LXNDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVL 191
L N+VLD+AKIE+GK+ELE + FDLR++MDDV++LFS K+ EK IELAV+V D VP+ ++
Sbjct: 85 LINEVLDQAKIESGKIELEEMQFDLRAIMDDVLALFSGKAHEKGIELAVYVSDGVPEMLI 264
Query: 192 GDPWRFRQILTNLVGNAVKFTERGHVFVRV 281
GDP RFRQI+TNL+GN++KFT++GH+F+ V
Sbjct: 265 GDPGRFRQIITNLMGNSIKFTKKGHIFLTV 354
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 229,110,534
Number of Sequences: 369679
Number of extensions: 3114381
Number of successful extensions: 46600
Number of sequences better than 1.0e-020: 1
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6265505152
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)