TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ1h07.yg.2.1
(357 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 86 1e-022
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 84 3e-021
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 84 3e-021
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 84 3e-021
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 84 3e-021
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 84 3e-021
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 84 3e-021
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 84 3e-021
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 85.8 bits (181), Expect(2) = 1e-022
Identities = 34/78 (43%), Positives = 48/78 (61%)
Frame = +1 / +3
Query: 16 YHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVL 195
+HFDLSGTAFG +L AG++ I+ +R C G+ VT ++ GSNP Y A L
Sbjct: 87 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFATL 266
Query: 196 VEFEXXDGDVXQVDIXEA 249
VE+E DGD+ V++ +A
Sbjct: 267 VEYEDGDGDLKSVELKQA 320
Score = 38.6 bits (78), Expect(2) = 1e-022
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1 / +3
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLR 342
NS W+PM+ SWG W++D+ L+ S++
Sbjct: 324 NSDSWVPMQKSWGAVWKLDAGSLLRAPLSIK 416
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 84.0 bits (177), Expect(2) = 3e-021
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +1 / -1
Query: 16 YHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVL 195
+HFDLSGTAFG +L AG++ IQ +R C G+ VT ++ GSNP Y A +
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 408
Query: 196 VEFEXXDGDVXQVDIXEA 249
VE+E DG++ V++ +A
Sbjct: 407 VEYEDGDGELKSVELKQA 354
Score = 36.3 bits (73), Expect(2) = 3e-021
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / -1
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLR 342
+S W+PM+ SWG W++D+ L+ S++
Sbjct: 350 DSDSWVPMQKSWGAVWKLDAGSLLRAPLSIK 258
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 84.0 bits (177), Expect(2) = 3e-021
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +1 / -3
Query: 16 YHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVL 195
+HFDLSGTAFG +L AG++ IQ +R C G+ VT ++ GSNP Y A +
Sbjct: 639 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 460
Query: 196 VEFEXXDGDVXQVDIXEA 249
VE+E DG++ V++ +A
Sbjct: 459 VEYEDGDGELKSVELKQA 406
Score = 36.3 bits (73), Expect(2) = 3e-021
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / -3
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLR 342
+S W+PM+ SWG W++D+ L+ S++
Sbjct: 402 DSDSWVPMQKSWGAVWKLDAGSLLRAPLSIK 310
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 84.0 bits (177), Expect(2) = 3e-021
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +1 / -2
Query: 16 YHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVL 195
+HFDLSGTAFG +L AG++ IQ +R C G+ VT ++ GSNP Y A +
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 408
Query: 196 VEFEXXDGDVXQVDIXEA 249
VE+E DG++ V++ +A
Sbjct: 407 VEYEDGDGELKSVELKQA 354
Score = 36.3 bits (73), Expect(2) = 3e-021
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / -2
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLR 342
+S W+PM+ SWG W++D+ L+ S++
Sbjct: 350 DSDSWVPMQKSWGAVWKLDAGSLLRAPLSIK 258
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 84.0 bits (177), Expect(2) = 3e-021
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +1 / -1
Query: 16 YHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVL 195
+HFDLSGTAFG +L AG++ IQ +R C G+ VT ++ GSNP Y A +
Sbjct: 567 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 388
Query: 196 VEFEXXDGDVXQVDIXEA 249
VE+E DG++ V++ +A
Sbjct: 387 VEYEDGDGELKSVELKQA 334
Score = 36.3 bits (73), Expect(2) = 3e-021
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / -1
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLR 342
+S W+PM+ SWG W++D+ L+ S++
Sbjct: 330 DSDSWVPMQKSWGAVWKLDAGSLLRAPLSIK 238
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 84.0 bits (177), Expect(2) = 3e-021
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +1 / -3
Query: 16 YHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVL 195
+HFDLSGTAFG +L AG++ IQ +R C G+ VT ++ GSNP Y A +
Sbjct: 566 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 387
Query: 196 VEFEXXDGDVXQVDIXEA 249
VE+E DG++ V++ +A
Sbjct: 386 VEYEDGDGELKSVELKQA 333
Score = 36.3 bits (73), Expect(2) = 3e-021
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / -3
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLR 342
+S W+PM+ SWG W++D+ L+ S++
Sbjct: 329 DSDSWVPMQKSWGAVWKLDAGSLLRAPLSIK 237
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 84.0 bits (177), Expect(2) = 3e-021
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +1 / -1
Query: 16 YHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVL 195
+HFDLSGTAFG +L AG++ IQ +R C G+ VT ++ GSNP Y A +
Sbjct: 663 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 484
Query: 196 VEFEXXDGDVXQVDIXEA 249
VE+E DG++ V++ +A
Sbjct: 483 VEYEDGDGELKSVELKQA 430
Score = 36.3 bits (73), Expect(2) = 3e-021
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / -1
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLR 342
+S W+PM+ SWG W++D+ L+ S++
Sbjct: 426 DSDSWVPMQKSWGAVWKLDAGSLLRAPLSIK 334
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 84.0 bits (177), Expect(2) = 3e-021
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +1 / -2
Query: 16 YHFDLSGTAFGGXXQPXXXXELXXAGIIDIQFRRXXCXXXGQXVTXXIEHGSNPXYLAVL 195
+HFDLSGTAFG +L AG++ IQ +R C G+ VT ++ GSNP Y A +
Sbjct: 591 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 412
Query: 196 VEFEXXDGDVXQVDIXEA 249
VE+E DG++ V++ +A
Sbjct: 411 VEYEDGDGELKSVELKQA 358
Score = 36.3 bits (73), Expect(2) = 3e-021
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / -2
Query: 250 NSGWWMPMRXSWGXXWRMDSKRXLQXXXSLR 342
+S W+PM+ SWG W++D+ L+ S++
Sbjct: 354 DSDSWVPMQKSWGAVWKLDAGSLLRAPLSIK 262
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 100,671,592
Number of Sequences: 369679
Number of extensions: 589761
Number of successful extensions: 40599
Number of sequences better than 1.0e-020: 8
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 3428514573
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)