TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAI15h08.yg.2.1
(557 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ780693.1|AJ780693 AJ780693 Populus euphratica leaf 3-6... 71 6e-026
>gb|AJ780693.1|AJ780693 AJ780693 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900011C09F1, mRNA sequence
Length = 290
Score = 70.7 bits (148), Expect(2) = 6e-026
Identities = 29/45 (64%), Positives = 35/45 (77%)
Frame = -2 / +3
Query: 295 LGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEV 161
LGG FD+ESLVE LL+QLA Q ++VNVYD TN +P+ MYGS V
Sbjct: 3 LGGIFDIESLVEKLLQQLASKQTILVNVYDTTNQYHPISMYGSNV 137
Score = 65.2 bits (136), Expect(2) = 6e-026
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = -2 / +3
Query: 136 HICMLDFGDPFRKHHMVCRYRNKPHVPWSAISTPSGVFVICMLVG 2
H+ L+ DPFRKH M CR++ KP PW AI+T G+ VI +L+G
Sbjct: 156 HVSSLNLEDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIG 290
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 288,682,883
Number of Sequences: 369679
Number of extensions: 4418041
Number of successful extensions: 71080
Number of sequences better than 1.0e-020: 1
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6559200706
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)