TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF41c07.yg.2.1
(691 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus t... 193 1e-095
gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus t... 127 6e-090
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 96 3e-085
gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus tr... 128 3e-076
gb|CA821982.1|CA821982 R02C12 two-month-old roots from clon... 143 1e-033
gb|AI166257.1|AI166257 xylem.est.107 Poplar xylem Lambda ZA... 122 3e-027
>gb|DT497112.1|DT497112 WS01125.BR_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 5', mRNA sequence
Length = 908
Score = 193 bits (417), Expect(3) = 1e-095
Identities = 73/89 (82%), Positives = 85/89 (95%)
Frame = -1 / +2
Query: 268 LKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYIQVGK 89
LKVR HYGHPDVFDR+FH+TRGG+SKAS+VIN+SEDI+AGFNSTLR+GN+THHEYIQVGK
Sbjct: 434 LKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYIQVGK 613
Query: 88 GRDVGLNQIALFEGKVAGGNGEQVLSRDV 2
GRDVGLNQI++FE K+A GNGEQ LSRD+
Sbjct: 614 GRDVGLNQISMFEAKIANGNGEQTLSRDI 700
Score = 114 bits (243), Expect(3) = 1e-095
Identities = 47/63 (74%), Positives = 52/63 (82%)
Frame = -1 / +2
Query: 607 VHGKDQEIYCIKLPGNPKLGEGXPENQNHAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLL 428
V DQ IY IKLPG LGEG PENQNHAIIFTRG+ +Q IDMNQDNY+EEA+KMRNLL
Sbjct: 98 VQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMRNLL 277
Query: 427 EEF 419
+EF
Sbjct: 278 QEF 286
Score = 104 bits (222), Expect(3) = 3e-043
Identities = 54/88 (61%), Positives = 57/88 (64%)
Frame = +3 / -3
Query: 6 SRLRTCSPLPPATFPSNSAIWFKPTSRPFPTWIYSWCVMFPWRKVELNPAYISSLILITR 185
SRL+ CSP P A SN I +PTS PFPT IYS V FP R VEL PA ISSL LIT
Sbjct: 696 SRLKVCSPFPLAILASNIEI*LRPTSLPFPTCIYS*WVTFPSRSVELKPANISSLRLITL 517
Query: 186 DALLMPPRVM*NIRSKTSGCP*CIRTLR 269
+ALL PP V * S TSG P* RTLR
Sbjct: 516 EALLTPPLVK*KSLSNTSG*P*WNRTLR 433
Score = 84.5 bits (178), Expect(2) = 1e-023
Identities = 39/89 (43%), Positives = 59/89 (66%)
Frame = +2 / -2
Query: 2 HISAENLLTIASSNFPLK*CNLVQANITPFPHLDIFMVCDVPLAQSRIEPGIYIFAYINH 181
+I+ ++LL+I+ S F LK NL++A+I+P P+L IFM+ ++P RIE G YIF I++
Sbjct: 700 YITTQSLLSISISYFGLKHRNLIEAHISPLPNLYIFMMGNIPFT*CRIEAGKYIFTQIDN 521
Query: 182 SRRLANATSGYVKYPIKNIRMSIVHSNFE 268
R + S VK PIK IRM+IV + +
Sbjct: 520 LRSFTDTPSSQVKKPIKYIRMTIVEPHLK 434
Score = 81.7 bits (172), Expect(3) = 1e-095
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = -1 / +2
Query: 397 GIRKPTILGVREHVFTGSVSSLASFMSKQETSFVTLGQRVLA 272
G+R P+ILG+REH+FTGSVSSLA FMS QETSFVT+GQR+LA
Sbjct: 302 GVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLA 427
Score = 59.7 bits (124), Expect(3) = 3e-043
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +3 / -3
Query: 288 PKVTKLVSCFDINDASEETLPVNTCSLTPRIVGFRMP 398
P VTKLVS FDIN A +ETLPVN CSL+P I GF P
Sbjct: 411 PIVTKLVS*FDINHARDETLPVNICSLSPSIEGFLTP 301
Score = 49.2 bits (101), Expect(3) = 3e-043
Identities = 26/59 (44%), Positives = 33/59 (55%)
Frame = +2 / -2
Query: 419 KFFK*ISHFHCFLQVVILIHIDRLNCISSSEDYGMVLVLRXAFTXLGVPRQFNAVYFLV 595
KF + I HF F VVIL+HI L S+ ED MVLV +FT G +F ++ LV
Sbjct: 286 KFLQQIPHFQGFFHVVILVHIYCLQAFSTCEDNSMVLVFWFSFTQDGWSWKFYSINDLV 110
Score = 47.3 bits (97), Expect(2) = 1e-023
Identities = 25/34 (73%), Positives = 26/34 (76%)
Frame = +3 / -3
Query: 420 NSSSKFLIFIASSK*LS*FISIV*TASPRVKIMA 521
NS SKFLIF ASS *LS FISI SPRVKI+A
Sbjct: 285 NSCSKFLIFKASSM*LSWFISIACKPSPRVKIIA 184
>gb|DT495294.1|DT495294 WS01120.BR_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 5', mRNA sequence
Length = 872
Score = 127 bits (272), Expect(4) = 6e-090
Identities = 48/65 (73%), Positives = 57/65 (87%)
Frame = -1 / +2
Query: 268 LKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYIQVGK 89
LKVR HYGHPDVFDR+FH+TRGG+SKAS+VIN+SEDI+AGFNSTLR+GN+THHE V +
Sbjct: 431 LKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHENXPVWE 610
Query: 88 GRDVG 74
G G
Sbjct: 611 GERCG 625
Score = 114 bits (243), Expect(4) = 6e-090
Identities = 47/63 (74%), Positives = 52/63 (82%)
Frame = -1 / +2
Query: 607 VHGKDQEIYCIKLPGNPKLGEGXPENQNHAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLL 428
V DQ IY IKLPG LGEG PENQNHAIIFTRG+ +Q IDMNQDNY+EEA+KMRNLL
Sbjct: 95 VQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMRNLL 274
Query: 427 EEF 419
+EF
Sbjct: 275 QEF 283
Score = 81.7 bits (172), Expect(4) = 6e-090
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = -1 / +2
Query: 397 GIRKPTILGVREHVFTGSVSSLASFMSKQETSFVTLGQRVLA 272
G+R P+ILG+REH+FTGSVSSLA FMS QETSFVT+GQR+LA
Sbjct: 299 GVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLA 424
Score = 65.7 bits (137), Expect(4) = 6e-090
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = -1 / +3
Query: 100 QVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDV 2
Q GKGRDVGLNQI++FE K+A GNGEQ LSRD+
Sbjct: 600 QFGKGRDVGLNQISMFEAKIANGNGEQTLSRDI 698
Score = 60.2 bits (125), Expect(4) = 1e-038
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = +2 / -2
Query: 86 PFPHLDIFMVCDVPLAQSRIEPGIYIFAYINHSRRLANATSGYVKYPIKNIRMSIVHSNF 265
PFP+ IFM+ ++P RIE G YIF I++ R + S VK PIK IRM+IV +
Sbjct: 613 PFPNWXIFMMGNIPFT*CRIEAGKYIFTQIDNLRSFTDTPSSQVKKPIKYIRMTIVEPHL 434
Query: 266 E 268
+
Sbjct: 433 K 431
Score = 59.7 bits (124), Expect(4) = 1e-038
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +3 / -3
Query: 288 PKVTKLVSCFDINDASEETLPVNTCSLTPRIVGFRMP 398
P VTKLVS FDIN A +ETLPVN CSL+P I GF P
Sbjct: 408 PIVTKLVS*FDINHARDETLPVNICSLSPSIEGFLTP 298
Score = 49.2 bits (101), Expect(4) = 1e-038
Identities = 26/59 (44%), Positives = 33/59 (55%)
Frame = +2 / -2
Query: 419 KFFK*ISHFHCFLQVVILIHIDRLNCISSSEDYGMVLVLRXAFTXLGVPRQFNAVYFLV 595
KF + I HF F VVIL+HI L S+ ED MVLV +FT G +F ++ LV
Sbjct: 283 KFLQQIPHFQGFFHVVILVHIYCLQAFSTCEDNSMVLVFWFSFTQDGWSWKFYSINDLV 107
Score = 46.4 bits (95), Expect(4) = 1e-038
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +3 / -2
Query: 6 SRLRTCSPLPPATFPSNSAIWFKPTSRPFPTW 101
SRL+ CSP P A SN I +PTS PFP W
Sbjct: 694 SRLKVCSPFPLAILASNIEI*LRPTSLPFPNW 599
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 95.9 bits (203), Expect(8) = 3e-085
Identities = 37/44 (84%), Positives = 41/44 (93%)
Frame = -1 / +3
Query: 265 KVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTL 134
+VRMHYGHPDVFDR+FHITRGGISKASRVINISEDIY+G + L
Sbjct: 25269 RVRMHYGHPDVFDRVFHITRGGISKASRVINISEDIYSGMTALL 25400
Score = 91.8 bits (194), Expect(8) = 3e-085
Identities = 35/41 (85%), Positives = 39/41 (95%)
Frame = -1 / +1
Query: 592 QEIYCIKLPGNPKLGEGXPENQNHAIIFTRGDAVQTIDMNQ 470
+EIY +KLPGNPKLGEG PENQNHAIIFTRG+A+QTIDMNQ
Sbjct: 22471 KEIYSVKLPGNPKLGEGKPENQNHAIIFTRGNAIQTIDMNQ 22593
Score = 74.8 bits (157), Expect(7) = 1e-051
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = +3 / -2
Query: 150 PAYISSLILITRDALLMPPRVM*NIRSKTSGCP*CIRTLR 269
P YISSL+LITR+ALL+PPRVM SKTSGCP*CIRTLR
Sbjct: 25384 PEYISSLMLITREALLIPPRVMWKTLSKTSGCP*CIRTLR 25265
Score = 74.8 bits (157), Expect(8) = 3e-085
Identities = 30/34 (88%), Positives = 34/34 (100%)
Frame = -1 / +1
Query: 103 IQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDV 2
++VGKGRDVGLNQIA+FEGKV+GGNGEQVLSRDV
Sbjct: 26011 LKVGKGRDVGLNQIAVFEGKVSGGNGEQVLSRDV 26112
Score = 64.3 bits (134), Expect(7) = 1e-051
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +3 / -1
Query: 3 TSRLRTCSPLPPATFPSNSAIWFKPTSRPFPTW 101
TS LRTCSPLPP TFPSN+AI +PTSRP PT+
Sbjct: 26111 TSLLRTCSPLPPETFPSNTAI*LRPTSRPLPTF 26013
Score = 57.0 bits (118), Expect(7) = 1e-051
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +2 / -3
Query: 470 LIHIDRLNCISSSEDYGMVLVLRXAFTXLGVPRQFNAVYFL 592
LIHI+ LNCIS+S+ MVL+LR +F+ +PRQ N VYFL
Sbjct: 22593 LIHINCLNCISTSKYNCMVLILRFSFSKFWIPRQLNRVYFL 22471
Score = 52.8 bits (109), Expect(8) = 3e-085
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -1 / +3
Query: 346 SVSSLASFMSKQETSFVTLGQRVLA 272
SVSSLASFMS QETSFVTLGQRVLA
Sbjct: 25098 SVSSLASFMSNQETSFVTLGQRVLA 25172
Score = 52.4 bits (108), Expect(8) = 3e-085
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = -1 / +2
Query: 157 YAGFNSTLRQGNITHHEYIQV 95
+AGFNSTLRQGN+THHEYIQV
Sbjct: 25886 HAGFNSTLRQGNVTHHEYIQV 25948
Score = 48.7 bits (100), Expect(8) = 3e-085
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -1 / +3
Query: 469 DNYLEEAMKMRNLLEEFHNAHG 404
DNY EEA+KMRNLLEEFH HG
Sbjct: 24900 DNYFEEALKMRNLLEEFHQDHG 24965
Score = 46.9 bits (96), Expect(8) = 3e-085
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -1 / +3
Query: 409 HGKHGIRKPTILGVREHVFTG 347
H HGIR PTILGVREHVFTG
Sbjct: 24951 HQDHGIRPPTILGVREHVFTG 25013
Score = 46.4 bits (95), Expect(7) = 1e-051
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3 / -2
Query: 273 ARTRCPKVTKLVSCFDINDASEETL 347
ARTR P+VTKLVS FDIN+A EETL
Sbjct: 25171 ARTRWPRVTKLVS*FDINEAKEETL 25097
Score = 40.9 bits (83), Expect(7) = 1e-051
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +3 / -2
Query: 336 EETLPVNTCSLTPRIVGFRMP 398
E LPVNTCSLTPR+VG R+P
Sbjct: 25024 ETYLPVNTCSLTPRMVGGRIP 24962
Score = 37.7 bits (76), Expect(7) = 1e-051
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / -3
Query: 96 TWIYSWCVMFPWRKVELNPAY 158
T IYS V FPWR+VELNPA+
Sbjct: 25947 T*IYS*WVTFPWRRVELNPAW 25885
Score = 32.7 bits (65), Expect(7) = 1e-051
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3 / -2
Query: 405 P*AL*NSSSKFLIFIASSK*LS* 473
P*+ NSSS+FLIF ASSK*LS*
Sbjct: 24964 P*S*WNSSSRFLIFKASSK*LS* 24896
Score = 28.1 bits (55), Expect(8) = 3e-085
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1 / +2
Query: 637 EYXSKLVXXDVHGKDQ 590
EY SKLV D++GKD+
Sbjct: 21923 EYYSKLVKADINGKDK 21970
>gb|DT493588.1|DT493588 WS0111.BR_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N04
5', mRNA sequence
Length = 599
Score = 128 bits (275), Expect(3) = 3e-076
Identities = 47/56 (83%), Positives = 55/56 (98%)
Frame = -1 / +2
Query: 268 LKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYI 101
LKVR HYGHPDVFDR+FH+TRGG+SKAS+VIN+SEDI+AGFNSTLR+GN+THHEYI
Sbjct: 431 LKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNSTLREGNVTHHEYI 598
Score = 114 bits (243), Expect(3) = 3e-076
Identities = 47/63 (74%), Positives = 52/63 (82%)
Frame = -1 / +2
Query: 607 VHGKDQEIYCIKLPGNPKLGEGXPENQNHAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLL 428
V DQ IY IKLPG LGEG PENQNHAIIFTRG+ +Q IDMNQDNY+EEA+KMRNLL
Sbjct: 95 VQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQAIDMNQDNYMEEALKMRNLL 274
Query: 427 EEF 419
+EF
Sbjct: 275 QEF 283
Score = 81.7 bits (172), Expect(3) = 3e-076
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = -1 / +2
Query: 397 GIRKPTILGVREHVFTGSVSSLASFMSKQETSFVTLGQRVLA 272
G+R P+ILG+REH+FTGSVSSLA FMS QETSFVT+GQR+LA
Sbjct: 299 GVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLA 424
Score = 64.8 bits (135), Expect(3) = 2e-031
Identities = 36/56 (64%), Positives = 37/56 (66%)
Frame = +3 / -3
Query: 102 IYSWCVMFPWRKVELNPAYISSLILITRDALLMPPRVM*NIRSKTSGCP*CIRTLR 269
IYS V FP R VEL PA ISSL LIT +ALL PP V * S TSG P* RTLR
Sbjct: 597 IYS*WVTFPSRSVELKPANISSLRLITLEALLTPPLVK*KSLSNTSG*P*WNRTLR 430
Score = 59.7 bits (124), Expect(3) = 2e-031
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +3 / -3
Query: 288 PKVTKLVSCFDINDASEETLPVNTCSLTPRIVGFRMP 398
P VTKLVS FDIN A +ETLPVN CSL+P I GF P
Sbjct: 408 PIVTKLVS*FDINHARDETLPVNICSLSPSIEGFLTP 298
Score = 49.2 bits (101), Expect(3) = 2e-031
Identities = 26/59 (44%), Positives = 33/59 (55%)
Frame = +2 / -2
Query: 419 KFFK*ISHFHCFLQVVILIHIDRLNCISSSEDYGMVLVLRXAFTXLGVPRQFNAVYFLV 595
KF + I HF F VVIL+HI L S+ ED MVLV +FT G +F ++ LV
Sbjct: 283 KFLQQIPHFQGFFHVVILVHIYCLQAFSTCEDNSMVLVFWFSFTQDGWSWKFYSINDLV 107
>gb|CA821982.1|CA821982 R02C12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 291
Score = 143 bits (307), Expect = 1e-033
Identities = 61/74 (82%), Positives = 65/74 (87%)
Frame = -1 / +2
Query: 223 IFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGK 44
++ GISKASRVINISEDI+AGFN+TLRQG HEYIQVGKGRDVGLNQIALFEGK
Sbjct: 11 LYFYNSSGISKASRVINISEDIFAGFNTTLRQGKYYSHEYIQVGKGRDVGLNQIALFEGK 190
Query: 43 VAGGNGEQVLSRDV 2
VAGGNGEQVLSRDV
Sbjct: 191 VAGGNGEQVLSRDV 232
Score = 119 bits (255), Expect = 2e-026
Identities = 52/67 (77%), Positives = 52/67 (77%)
Frame = +3 / -1
Query: 3 TSRLRTCSPLPPATFPSNSAIWFKPTSRPFPTWIYSWCVMFPWRKVELNPAYISSLILIT 182
TS LRTCSP PPATFPS AIWF PTS PFPT IYSW FP V LNPA ISSLILIT
Sbjct: 231 TSLLRTCSPFPPATFPSKRAIWFNPTSLPFPT*IYSWE*YFPCLNVVLNPANISSLILIT 52
Query: 183 RDALLMP 203
RDALLMP
Sbjct: 51 RDALLMP 31
>gb|AI166257.1|AI166257 xylem.est.107 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 583
Score = 122 bits (260), Expect = 3e-027
Identities = 46/57 (80%), Positives = 54/57 (94%)
Frame = -1 / +2
Query: 172 ISEDIYAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDV 2
+SEDI+AGFNSTLR+GN+THHEYIQVGKGRDVGLNQI++FE K+A GNGEQ LSRD+
Sbjct: 2 LSEDIFAGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDI 172
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 308,088,667
Number of Sequences: 369679
Number of extensions: 4211108
Number of successful extensions: 39418
Number of sequences better than 1.0e-020: 7
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8598585660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)