TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF12e06.yg.2.1
(561 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal libra... 103 1e-039
gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA librar... 89 3e-037
gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Popu... 79 2e-034
gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Popul... 63 8e-031
gb|CN549595.1|CN549595 GQ0241.B3_D18 GQ024 Populus trichoca... 112 3e-030
gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDN... 79 1e-029
gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium... 79 7e-028
gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Librar... 67 2e-027
gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Librar... 67 2e-027
gb|BI127989.1|BI127989 G069P39Y Populus cambium cDNA librar... 79 2e-026
gb|BU837261.1|BU837261 T096G03 Populus apical shoot cDNA li... 73 9e-026
gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus... 75 2e-025
gb|BU812059.1|BU812059 UL91TG07 Populus leaf cDNA library P... 79 2e-025
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 84 2e-022
>gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 103 bits (220), Expect(2) = 1e-039
Identities = 40/119 (33%), Positives = 62/119 (52%)
Frame = +3 / +3
Query: 192 IADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLA 371
+ N + C W G+N+ +L+ WR T I++ + V++ K L +L LP GL+A
Sbjct: 237 LISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEENLKSDLSLWQLGTLPPGLIA 416
Query: 372 FQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
F V+ ++ W GLG+ S D E A +H+NG KPWLD+ + W KY+
Sbjct: 417 FHGHVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGRAKPWLDIAFPQLRPLWAKYI 593
Score = 79.4 bits (167), Expect(2) = 1e-039
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +3 / +3
Query: 33 LPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
LP+L PSLN+VV LDDD++VQ DLSPLW++DM GKV GAV+ C
Sbjct: 45 LPELFPSLNKVVFLDDDVVVQSDLSPLWDIDMNGKVNGAVETC 173
>gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 758
Score = 89.0 bits (188), Expect(3) = 3e-037
Identities = 33/70 (47%), Positives = 47/70 (67%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L +LP GL+ F +L YPL+ SW GLG+D ++ +IE AA +HYNG KP LDL +
Sbjct: 463 KLGSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPXLDLAVA 642
Query: 519 DYKNYWRKYL 548
YK YW +++
Sbjct: 643 KYKPYWSRFV 672
Score = 71.2 bits (149), Expect(3) = 3e-037
Identities = 26/64 (40%), Positives = 42/64 (65%)
Frame = +3 / +1
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQL 182
+S+ F LP++ P L +++ LDDD++VQKDL+PLW++D+ G V GAV+ C +
Sbjct: 115 LSMLNHLRFYLPEVYPKLGKILFLDDDIVVQKDLTPLWSIDLQGMVNGAVETCKESFHRF 294
Query: 183 KPYI 194
Y+
Sbjct: 295 DKYL 306
Score = 32.7 bits (65), Expect(3) = 3e-037
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +3 / +1
Query: 201 HNVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
+N D ++C W +N+ +L +W+ + IT ++
Sbjct: 331 NNFDPNACGWAFDMNMFDLKQWKISNITGIY 423
>gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_O22 3', mRNA sequence
Length = 918
Score = 79.4 bits (167), Expect(3) = 2e-034
Identities = 30/70 (42%), Positives = 44/70 (62%)
Frame = +3 / -3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F PL+ SW GLG++ IS +I+ AA +H+NG MKPWLD+ +
Sbjct: 532 KLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMT 353
Query: 519 DYKNYWRKYL 548
+K W K++
Sbjct: 352 QFKPLWTKHV 323
Score = 74.4 bits (156), Expect(3) = 2e-034
Identities = 28/53 (52%), Positives = 39/53 (73%)
Frame = +3 / -3
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+SI F LP++ P L+R++ LDDD++VQKDL+ LW +DM GKV GAV+ C
Sbjct: 880 LSILNHLRFYLPEMYPKLHRILFLDDDIVVQKDLTGLWKIDMDGKVNGAVETC 722
Score = 29.5 bits (58), Expect(3) = 2e-034
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3 / -3
Query: 219 SCVWLSGLNVIELDKWR 269
+C W G+N +LD WR
Sbjct: 646 ACAWAYGMNFFDLDAWR 596
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_K12 3', mRNA sequence
Length = 937
Score = 63.4 bits (132), Expect(4) = 8e-031
Identities = 24/53 (45%), Positives = 38/53 (71%)
Frame = +3 / -2
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F +P++ P+L +VV LDDD++VQKDLS L+++D+ V GAV+ C
Sbjct: 783 LSMLNHLRFYIPEVFPALEKVVFLDDDVVVQKDLSGLFSIDLNSNVNGAVETC 625
Score = 52.4 bits (108), Expect(4) = 8e-031
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +3 / -2
Query: 453 IEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
IEK A LH+NG KPWL +G+ YK+ W KY+
Sbjct: 324 IEKGAVLHFNGNSKPWLKIGMEKYKSLWEKYV 229
Score = 36.8 bits (74), Expect(4) = 8e-031
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3 / -2
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITSLH 293
D D+C W G+NV +L +WR +T ++
Sbjct: 558 DPDACGWAFGMNVFDLVEWRKRNVTEIY 475
Score = 35.9 bits (72), Expect(4) = 8e-031
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / -2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGH 428
+L LP GLL F L PL+ SW GLG+
Sbjct: 435 KLGTLPPGLLTFYGLTEPLDPSWHVLGLGY 346
>gb|CN549595.1|CN549595 GQ0241.B3_D18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_D18 5', mRNA sequence
Length = 689
Score = 112 bits (239), Expect(2) = 3e-030
Identities = 41/115 (35%), Positives = 67/115 (58%)
Frame = +3 / +1
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLAFQDL 383
N+D D C W G+N+ +L WR+T I + +++ K +L +L LP L+AF+
Sbjct: 139 NLDPDECAWAYGMNIFDLHAWRNTNIRETYHSWMKENLKSNLTMWKLGTLPPSLIAFKGH 318
Query: 384 VYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
V+P++ W GLG+ + ++KAA +HYNG KPWL++G + +W KY+
Sbjct: 319 VHPIDPFWHMLGLGYQNNTNIESVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYV 483
Score = 39.1 bits (79), Expect(2) = 3e-030
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3 / +1
Query: 99 DLSPLWNLDMGGKVIGAVQFC 161
DLSPLW +D+ GKV GAV+ C
Sbjct: 1 DLSPLWEIDLQGKVNGAVETC 63
>gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G069P39 5', mRNA sequence
Length = 568
Score = 79.4 bits (167), Expect(2) = 1e-029
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +3 / +3
Query: 33 LPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
LP+L PSLN+VV LDDD++VQ DLSPLW++DM GKV GAV+ C
Sbjct: 93 LPELFPSLNKVVFLDDDIVVQSDLSPLWDIDMDGKVNGAVETC 221
Score = 70.3 bits (147), Expect(2) = 1e-029
Identities = 29/94 (30%), Positives = 47/94 (50%)
Frame = +3 / +3
Query: 192 IADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLA 371
+ N + C W G+N+ +L+ WR T I++ + V++ K L +L LP GL+A
Sbjct: 285 LISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEENLKSDLSLWQLGTLPPGLIA 464
Query: 372 FQDLVYPLEDSWVESGLGHDYGISHVDIEKAATL 473
F V+ ++ W GLG+ S D E A +
Sbjct: 465 FHGHVHVIDPFWHMLGLGYQENTSLADAETAGVI 566
>gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 3', mRNA sequence
Length = 740
Score = 79.4 bits (167), Expect(3) = 7e-028
Identities = 30/70 (42%), Positives = 44/70 (62%)
Frame = +3 / -2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F PL+ SW GLG++ IS +I+ AA +H+NG MKPWLD+ +
Sbjct: 463 KLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMT 284
Query: 519 DYKNYWRKYL 548
+K W K++
Sbjct: 283 QFKPLWTKHV 254
Score = 52.4 bits (108), Expect(3) = 7e-028
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +3 / -2
Query: 75 DDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
DDD++VQKDL+ LW +DM GKV GAV+ C
Sbjct: 739 DDDIVVQKDLTGLWKIDMDGKVNGAVETC 653
Score = 29.5 bits (58), Expect(3) = 7e-028
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3 / -2
Query: 219 SCVWLSGLNVIELDKWR 269
+C W G+N +LD WR
Sbjct: 577 ACAWAYGMNFFDLDAWR 527
>gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 67.0 bits (140), Expect(3) = 2e-027
Identities = 29/59 (49%), Positives = 35/59 (59%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGI 515
+L LP LLAF L PL+ W GLG+D I I+ AA +H+NG MKPWL L I
Sbjct: 346 KLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIDSAAVIHFNGNMKPWLKLAI 522
Score = 61.1 bits (127), Expect(3) = 2e-027
Identities = 23/52 (44%), Positives = 37/52 (71%)
Frame = +3 / +1
Query: 6 SIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
S+ F +P++ P L ++V LDDD++VQKDL+ L++LD+ G V GA++ C
Sbjct: 1 SLLNHLRFYIPEIYPLLEKIVFLDDDVVVQKDLTRLFSLDLHGNVNGAMETC 156
Score = 31.8 bits (63), Expect(3) = 2e-027
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3 / +1
Query: 192 IADHNVDDDSCVWLSGLNVIELDKWRDTGITS 287
I D +C W G+N+ +L WR +T+
Sbjct: 205 IISSKFDPQACGWAFGMNIFDLIAWRKENVTA 300
>gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 67.0 bits (140), Expect(3) = 2e-027
Identities = 29/59 (49%), Positives = 35/59 (59%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGI 515
+L LP LLAF L PL+ W GLG+D I I+ AA +H+NG MKPWL L I
Sbjct: 346 KLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIDSAAVIHFNGNMKPWLKLAI 522
Score = 61.1 bits (127), Expect(3) = 2e-027
Identities = 23/52 (44%), Positives = 37/52 (71%)
Frame = +3 / +1
Query: 6 SIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
S+ F +P++ P L ++V LDDD++VQKDL+ L++LD+ G V GA++ C
Sbjct: 1 SLLNHLRFYIPEIYPLLEKIVFLDDDVVVQKDLTRLFSLDLHGNVNGAMETC 156
Score = 31.8 bits (63), Expect(3) = 2e-027
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3 / +1
Query: 192 IADHNVDDDSCVWLSGLNVIELDKWRDTGITS 287
I D +C W G+N+ +L WR +T+
Sbjct: 205 IISSKFDPQACGWAFGMNIFDLIAWRKENVTA 300
>gb|BI127989.1|BI127989 G069P39Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 505
Score = 79.4 bits (167), Expect(2) = 2e-026
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +3 / +3
Query: 33 LPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
LP+L PSLN+VV LDDD++VQ DLSPLW++DM GKV GAV+ C
Sbjct: 93 LPELFPSLNKVVFLDDDIVVQSDLSPLWDIDMDGKVNGAVETC 221
Score = 59.3 bits (123), Expect(2) = 2e-026
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +3 / +3
Query: 192 IADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLA 371
+ N + C W G+N+ +L+ WR T I++ + V++ K L +L LP GL+A
Sbjct: 285 LISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEENLKSDLSLWQLGTLPPGLIA 464
Query: 372 FQDLVYPLEDSW 407
F V+ ++ W
Sbjct: 465 FHGHVHVIDPFW 500
>gb|BU837261.1|BU837261 T096G03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 632
Score = 72.5 bits (152), Expect(2) = 9e-026
Identities = 25/43 (58%), Positives = 37/43 (86%)
Frame = +3 / +2
Query: 33 LPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+P+L P+L++VV LDDD+++Q+DLSPLW +D+ GKV GAV+ C
Sbjct: 221 IPELFPNLDKVVFLDDDVVIQRDLSPLWEIDLKGKVNGAVETC 349
Score = 63.8 bits (133), Expect(2) = 9e-026
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +3 / +2
Query: 192 IADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLA 371
+ + N+D D C W G+N+ +L WR T I + +++ K +L +L LP L+A
Sbjct: 413 LIEKNLDPDECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIA 592
Query: 372 FQDLVYPLEDSW 407
F+ V+P++ W
Sbjct: 593 FKGHVHPIDPYW 628
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_I09 3', mRNA sequence
Length = 904
Score = 74.8 bits (157), Expect(3) = 2e-025
Identities = 32/70 (45%), Positives = 40/70 (57%)
Frame = +3 / -1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP LLAF L L+ W GLG+D I I+ AA +H+NG MKPWL L I
Sbjct: 625 KLGTLPPALLAFYGLTETLDRRWHVLGLGYDMNIDDRLIDSAAVIHFNGNMKPWLKLAIG 446
Query: 519 DYKNYWRKYL 548
YK W +Y+
Sbjct: 445 RYKPLWERYI 416
Score = 46.4 bits (95), Expect(3) = 2e-025
Identities = 18/30 (60%), Positives = 25/30 (83%)
Frame = +3 / -1
Query: 72 LDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
LDDD++VQKDL+ L++LD+ G V GAV+ C
Sbjct: 904 LDDDVVVQKDLTRLFSLDLHGNVNGAVETC 815
Score = 31.8 bits (63), Expect(3) = 2e-025
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3 / -1
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITS 287
D +C W G+NV +L WR +T+
Sbjct: 748 DPQACGWAFGMNVFDLIAWRKENVTA 671
>gb|BU812059.1|BU812059 UL91TG07 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 611
Score = 79.4 bits (167), Expect(2) = 2e-025
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +3 / +2
Query: 33 LPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
LP+L PSLN+VV LDDD++VQ DLSPLW++DM GKV GAV+ C
Sbjct: 209 LPELFPSLNKVVFLDDDIVVQSDLSPLWDIDMDGKVNGAVETC 337
Score = 55.6 bits (115), Expect(2) = 2e-025
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +3 / +2
Query: 192 IADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLA 371
+ N + C W G+N+ +L+ WR T I++ + V++ K L +L LP GL+A
Sbjct: 401 LISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEENLKSDLSLWQLGTLPPGLIA 580
Query: 372 FQDLVYPLE 398
F V+ ++
Sbjct: 581 FHGHVHVID 607
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 84.0 bits (177), Expect(3) = 2e-022
Identities = 33/70 (47%), Positives = 43/70 (61%)
Frame = +3 / -3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L+ SW GLG++ IS +I AA +HYNG MKPWLD+ +
Sbjct: 461 KLGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAVIHYNGNMKPWLDIAMN 282
Query: 519 DYKNYWRKYL 548
YKN W KY+
Sbjct: 281 QYKNLWTKYV 252
Score = 31.3 bits (62), Expect(3) = 2e-022
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3 / -3
Query: 219 SCVWLSGLNVIELDKWR 269
+C W G+N+ +LD WR
Sbjct: 575 ACAWAFGMNIFDLDAWR 525
Score = 27.6 bits (54), Expect(3) = 2e-022
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3 / -3
Query: 114 WNLDMGGKVIGAVQFC 161
W +D+ GKV GAV+ C
Sbjct: 698 WKVDLDGKVNGAVETC 651
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 292,510,880
Number of Sequences: 369679
Number of extensions: 4175380
Number of successful extensions: 55636
Number of sequences better than 1.0e-020: 17
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6608149965
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)