TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF11h01.xg.2.1
(328 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus tr... 101 5e-038
gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Popul... 101 5e-038
gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Popu... 101 7e-038
gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Popu... 101 7e-038
gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium... 101 7e-038
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 105 1e-037
gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Popul... 92 3e-035
gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Po... 98 8e-034
gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA libr... 90 7e-033
gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Popul... 79 2e-031
gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Popu... 79 2e-031
gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid lib... 74 4e-031
gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Po... 89 4e-029
gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Librar... 89 5e-029
gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Librar... 89 5e-029
gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Popul... 94 1e-028
gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA librar... 83 5e-028
gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Po... 74 4e-026
gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid lib... 104 2e-022
gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDN... 81 8e-022
gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal libra... 81 9e-022
gb|CX659010.1|CX659010 PO01025C10 Poplar SC cDNA library Po... 101 2e-021
gb|CX659267.1|CX659267 PO01028E05 Poplar SC cDNA library Po... 101 2e-021
gb|CK106989.1|CK106989 UB42BPD03.5pR Populus active cambium... 100 2e-021
gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Po... 72 5e-021
>gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_M19
3', mRNA sequence
Length = 733
Score = 101 bits (215), Expect(2) = 5e-038
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -3 / -2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 696 RYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 523
Score = 74.4 bits (156), Expect(2) = 5e-038
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 510 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 391
>gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 5', mRNA sequence
Length = 735
Score = 101 bits (215), Expect(2) = 5e-038
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 43 RYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 216
Score = 74.4 bits (156), Expect(2) = 5e-038
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 229 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 348
>gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_O22 3', mRNA sequence
Length = 918
Score = 101 bits (215), Expect(2) = 7e-038
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -3 / -3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 706 RYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 533
Score = 74.4 bits (156), Expect(2) = 7e-038
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 520 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 401
>gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 3', mRNA sequence
Length = 748
Score = 101 bits (215), Expect(2) = 7e-038
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -3 / -1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 706 RYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 533
Score = 74.4 bits (156), Expect(2) = 7e-038
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 520 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 401
>gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 3', mRNA sequence
Length = 740
Score = 101 bits (215), Expect(2) = 7e-038
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -3 / -2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 637 RYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 464
Score = 74.4 bits (156), Expect(2) = 7e-038
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 451 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 332
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 105 bits (225), Expect(2) = 1e-037
Identities = 33/58 (56%), Positives = 47/58 (81%)
Frame = -3 / -3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +YLNF+ P++++RFNP ACAWA+G+N+FDL+ WRR+ CTE +H + +NED LW
Sbjct: 635 RYAQYLNFSHPLIKERFNPKACAWAFGMNIFDLDAWRREKCTEHYHYWQSLNEDRTLW 462
Score = 68.4 bits (143), Expect(2) = 1e-037
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = -3 / -3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TK LDKSWHV+GLGYNPSIS + I +AAV
Sbjct: 449 LPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAV 330
>gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_N16 3', mRNA sequence
Length = 691
Score = 91.8 bits (194), Expect(2) = 3e-035
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = -3 / -3
Query: 293 NFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
NF+ P+++++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 689 NFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 534
Score = 74.4 bits (156), Expect(2) = 3e-035
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 521 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 402
>gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02051A03 5', mRNA sequence
Length = 297
Score = 97.7 bits (207), Expect(2) = 8e-034
Identities = 30/55 (54%), Positives = 44/55 (80%)
Frame = -3 / +2
Query: 302 KYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
+YLNF+ P++++ FNP ACAWA+G+N+FDL+ WRR+ CTE +H + +NED LW
Sbjct: 2 QYLNFSHPLIKEGFNPKACAWAFGMNIFDLDAWRREKCTEHYHYWQSLNEDRTLW 166
Score = 62.5 bits (130), Expect(2) = 8e-034
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -3 / +2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAA 6
L GL++FY K LDKSWHV+GLGYNPSI+ + I +AA
Sbjct: 179 LPPGLITFYSTKKSLDKSWHVLGLGYNPSITMDEISNAA 295
>gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F056P93 3', mRNA sequence
Length = 724
Score = 90.0 bits (190), Expect(2) = 7e-033
Identities = 27/51 (52%), Positives = 40/51 (78%)
Frame = -3 / -3
Query: 290 FTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
F+ P++++RF P ACAWA+G+N+FDL+ WRR+ CTE +H + +NED LW
Sbjct: 689 FSHPLIKERFTPKACAWAFGMNIFDLDAWRREKCTEHYHYWQSLNEDRTLW 537
Score = 68.4 bits (143), Expect(2) = 7e-033
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = -3 / -3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TK LDKSWHV+GLGYNPSIS + I +AAV
Sbjct: 524 LPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAV 405
>gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 5', mRNA sequence
Length = 665
Score = 79.4 bits (167), Expect(2) = 2e-031
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = -3 / +2
Query: 269 DRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 2 EKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 133
Score = 74.4 bits (156), Expect(2) = 2e-031
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / +2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 146 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 265
>gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 3', mRNA sequence
Length = 665
Score = 79.4 bits (167), Expect(2) = 2e-031
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = -3 / -2
Query: 269 DRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 664 EKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 533
Score = 74.4 bits (156), Expect(2) = 2e-031
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 520 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 401
>gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A076P21 3', mRNA sequence
Length = 708
Score = 74.4 bits (156), Expect(3) = 4e-031
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 536 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 417
Score = 57.9 bits (120), Expect(3) = 4e-031
Identities = 17/29 (58%), Positives = 26/29 (89%)
Frame = -3 / -3
Query: 296 LNFTQPIVRDRFNPNACAWAYGVNVFDLE 210
+NF+ P+++++FNP ACAWAYG+N FDL+
Sbjct: 706 MNFSPPLIKEKFNPKACAWAYGMNFFDLD 620
Score = 37.3 bits (75), Expect(3) = 4e-031
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3 / -2
Query: 206 WRRDGCTELFHQYMEMNEDGELW 138
WRR+ CTE +H + +NE+ LW
Sbjct: 617 WRREKCTEEYHYWQNLNENRTLW 549
>gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00063, mRNA sequence
Length = 473
Score = 88.6 bits (187), Expect(2) = 4e-029
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -3 / +2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY KY+NF+ PI+ +F+P AC WA+G+N+FDL WR++ T +H + E N D LW
Sbjct: 164 RYYKYINFSNPIISSKFDPQACGWAFGMNIFDLIAWRKENVTAQYHYWQEQNADQTLW 337
Score = 56.5 bits (117), Expect(2) = 4e-029
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = -3 / +2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L L++FYG T+PLD+ WHV+GLGY+ +I I SAAV
Sbjct: 350 LPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIDSAAV 469
>gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 88.6 bits (187), Expect(2) = 5e-029
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY KY+NF+ PI+ +F+P AC WA+G+N+FDL WR++ T +H + E N D LW
Sbjct: 172 RYYKYINFSNPIISSKFDPQACGWAFGMNIFDLIAWRKENVTAQYHYWQEQNADQTLW 345
Score = 56.5 bits (117), Expect(2) = 5e-029
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L L++FYG T+PLD+ WHV+GLGY+ +I I SAAV
Sbjct: 358 LPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIDSAAV 477
>gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 88.6 bits (187), Expect(2) = 5e-029
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY KY+NF+ PI+ +F+P AC WA+G+N+FDL WR++ T +H + E N D LW
Sbjct: 172 RYYKYINFSNPIISSKFDPQACGWAFGMNIFDLIAWRKENVTAQYHYWQEQNADQTLW 345
Score = 56.5 bits (117), Expect(2) = 5e-029
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L L++FYG T+PLD+ WHV+GLGY+ +I I SAAV
Sbjct: 358 LPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIDSAAV 477
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_K12 3', mRNA sequence
Length = 937
Score = 93.6 bits (198), Expect(2) = 1e-028
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = -3 / -2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY KYLN++ P++R+ F+P+AC WA+G+NVFDL WR+ TE++H + E N D LW
Sbjct: 609 RYHKYLNYSHPLIREHFDPDACGWAFGMNVFDLVEWRKRNVTEIYHYWQEKNVDRTLW 436
Score = 51.0 bits (105), Expect(2) = 1e-028
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -3 / -2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGY 45
L GL++FYG T+PLD SWHV+GLGY
Sbjct: 423 LPPGLLTFYGLTEPLDPSWHVLGLGY 346
>gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 758
Score = 83.1 bits (175), Expect(2) = 5e-028
Identities = 26/58 (44%), Positives = 41/58 (70%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLNF+ P + + F+PNAC WA+ +N+FDL+ W+ T ++H + ++NED LW
Sbjct: 289 RFDKYLNFSNPKIYNNFDPNACGWAFDMNMFDLKQWKISNITGIYHHWQDLNEDRTLW 462
Score = 59.7 bits (124), Expect(2) = 5e-028
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY T PLD+SWHV+GLGY+P+++ I +AAV
Sbjct: 475 LPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAV 594
>gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01019F01 5', mRNA sequence
Length = 636
Score = 74.4 bits (156), Expect(2) = 4e-026
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TKPLDKSWHV+GLGYNPSIS + I+SAAV
Sbjct: 120 LPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAV 239
Score = 61.1 bits (127), Expect(2) = 4e-026
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -3 / +3
Query: 242 WAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
WAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 3 WAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 107
>gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P23 5', mRNA sequence
Length = 579
Score = 104 bits (222), Expect = 2e-022
Identities = 32/58 (55%), Positives = 47/58 (81%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +YLNF+ P++++RFNP ACAWA+G+N+FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 367 RYAQYLNFSHPLIKERFNPKACAWAFGMNIFDLDAWRREKCTEQYHYWQSLNEERTLW 540
>gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G069P39 5', mRNA sequence
Length = 568
Score = 80.8 bits (170), Expect(2) = 8e-022
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGEL 141
+ + YLNF+ P++ + F PN CAWAYG+N+FDLE WR+ + +H ++E N +L
Sbjct: 252 KLKSYLNFSHPLISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEENLKSDL 422
Score = 40.0 bits (81), Expect(2) = 8e-022
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+G+ +D WH++GLGY + S +A V
Sbjct: 444 LPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGV 563
>gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 80.8 bits (170), Expect(2) = 9e-022
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGEL 141
+ + YLNF+ P++ + F PN CAWAYG+N+FDLE WR+ + +H ++E N +L
Sbjct: 204 KLKSYLNFSHPLISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEENLKSDL 374
Score = 40.0 bits (81), Expect(2) = 9e-022
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+G+ +D WH++GLGY + S +A V
Sbjct: 396 LPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGV 515
>gb|CX659010.1|CX659010 PO01025C10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025C10 5', mRNA sequence
Length = 654
Score = 101 bits (215), Expect = 2e-021
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 447 RYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 620
>gb|CX659267.1|CX659267 PO01028E05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01028E05 5', mRNA sequence
Length = 623
Score = 101 bits (215), Expect = 2e-021
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 447 RYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLW 620
>gb|CK106989.1|CK106989 UB42BPD03.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 5', mRNA sequence
Length = 319
Score = 100 bits (214), Expect = 2e-021
Identities = 33/72 (45%), Positives = 50/72 (69%)
Frame = -3 / +2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELWDP 132
RY +Y+NF+ P+++++FNP ACAWAYG+N FDL+ WRR+ CTE +H + +NE+ L
Sbjct: 98 RYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRNLCQN 277
Query: 131 TSILTAGLMSFY 96
+ L G S +
Sbjct: 278 SGTLPPGFKSHF 313
>gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057G05 5', mRNA sequence
Length = 368
Score = 71.6 bits (150), Expect(2) = 5e-021
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL+ FY TKPL+KSWHV+GLGYNPSIS + I+SAAV
Sbjct: 97 LPPGLIKFYSTTKPLNKSWHVLGLGYNPSISMDEIQSAAV 216
Score = 46.0 bits (94), Expect(2) = 5e-021
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3 / +1
Query: 221 FDLETWRRDGCTELFHQYMEMNEDGELW 138
FDL+ WRR+ CTE +H + +NE+ LW
Sbjct: 1 FDLDAWRREKCTEKYHYWQNLNENRTLW 84
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 195,478,266
Number of Sequences: 369679
Number of extensions: 3036040
Number of successful extensions: 179434
Number of sequences better than 1.0e-020: 27
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 2931628403
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)