TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE40a10.yg.2.1
(709 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 110 3e-088
gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZA... 294 4e-079
gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA librar... 210 7e-059
gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Po... 222 1e-057
gb|AJ770061.1|AJ770061 AJ770061 Populus euphratica leaf 3-6... 198 4e-050
gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid librar... 191 5e-048
gb|AJ772088.1|AJ772088 AJ772088 Populus euphratica shoot in... 169 1e-041
gb|CK099401.1|CK099401 A066P21.5pR Hybrid aspen plasmid lib... 144 9e-040
gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6... 149 1e-035
gb|BU894932.1|BU894932 X017A08 Populus wood cDNA library Po... 110 2e-029
gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library... 127 1e-028
gb|CN518891.1|CN518891 GQ0102.B3_E01 GQ010 Populus trichoca... 82 1e-021
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 110 bits (235), Expect(6) = 3e-088
Identities = 39/53 (73%), Positives = 48/53 (90%)
Frame = -1 / +2
Query: 361 LEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQK 203
LEV LLL+VY+AYGY GG+ S+IL+T+SSWF+ +SWLFAPY+FNPSGFEWQK
Sbjct: 28280 LEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPYLFNPSGFEWQK 28438
Score = 85.4 bits (180), Expect(6) = 3e-088
Identities = 32/41 (78%), Positives = 39/41 (95%)
Frame = -1 / +2
Query: 574 LMKAVFSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAK 452
+++AV +FITMQLQ CSVFFTFSLGT++HYFGRTILHGGA+
Sbjct: 27899 MLQAVVNFITMQLQLCSVFFTFSLGTKSHYFGRTILHGGAR 28021
Score = 83.1 bits (175), Expect(6) = 3e-088
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = -1 / +2
Query: 205 KTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEE 104
+TVEDF DWTNWL Y+GG+GVKG SWE+WWDEE
Sbjct: 28514 RTVEDFSDWTNWLFYRGGIGVKGQESWEAWWDEE 28615
Score = 71.2 bits (149), Expect(6) = 1e-038
Identities = 31/58 (53%), Positives = 39/58 (67%)
Frame = +3 / -3
Query: 189 KSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRRRATSS 362
++S FCHS P+GL *GAKSQD NQLL V R+ ++ PP +YPYA T + TSS
Sbjct: 28452 RNSAYFCHSNPDGLNK*GAKSQDRAINQLLTVRRM*DNAPPSLYPYARYTTSKSTTSS 28279
Score = 68.9 bits (144), Expect(6) = 3e-088
Identities = 26/29 (89%), Positives = 29/29 (100%)
Frame = -1 / +3
Query: 451 YRATGRGFVVRHIKFAENYRLYSRSHFVK 365
Y+ATGRGFVVRHI+F+ENYRLYSRSHFVK
Sbjct: 28110 YQATGRGFVVRHIRFSENYRLYSRSHFVK 28196
Score = 62.0 bits (129), Expect(6) = 1e-038
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +3 / -3
Query: 456 APP*RIVLPK*CVLVPSEKVKNTEQNWSCIVIKLKTA 566
APP*R+VLPK*C VP+E VK TEQ+ SCIV+KL TA
Sbjct: 28017 APP*RMVLPK*CDFVPNENVKKTEQS*SCIVMKLTTA 27907
Score = 56.5 bits (117), Expect(6) = 3e-088
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = -1 / +2
Query: 103 QAHIQTFRGRILETILSLRFLMFQYGIVY 17
QAHI+T GRI+ET+LSLRF +FQYG+VY
Sbjct: 29537 QAHIRTLSGRIMETLLSLRFFIFQYGVVY 29623
Score = 51.9 bits (107), Expect(6) = 3e-088
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1 / +1
Query: 664 LDAALNAQFLXXIGIXTXVPMIMGFILXLGLMK 566
L AALN QFL IGI T VPM++GFIL LG ++
Sbjct: 27226 LSAALNTQFLFQIGIFTAVPMVLGFILELGFLR 27324
Score = 42.8 bits (87), Expect(6) = 1e-038
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +3 / -3
Query: 18 YTMPY*NMRNLRLRIVSRIRPLNVWICAC 104
YT PY ++NLRL+ VS I PL V ICAC
Sbjct: 29622 YTTPYWKIKNLRLKRVSIILPLKVRICAC 29536
Score = 42.3 bits (86), Expect(6) = 1e-038
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3 / -2
Query: 366 LTK*LRE*SL*FSANFMCRTTKPLPVARY 452
LTK LRE*SL*FS N + RTT P PVA Y
Sbjct: 28195 LTKWLRE*SL*FSENLIWRTTNPRPVA*Y 28109
Score = 38.2 bits (77), Expect(6) = 1e-038
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +1 / -1
Query: 100 PAPHPTKIPNCCHPLHQLHLYKVTSLSSHQSPQQS 204
P HPTK PN P Q HL K +LS+H SP S
Sbjct: 28619 PILHPTKPPNFLVP*PQFHLCKKANLSNH*SPPLS 28515
Score = 30.4 bits (60), Expect(6) = 1e-038
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2 / -3
Query: 572 QPQLXNETHYHRDXXXNTNLXQKLSIQS 655
+ QL +E H NTNL +KLS+QS
Sbjct: 27318 ESQL*DEAQNHWHSSKNTNLKEKLSVQS 27235
>gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 645
Score = 294 bits (636), Expect = 4e-079
Identities = 111/192 (57%), Positives = 143/192 (74%)
Frame = -1 / +1
Query: 664 LDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHY 485
L AL +Q IG +PM+M L G A+ F+ MQLQ VFFTFSLGT+THY
Sbjct: 64 LQVALASQSFVQIGFLMALPMLMEIGLERGFRTALSEFLLMQLQLAPVFFTFSLGTKTHY 243
Query: 484 FGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGG 305
+GRT+LHGGAKYR+TGRGFVV H KFA+NYRLYSRSHFVK +E+ +LL+VY +G
Sbjct: 244 YGRTLLHGGAKYRSTGRGFVVFHAKFADNYRLYSRSHFVKGIEMMILLVVYQIFGQPYRS 423
Query: 304 SSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSW 125
+ +++LITIS WF+V +WLFAP++FNPSGFEWQK V+D+ DW W+ +GG+GV + SW
Sbjct: 424 AVAYVLITISMWFMVGTWLFAPFLFNPSGFEWQKIVDDWSDWNKWISNRGGIGVPPEKSW 603
Query: 124 ESWWDEEQAHIQ 89
ESWW+EEQ H++
Sbjct: 604 ESWWEEEQEHLR 639
Score = 80.3 bits (169), Expect(3) = 3e-029
Identities = 43/71 (60%), Positives = 47/71 (66%)
Frame = +3 / -2
Query: 333 *TIRRRATSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEK 512
*T + S LTK*LRE*SL* SAN +TTKPLPV YFAPP VLP * V VP E
Sbjct: 395 *TTSKIIISIPLTK*LRE*SL*LSANLAWKTTKPLPVDLYFAPPCSNVLP**WVFVPREN 216
Query: 513 VKNTEQNWSCI 545
VKNT + +CI
Sbjct: 215 VKNTGASCNCI 183
Score = 70.7 bits (148), Expect(2) = 5e-024
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +2 / -1
Query: 332 VNDQEESNLKRFDKVTSRIEPIIFSKLYVPNNKTSSSSTILCTAMKDCSTKVMCPCSKRK 511
+N+++ +L DKVT+ I+PI+ SK + ++KTS+S I C M+ C + V+ C+KRK
Sbjct: 396 INNKQNHHLNTLDKVTAGIKPIVVSKFGMEDHKTSTSGPIFCPTMQQCPSIVVGLCAKRK 217
Query: 512 GEKHRTELELH 544
EK+R L LH
Sbjct: 216 CEKYRC*L*LH 184
Score = 60.2 bits (125), Expect(2) = 5e-024
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +2 / -1
Query: 95 MRLLLIPPRFPTVVTLYTNSTFIK*PVCPVIKVLNSLLPLETRRVENVRREKPGHNEEP 271
M L PP FPT+ T S+ + P+ P+ ++N+LLPL+TRR+E +KPG N +P
Sbjct: 633 MLLFFFPP*FPTLFWWDTYSSTVTYPLVPIRPIINNLLPLKTRRIEEEWSKKPGTNHKP 457
Score = 58.3 bits (121), Expect(3) = 3e-029
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = +3 / -2
Query: 180 QSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIR 290
QS +SST+FCHSKPEGLK GAKSQ T N + IVIR
Sbjct: 548 QSDQSSTIFCHSKPEGLKRNGAKSQVPTINHIDIVIR 438
Score = 27.6 bits (54), Expect(3) = 3e-029
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3 / -2
Query: 96 CACSSSHQDSQ 128
C+CSSSH DSQ
Sbjct: 632 CSCSSSHHDSQ 600
>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 737
Score = 210 bits (453), Expect(2) = 7e-059
Identities = 75/122 (61%), Positives = 97/122 (79%)
Frame = -1 / +2
Query: 454 KYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFILITIS 275
KYR TGRGFVV H KFAENYRLYSRSHFVK +E+ +LL+VY +G + +++LITIS
Sbjct: 2 KYRPTGRGFVVFHAKFAENYRLYSRSHFVKGIEMMILLVVYQIFGQPYRSAVAYLLITIS 181
Query: 274 SWFLVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAH 95
WF+V +WLFAP++FNPSGFEWQK V+D+ DW W+ +GG+GV + SWESWW+EEQ H
Sbjct: 182 MWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWISNRGGIGVPSEKSWESWWEEEQEH 361
Query: 94 IQ 89
++
Sbjct: 362 LR 367
Score = 37.3 bits (75), Expect(2) = 7e-059
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -1 / +2
Query: 82 RGRILETILSLRFLMFQYGIVY 17
RG + E +LSLRF ++QYG+VY
Sbjct: 380 RGTLAEILLSLRFFIYQYGLVY 445
>gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 467
Score = 222 bits (480), Expect = 1e-057
Identities = 89/149 (59%), Positives = 112/149 (75%)
Frame = -1 / +2
Query: 655 ALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHYFGR 476
AL +Q IG +PM+M L G A+ FI MQLQ VFFTFSLGT+THY+GR
Sbjct: 20 ALASQSFVQIGFLMALPMMMEIGLEKGFRNALSDFILMQLQLAPVFFTFSLGTKTHYYGR 199
Query: 475 TILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSS 296
T+LHGG+ YRATGRGFVV H KFA+NYRLYSRSHFVK +E+ +LL+V+ +G + G +
Sbjct: 200 TLLHGGSAYRATGRGFVVFHAKFADNYRLYSRSHFVKGIELMILLLVFHIFGRSYRGVFA 379
Query: 295 FILITISSWFLVMSWLFAPYIFNPSGFEW 209
++LITIS WF+V +WLFAP++FNPSGFEW
Sbjct: 380 YVLITISMWFMVGTWLFAPFLFNPSGFEW 466
Score = 103 bits (220), Expect = 1e-021
Identities = 60/126 (47%), Positives = 69/126 (54%)
Frame = +3 / -3
Query: 210 HSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRRRATSSALTK*LRE* 389
HS P+GLK GAKS T N + IVI+ + P + P T R S LTK LRE
Sbjct: 465 HSNPDGLKRKGAKSHVPTMNHIDIVIKTYANTPLYERPNIWNTRSRIINSIPLTKWLREY 286
Query: 390 SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKVKNTEQNWSCIVIKLKTAF 569
+L* SAN TTKP PVA Y PP VLP * V VP E VKNT N +CI +K A
Sbjct: 285 NL*LSANLAWNTTKPRPVALYAEPPCSNVLP***VFVPRENVKNTGANCNCINMKSLNAL 106
Query: 570 ISPSXR 587
+P R
Sbjct: 105 RNPFSR 88
>gb|AJ770061.1|AJ770061 AJ770061 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100006E01F1, mRNA sequence
Length = 295
Score = 198 bits (426), Expect = 4e-050
Identities = 79/98 (80%), Positives = 90/98 (91%)
Frame = -1 / -1
Query: 628 IGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKY 449
IGI T VPM++GFIL LG ++AV SFITMQLQ CSVFFTFSLGT++HYFGRTILHGGA+Y
Sbjct: 295 IGIFTAVPMVLGFILELGFLRAVVSFITMQLQLCSVFFTFSLGTKSHYFGRTILHGGARY 116
Query: 448 RATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIV 335
+ATGRGFVVRHI+F+ENYRLYSRSHFVK LEV LLL+V
Sbjct: 115 QATGRGFVVRHIRFSENYRLYSRSHFVKGLEVVLLLVV 2
Score = 121 bits (259), Expect = 4e-027
Identities = 57/87 (65%), Positives = 65/87 (74%)
Frame = +3 / +3
Query: 336 TIRRRATSSALTK*LRE*SL*FSANFMCRTTKPLPVARYFAPP*RIVLPK*CVLVPSEKV 515
T + TSS LTK LRE*SL*FS N + RTT P PVA Y APP*R+VLPK*C VP+E V
Sbjct: 3 TTSKSTTSSPLTKWLRE*SL*FSENLIWRTTNPRPVA*YLAPP*RMVLPK*CDFVPNENV 182
Query: 516 KNTEQNWSCIVIKLKTAFISPSXRMKP 596
K TEQ+ SCIV+KL TA +PS +MKP
Sbjct: 183 KKTEQS*SCIVMKLTTALKNPSSKMKP 263
>gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 268
Score = 191 bits (411), Expect = 5e-048
Identities = 68/89 (76%), Positives = 79/89 (88%)
Frame = -1 / +2
Query: 391 LYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFE 212
LYSRSHFVK LEV LLL+VY+AYGY GG+ S+IL+T+SSWF+ +SWLFAPY+FNPSGFE
Sbjct: 2 LYSRSHFVKGLEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPYLFNPSGFE 181
Query: 211 WQKTVEDFDDWTNWLLYKGGVGVKGDNSW 125
WQKTVEDF DWTNWL Y+GG+GVKG SW
Sbjct: 182 WQKTVEDFSDWTNWLFYRGGIGVKGQESW 268
Score = 101 bits (216), Expect = 4e-021
Identities = 48/75 (64%), Positives = 55/75 (73%)
Frame = +3 / -2
Query: 168 NQFVQSSKSSTVFCHSKPEGLKM*GAKSQDITRNQLLIVIRINEDEPPFVYPYAM*TIRR 347
+QFVQS KSSTVFCHS P+GL *GAKSQD NQLL V R+ ++ PP +YPYA T +
Sbjct: 225 SQFVQSLKSSTVFCHSNPDGLNK*GAKSQDRAINQLLTVRRM*DNAPPSLYPYARYTTSK 46
Query: 348 RATSSALTK*LRE*S 392
TSS LTK LRE*S
Sbjct: 45 STTSSPLTKWLRE*S 1
>gb|AJ772088.1|AJ772088 AJ772088 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700001C10F1, mRNA sequence
Length = 341
Score = 169 bits (364), Expect = 1e-041
Identities = 64/97 (65%), Positives = 83/97 (85%)
Frame = -1 / -2
Query: 523 VFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALL 344
VFFTFSLGT+THY+GRT+LHGG+ YRATGRGFVV H KFA+NYRLYSRSHFVK +E+ +L
Sbjct: 292 VFFTFSLGTKTHYYGRTLLHGGSAYRATGRGFVVFHAKFADNYRLYSRSHFVKGIELMIL 113
Query: 343 LIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPYI 233
L+V+ +G + G +++LITIS WF+V +WLFAP++
Sbjct: 112 LLVFHIFGRSYRGVVAYVLITISMWFMVGTWLFAPFL 2
>gb|CK099401.1|CK099401 A066P21.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A066P21 5', mRNA sequence
Length = 323
Score = 144 bits (310), Expect(3) = 9e-040
Identities = 52/70 (74%), Positives = 64/70 (91%)
Frame = -1 / +1
Query: 415 IKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFILITISSWFLVMSWLFAPY 236
++F+ENYRLYSRSHFVK LEV LLL+VY+AYGY GG+ S+IL+T+SSWF+ +SWLFAPY
Sbjct: 70 LEFSENYRLYSRSHFVKGLEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPY 249
Query: 235 IFNPSGFEWQ 206
+FNPSGFEWQ
Sbjct: 250 LFNPSGFEWQ 279
Score = 35.4 bits (71), Expect(3) = 9e-040
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1 / +2
Query: 208 QKTVEDFDDWTNWL 167
++TVEDF DWTNWL
Sbjct: 278 KQTVEDFSDWTNWL 319
Score = 20.8 bits (39), Expect(3) = 9e-040
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -1 / +3
Query: 433 GFVVRHIK 410
GFVVRHI+
Sbjct: 51 GFVVRHIR 74
>gb|AJ776567.1|AJ776567 AJ776567 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400015B12F1, mRNA sequence
Length = 468
Score = 149 bits (321), Expect = 1e-035
Identities = 63/102 (61%), Positives = 73/102 (71%)
Frame = -1 / +3
Query: 664 LDAALNAQFLXXIGIXTXVPMIMGFILXLGLMKAVFSFITMQLQFCSVFFTFSLGTRTHY 485
L AL +Q IG +PM+M L G A+ FI MQLQ VFFTFSLGT+THY
Sbjct: 162 LQVALASQSFVQIGFLMALPMMMEIGLEKGFHNALSDFILMQLQLAPVFFTFSLGTKTHY 341
Query: 484 FGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKAL 359
+GRT+LHGG+ YRATGRGFVV H KFA+NYRLYSRSHFVK +
Sbjct: 342 YGRTLLHGGSAYRATGRGFVVFHAKFADNYRLYSRSHFVKGI 467
>gb|BU894932.1|BU894932 X017A08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 651
Score = 110 bits (234), Expect(2) = 2e-029
Identities = 35/59 (59%), Positives = 48/59 (81%)
Frame = -1 / +3
Query: 262 VMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQT 86
V+SW+ AP++FNPSGF+W KTV DFDD+ NW+ Y+GGV K + SW+ WW+EEQ H++T
Sbjct: 3 VVSWIMAPFVFNPSGFDWLKTVYDFDDFMNWIWYQGGVFAKSEQSWDRWWNEEQDHLRT 179
Score = 39.1 bits (79), Expect(2) = 2e-029
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = -1 / +3
Query: 79 GRILETILSLRFLMFQYGIVYLPG 8
G++L+ IL LRF FQYGIVY G
Sbjct: 192 GKLLDVILDLRFFFFQYGIVYQLG 263
>gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B010P30 5', mRNA sequence
Length = 297
Score = 127 bits (273), Expect(2) = 1e-028
Identities = 49/83 (59%), Positives = 66/83 (79%)
Frame = -1 / +1
Query: 451 YRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYTKGGSSSFILITISS 272
YRATG GFVV H KFA+NYRLYSRSHFVK +E+ +LL+V+ +G + G +++LITIS
Sbjct: 7 YRATGCGFVVFHAKFADNYRLYSRSHFVKGIELMILLLVFHIFGRSYRGVFAYVLITISM 186
Query: 271 WFLVMSWLFAPYIFNPSGFEWQK 203
WF+V +WLFAP++FNPSG ++
Sbjct: 187 WFMVGTWLFAPFLFNPSGLSGKR 255
Score = 18.0 bits (33), Expect(2) = 1e-028
Identities = 4/7 (57%), Positives = 7/7 (100%)
Frame = -1 / +3
Query: 187 DDWTNWL 167
DD+T+W+
Sbjct: 261 DDYTDWI 281
>gb|CN518891.1|CN518891 GQ0102.B3_E01 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_E01 5', mRNA sequence
Length = 508
Score = 81.7 bits (172), Expect(2) = 1e-021
Identities = 24/44 (54%), Positives = 34/44 (77%)
Frame = -1 / +1
Query: 220 GFEWQKTVEDFDDWTNWLLYKGGVGVKGDNSWESWWDEEQAHIQ 89
GFEWQK ++D+ DW W+ +GG+GV D SWESWW++EQ H++
Sbjct: 1 GFEWQKILDDYTDWNKWINNRGGIGVHPDKSWESWWEKEQEHLR 132
Score = 40.9 bits (83), Expect(2) = 1e-021
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = -1 / +1
Query: 112 DEEQAHIQTFRGRILETILSLRFLMFQYGIVY 17
++E RG I+E +LSLRF +FQYG+VY
Sbjct: 115 EQEHLRFSGKRGIIVEILLSLRFFIFQYGLVY 210
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 335,297,174
Number of Sequences: 369679
Number of extensions: 4801594
Number of successful extensions: 47656
Number of sequences better than 1.0e-020: 14
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8890063140
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)