TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF332176.2.1
(912 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 124 4e-054
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 124 4e-054
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 124 4e-054
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 124 3e-053
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 124 5e-053
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 124 3e-048
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 126 5e-045
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 124 2e-044
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 122 1e-043
gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Po... 98 6e-035
gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Po... 111 1e-034
gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Po... 106 2e-033
gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus t... 100 7e-031
gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Po... 97 1e-030
gb|BU893439.1|BU893439 P077G06 Populus petioles cDNA librar... 95 1e-030
gb|BU895814.1|BU895814 X031D08 Populus wood cDNA library Po... 98 2e-028
gb|CX654070.1|CX654070 PO02012F04 Poplar SC cDNA library Po... 90 2e-028
gb|CX655588.1|CX655588 PO02036H10 Poplar SC cDNA library Po... 89 7e-027
gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library... 99 3e-024
gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Popul... 56 1e-022
gb|CF234058.1|CF234058 PtaJXO2A9A0901 Poplar cDNA library f... 62 4e-022
gb|BU889652.1|BU889652 P023H02 Populus petioles cDNA librar... 54 4e-021
gb|BU896063.1|BU896063 X034H10 Populus wood cDNA library Po... 51 8e-021
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 124 bits (266), Expect(4) = 4e-054
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = +2 / -1
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ IQ +RVPC +PG TVTFH++ GSNP Y A +
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 408
Query: 389 VEYENGDGDVVQVDLMESSPDD 454
VEYE+GDG++ V+L ++ D
Sbjct: 407 VEYEDGDGELKSVELKQALDSD 342
Score = 55.6 bits (115), Expect(4) = 4e-054
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2 / -1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PFS+ S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 809 GSDGGACGYGNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVV 630
Query: 182 DMNYYPVAP 208
+ P +P
Sbjct: 629 ITDQCPGSP 603
Score = 44.1 bits (90), Expect(4) = 4e-054
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / -1
Query: 563 ESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
ESGKT+VA VIPA W P Y S+V F *
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 156
Score = 44.1 bits (90), Expect(4) = 4e-054
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2 / -1
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTN 562
W PM++SWG++W++D L+ P S+++T+
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIKLTS 249
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 124 bits (266), Expect(4) = 4e-054
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = +2 / -2
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ IQ +RVPC +PG TVTFH++ GSNP Y A +
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 408
Query: 389 VEYENGDGDVVQVDLMESSPDD 454
VEYE+GDG++ V+L ++ D
Sbjct: 407 VEYEDGDGELKSVELKQALDSD 342
Score = 55.6 bits (115), Expect(4) = 4e-054
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2 / -2
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PFS+ S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 809 GSDGGACGYGNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVV 630
Query: 182 DMNYYPVAP 208
+ P +P
Sbjct: 629 ITDQCPGSP 603
Score = 44.1 bits (90), Expect(4) = 4e-054
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / -2
Query: 563 ESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
ESGKT+VA VIPA W P Y S+V F *
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 156
Score = 44.1 bits (90), Expect(4) = 4e-054
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2 / -2
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTN 562
W PM++SWG++W++D L+ P S+++T+
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIKLTS 249
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 124 bits (266), Expect(4) = 4e-054
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = +2 / -1
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ IQ +RVPC +PG TVTFH++ GSNP Y A +
Sbjct: 567 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 388
Query: 389 VEYENGDGDVVQVDLMESSPDD 454
VEYE+GDG++ V+L ++ D
Sbjct: 387 VEYEDGDGELKSVELKQALDSD 322
Score = 55.6 bits (115), Expect(4) = 4e-054
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2 / -1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PFS+ S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 789 GSDGGACGYGNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVV 610
Query: 182 DMNYYPVAP 208
+ P +P
Sbjct: 609 ITDQCPGSP 583
Score = 44.1 bits (90), Expect(4) = 4e-054
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / -1
Query: 563 ESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
ESGKT+VA VIPA W P Y S+V F *
Sbjct: 225 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 136
Score = 44.1 bits (90), Expect(4) = 4e-054
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2 / -1
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTN 562
W PM++SWG++W++D L+ P S+++T+
Sbjct: 318 WVPMQKSWGAVWKLDAGSLLRAPLSIKLTS 229
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 124 bits (266), Expect(4) = 3e-053
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = +2 / -3
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ IQ +RVPC +PG TVTFH++ GSNP Y A +
Sbjct: 639 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 460
Query: 389 VEYENGDGDVVQVDLMESSPDD 454
VEYE+GDG++ V+L ++ D
Sbjct: 459 VEYEDGDGELKSVELKQALDSD 394
Score = 52.8 bits (109), Expect(4) = 3e-053
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +2 / -3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PF + S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 861 GSDGGACGYGNAVEQAPFFSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVV 682
Query: 182 DMNYYPVAP 208
+ P +P
Sbjct: 681 ITDQCPGSP 655
Score = 44.1 bits (90), Expect(4) = 3e-053
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / -3
Query: 563 ESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
ESGKT+VA VIPA W P Y S+V F *
Sbjct: 297 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 208
Score = 44.1 bits (90), Expect(4) = 3e-053
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2 / -3
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTN 562
W PM++SWG++W++D L+ P S+++T+
Sbjct: 390 WVPMQKSWGAVWKLDAGSLLRAPLSIKLTS 301
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 124 bits (266), Expect(4) = 5e-053
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = +2 / -3
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ IQ +RVPC +PG TVTFH++ GSNP Y A +
Sbjct: 566 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 387
Query: 389 VEYENGDGDVVQVDLMESSPDD 454
VEYE+GDG++ V+L ++ D
Sbjct: 386 VEYEDGDGELKSVELKQALDSD 321
Score = 51.9 bits (107), Expect(4) = 5e-053
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +2 / -3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V P S+ S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 788 GSDGGACGYGNAVEQAPSSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVV 609
Query: 182 DMNYYPVAP 208
+ P +P
Sbjct: 608 ITDQCPGSP 582
Score = 44.1 bits (90), Expect(4) = 5e-053
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / -3
Query: 563 ESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
ESGKT+VA VIPA W P Y S+V F *
Sbjct: 224 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 135
Score = 44.1 bits (90), Expect(4) = 5e-053
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2 / -3
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTN 562
W PM++SWG++W++D L+ P S+++T+
Sbjct: 317 WVPMQKSWGAVWKLDAGSLLRAPLSIKLTS 228
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 124 bits (266), Expect(4) = 3e-048
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = +2 / -2
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ IQ +RVPC +PG TVTFH++ GSNP Y A +
Sbjct: 591 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 412
Query: 389 VEYENGDGDVVQVDLMESSPDD 454
VEYE+GDG++ V+L ++ D
Sbjct: 411 VEYEDGDGELKSVELKQALDSD 346
Score = 44.1 bits (90), Expect(4) = 3e-048
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / -2
Query: 563 ESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
ESGKT+VA VIPA W P Y S+V F *
Sbjct: 249 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 160
Score = 44.1 bits (90), Expect(4) = 3e-048
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2 / -2
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTN 562
W PM++SWG++W++D L+ P S+++T+
Sbjct: 342 WVPMQKSWGAVWKLDAGSLLRAPLSIKLTS 253
Score = 35.9 bits (72), Expect(4) = 3e-048
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2 / -2
Query: 92 KDGKGCGSCYQIRCKAHPACSGVAETVIITDMNYYPVAP 208
K G+GCG+CYQ++C + + V + + P +P
Sbjct: 723 KSGQGCGACYQVKCTSSSNAACSGNPVTVVITDQCPGSP 607
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 126 bits (269), Expect(4) = 5e-045
Identities = 48/82 (58%), Positives = 63/82 (76%)
Frame = +2 / +3
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ I+ +RVPC +PG TVTFH++ GSNP Y A L
Sbjct: 87 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFATL 266
Query: 389 VEYENGDGDVVQVDLMESSPDD 454
VEYE+GDGD+ V+L ++ D
Sbjct: 267 VEYEDGDGDLKSVELKQALNSD 332
Score = 44.1 bits (90), Expect(4) = 5e-045
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / +3
Query: 563 ESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
ESGKT+VA VIPA W P Y S+V F *
Sbjct: 429 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 518
Score = 44.1 bits (90), Expect(4) = 5e-045
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2 / +3
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTN 562
W PM++SWG++W++D L+ P S+++T+
Sbjct: 336 WVPMQKSWGAVWKLDAGSLLRAPLSIKLTS 425
Score = 23.5 bits (45), Expect(4) = 5e-045
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2 / +3
Query: 137 AHPACSGVAETVIITD 184
++ ACSG TV+ITD
Sbjct: 6 SNAACSGNPVTVVITD 53
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 124 bits (266), Expect(4) = 2e-044
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = +2 / -1
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ IQ +RVPC +PG TVTFH++ GSNP Y A +
Sbjct: 663 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 484
Query: 389 VEYENGDGDVVQVDLMESSPDD 454
VEYE+GDG++ V+L ++ D
Sbjct: 483 VEYEDGDGELKSVELKQALDSD 418
Score = 44.1 bits (90), Expect(4) = 2e-044
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / -1
Query: 563 ESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
ESGKT+VA VIPA W P Y S+V F *
Sbjct: 321 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 232
Score = 44.1 bits (90), Expect(4) = 2e-044
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2 / -1
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTN 562
W PM++SWG++W++D L+ P S+++T+
Sbjct: 414 WVPMQKSWGAVWKLDAGSLLRAPLSIKLTS 325
Score = 23.1 bits (44), Expect(4) = 2e-044
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2 / -1
Query: 146 ACSGVAETVIITD 184
ACSG TV+ITD
Sbjct: 735 ACSGNPVTVVITD 697
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 122 bits (261), Expect(3) = 1e-043
Identities = 46/75 (61%), Positives = 60/75 (80%)
Frame = +2 / +2
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ IQ +RVPC +PG TVTFH++ GSNP Y A +
Sbjct: 452 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 631
Query: 389 VEYENGDGDVVQVDL 433
VEYE+GDG++ V+L
Sbjct: 632 VEYEDGDGELKSVEL 676
Score = 55.6 bits (115), Expect(3) = 1e-043
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2 / +2
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PFS+ S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 230 GSDGGACGYGNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVV 409
Query: 182 DMNYYPVAP 208
+ P +P
Sbjct: 410 ITDQCPGSP 436
Score = 37.3 bits (75), Expect(3) = 1e-043
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2 / +1
Query: 473 WEPMRESWGSIWRMDTRRPLQGP 541
W PM++SWG++W++D L+ P
Sbjct: 700 WVPMQKSWGAVWKLDAGSLLRAP 768
>gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 767
Score = 97.7 bits (207), Expect(3) = 6e-035
Identities = 36/77 (46%), Positives = 53/77 (68%)
Frame = +2 / +1
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSG AFG MA N +LR+ G + + ++R PC+YPG + FH+ GS +L++LV
Sbjct: 220 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLV 399
Query: 392 EYENGDGDVVQVDLMES 442
E+E+GDGDV + + E+
Sbjct: 400 EFEDGDGDVGSMHIREA 450
Score = 58.3 bits (121), Expect(3) = 6e-035
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2 / +1
Query: 38 VNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIITD 184
V++ PF A + +FK+G+GCG+CY++RC CS A T+I+TD
Sbjct: 37 VDVKPFRARVGAVSPVLFKNGEGCGACYKVRCLDKSICSRRAVTIIVTD 183
Score = 29.9 bits (59), Expect(3) = 6e-035
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2 / +1
Query: 557 TNESGKTLVADQVIPADWQPDNVYSSIVQF 646
T + +TL A +VIP +W P Y+S + F
Sbjct: 547 TLSTRRTLSAREVIPRNWAPKATYTSRLNF 636
>gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B10 5', mRNA sequence
Length = 639
Score = 111 bits (236), Expect(2) = 1e-034
Identities = 42/69 (60%), Positives = 54/69 (78%)
Frame = +2 / +2
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ I+ +RVPC +PG VTFH++ GSNP Y A L
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKKVTFHVDSGSNPYYFATL 610
Query: 389 VEYENGDGD 415
VE ++GDGD
Sbjct: 611 VE*QHGDGD 637
Score = 56.1 bits (116), Expect(2) = 1e-034
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2 / +2
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PFS++ S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 209 GSDGGACGYGNAVEQAPFSSLISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVV 388
Query: 182 DMNYYPVAP 208
+ P P
Sbjct: 389 ITDQCPGGP 415
>gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043E09 5', mRNA sequence
Length = 621
Score = 106 bits (226), Expect(2) = 2e-033
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = +2 / +2
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVL 388
+HFDLSGTAFGAMA D+LR+AG++ I+ +RVPC +PG TVTFH++ GSNP Y A L
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFATL 610
Query: 389 VEY 397
VEY
Sbjct: 611 VEY 619
Score = 56.5 bits (117), Expect(2) = 2e-033
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2 / +2
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PFS++ S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 209 GSDGGACGYGNAVEQAPFSSLISAGGDSIYKSGQGCGACYQVKCTSSSNAAWSGNPVTVV 388
Query: 182 DMNYYPVAP 208
+ P P
Sbjct: 389 ITDQCPGGP 415
>gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_J04 3', mRNA sequence
Length = 913
Score = 99.6 bits (211), Expect(3) = 7e-031
Identities = 37/77 (48%), Positives = 53/77 (68%)
Frame = +2 / -2
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSG AFG MA N +LR+ G I + ++R PC+YPG + FH+ GS +L++LV
Sbjct: 798 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSILV 619
Query: 392 EYENGDGDVVQVDLMES 442
E+E+GDGDV + + E+
Sbjct: 618 EFEDGDGDVGSMHIREA 568
Score = 39.1 bits (79), Expect(3) = 7e-031
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2 / -2
Query: 107 CGSCYQIRCKAHPACSGVAETVIITD 184
CG+CY++RC CS A T+I+TD
Sbjct: 912 CGACYKVRCLDKSICSRRAVTIIVTD 835
Score = 33.6 bits (67), Expect(3) = 7e-031
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2 / -2
Query: 557 TNESGKTLVADQVIPADWQPDNVYSSIVQFE**Y 658
T +G+TL A +VIP +W P Y+S + F *Y
Sbjct: 471 TLTTGRTLSAREVIPRNWAPKATYTSRLNFFH*Y 370
>gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060H08 5', mRNA sequence
Length = 581
Score = 97.3 bits (206), Expect(2) = 1e-030
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = +2 / +1
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLA 382
+HFDLSGTAFGAMA D+LR+AG++ I+ +RVPC +PG TVTFH++ GSNP Y A
Sbjct: 403 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFA 576
Score = 56.1 bits (116), Expect(2) = 1e-030
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2 / +1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PFS++ S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 181 GSDGGACGYGNAVEQAPFSSLISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVV 360
Query: 182 DMNYYPVAP 208
+ P P
Sbjct: 361 ITDQCPGGP 387
>gb|BU893439.1|BU893439 P077G06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 463
Score = 94.5 bits (200), Expect(2) = 1e-030
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = +2 / +3
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSG A G MA N +LR+ G + + ++R PC+YPG + FH+ GS +L++LV
Sbjct: 246 HFDLSGAAIGRMAISGENGQLRNRGELPVSYRRTPCKYPGKNIAFHVNEGSTDYWLSLLV 425
Query: 392 EYENGDGDV 418
E+E+GDGDV
Sbjct: 426 EFEDGDGDV 452
Score = 58.8 bits (122), Expect(2) = 1e-030
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +2 / +3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V++ PF A + +FK+G+GCG+CY++RC CS A T+I+T
Sbjct: 27 GSDGGACGYGSLVDVKPFRARVGAVSPVLFKNGEGCGACYKVRCLDKSICSRRAVTIIVT 206
Query: 182 D 184
D
Sbjct: 207 D 209
>gb|BU895814.1|BU895814 X031D08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 624
Score = 98.2 bits (208), Expect(2) = 2e-028
Identities = 37/78 (47%), Positives = 53/78 (67%)
Frame = +2 / +1
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSG AFG MA N +LR+ G + + ++R PC+YPG + FH+ GS +L++LV
Sbjct: 169 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLV 348
Query: 392 EYENGDGDVVQVDLMESS 445
E+E+GDGDV + + E S
Sbjct: 349 EFEDGDGDVGSMHIREVS 402
Score = 47.8 bits (98), Expect(2) = 2e-028
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2 / +1
Query: 68 SCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIITD 184
+ G +FK+G+G G+CY++RC CS A T+I+TD
Sbjct: 16 TAGEPVLFKNGEGRGACYKVRCLDKSICSRRAVTIIVTD 132
>gb|CX654070.1|CX654070 PO02012F04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012F04 5', mRNA sequence
Length = 591
Score = 90.0 bits (190), Expect(2) = 2e-028
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = +2 / +2
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSN 367
+HFDLSGTAFGAMA D+LR+AG++ I+ +RVPC +PG TVTFH++ GSN
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSN 589
Score = 56.1 bits (116), Expect(2) = 2e-028
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2 / +2
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PFS++ S G + I+K G+GCG+CYQ++C + + V +
Sbjct: 209 GSDGGACGYGNAVEQAPFSSLISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVV 388
Query: 182 DMNYYPVAP 208
+ P P
Sbjct: 389 ITDQCPGGP 415
>gb|CX655588.1|CX655588 PO02036H10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02036H10 5', mRNA sequence
Length = 362
Score = 88.6 bits (187), Expect(2) = 7e-027
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +2 / +3
Query: 209 YHFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLA 382
+H DLSGTAFGAMA D+LR+A ++ I+ +RVPC +PG TVTFH++ GS+P Y A
Sbjct: 186 FHLDLSGTAFGAMAISGKEDQLRNAAVLQIEHQRVPCNWPGKTVTFHVDSGSHPYYSA 359
Score = 52.4 bits (108), Expect(2) = 7e-027
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2 / +3
Query: 50 PFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIITDMNYYPVAP 208
PFS++ S G + I+K G+GCG+CYQ++C + + V + + P P
Sbjct: 12 PFSSLISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVVITDQCPGGP 170
>gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 493
Score = 99.1 bits (210), Expect(2) = 3e-024
Identities = 37/77 (48%), Positives = 52/77 (67%)
Frame = +2 / +1
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSG AFG MA N +LR+ G I + ++R PC YPG + FH+ GS +L++LV
Sbjct: 67 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCNYPGKNIAFHVNEGSTDYWLSILV 246
Query: 392 EYENGDGDVVQVDLMES 442
E+E+GDGDV + + E+
Sbjct: 247 EFEDGDGDVGSMHIREA 297
Score = 33.1 bits (66), Expect(2) = 3e-024
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2 / +1
Query: 557 TNESGKTLVADQVIPADWQPDNVYSSIVQF 646
T +G+TL A +VIP +W P Y+S + F
Sbjct: 394 TLTTGRTLSAREVIPRNWTPKATYTSRLNF 483
>gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_I10 3', mRNA sequence
Length = 458
Score = 56.1 bits (116), Expect(3) = 1e-022
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = +2 / -1
Query: 338 VTFHIERGSNPNYLAVLVEYENGDGDVVQVDLMESSPDD 454
VTFH++ GSNP Y A +VEYE+GDG++ V+L ++ D
Sbjct: 458 VTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 342
Score = 44.1 bits (90), Expect(3) = 1e-022
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2 / -1
Query: 563 ESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
ESGKT+VA VIPA W P Y S+V F *
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 156
Score = 44.1 bits (90), Expect(3) = 1e-022
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2 / -1
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTN 562
W PM++SWG++W++D L+ P S+++T+
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIKLTS 249
>gb|CF234058.1|CF234058 PtaJXO2A9A0901 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 694
Score = 62.0 bits (129), Expect(3) = 4e-022
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +2 / +2
Query: 8 VGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIITDM 187
+ GACG+ + S + ++KDG GCG+C+QIRCK CS VI+TD+
Sbjct: 188 LSSGACGYGSMATGFNSGHLAAAVSSLYKDGSGCGACFQIRCKDTTLCSREGTRVIVTDL 367
Query: 188 N 190
N
Sbjct: 368 N 370
Score = 47.8 bits (98), Expect(3) = 4e-022
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2 / +2
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGS 364
F LS AF AMA + + GI+++++KRVPC+Y + +E S
Sbjct: 389 FVLSSRAFMAMANKDSGRNILKQGIVEVEYKRVPCEYKNXNMAVRVEESS 538
Score = 32.7 bits (65), Expect(3) = 4e-022
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2 / +2
Query: 353 ERGSNPNYLAVLVEYENGDGDVVQVD 430
E NPNYLA+ + Y+ G VV +D
Sbjct: 530 ESSKNPNYLAIKLLYQGGQTXVVAID 607
>gb|BU889652.1|BU889652 P023H02 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 705
Score = 54.2 bits (112), Expect(4) = 4e-021
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = +2 / +3
Query: 89 FKDGKGCGSCYQIRCKAHPACSGVAETVIITDMN 190
+KDG GCG+C+QIRCK CS V++TD+N
Sbjct: 159 YKDGAGCGACFQIRCKNTALCSSRGTRVVVTDLN 260
Score = 47.8 bits (98), Expect(4) = 4e-021
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2 / +3
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGS 364
F LS AF AMA ++ GI+D+++KRVPC+Y + +E S
Sbjct: 279 FVLSSRAFMAMANKGMGQDILKHGILDVEYKRVPCEYKNQNLAVRVEESS 428
Score = 30.9 bits (61), Expect(4) = 4e-021
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2 / +3
Query: 353 ERGSNPNYLAVLVEYENGDGDVVQVDL 433
E PNYLA+ + Y+ G +VV +D+
Sbjct: 420 ESSKKPNYLAIKLLYQGGQTEVVAMDV 500
Score = 27.2 bits (53), Expect(4) = 4e-021
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2 / +3
Query: 569 GKTLVADQVIPADWQPDNVYSSIVQ 643
GK + A +V+P DW+ Y S VQ
Sbjct: 621 GKWIWAKKVLPEDWKRGMTYDSGVQ 695
>gb|BU896063.1|BU896063 X034H10 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 721
Score = 51.0 bits (105), Expect(4) = 8e-021
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2 / +2
Query: 95 DGKGCGSCYQIRCKAHPACSGVAETVIITDMN 190
DG GCG+C+QIRCK CS VI+TD+N
Sbjct: 2 DGSGCGACFQIRCKDTTLCSREGTRVIVTDLN 97
Score = 47.3 bits (97), Expect(4) = 8e-021
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2 / +2
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGS 364
F LS AF AMA + + GI+++++KRVPC+Y + +E S
Sbjct: 116 FVLSSRAFMAMANKDSGRNILKQGIVEVEYKRVPCEYKNQNMAVRVEESS 265
Score = 34.1 bits (68), Expect(4) = 8e-021
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2 / +2
Query: 353 ERGSNPNYLAVLVEYENGDGDVVQVD 430
E NPNYLA+ + Y+ G +VV +D
Sbjct: 257 ESSKNPNYLAIKLLYQGGQTEVVAID 334
Score = 26.7 bits (52), Expect(4) = 8e-021
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2 / +2
Query: 569 GKTLVADQVIPADWQPDNVYSSIVQ 643
GK + A V+P DW+ Y S VQ
Sbjct: 458 GKWIWARNVLPEDWKAGMTYDSGVQ 532
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 350,821,859
Number of Sequences: 369679
Number of extensions: 4158359
Number of successful extensions: 35935
Number of sequences better than 1.0e-020: 25
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 12193474580
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)