TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AB021175.2.1
         (1225 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA928544.1|CA928544  MTU6TR.P3.H08 Aspen root cDNA Librar...   143   4e-040

>gb|CA928544.1|CA928544 MTU6TR.P3.H08 Aspen root cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 647

 Score =  143 bits (307), Expect(2) = 4e-040
 Identities = 52/79 (65%), Positives = 61/79 (77%)
 Frame = +1 / +2

                                                                       
Query: 316 PGVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQAL 495
           PG  C DPRF G DG  FYFHGKKDRDFCIV+D+ LHINAHFIG+RN  ++RDFTW+Q+L
Sbjct: 245 PGAVCQDPRFIGGDGITFYFHGKKDRDFCIVADSNLHINAHFIGRRNEKLTRDFTWVQSL 424

                              
Query: 496 GIRFAHHHLYVAAQRTPRW 552
           GI F  H L++ AQ T  W
Sbjct: 425 GILFGTHKLFIGAQNTATW 481




 Score = 42.3 bits (86), Expect(2) = 4e-040
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1 / +2

                                   
Query: 238 TCNARCPHKCLIQCPSCKTFCLCD 309
           TC + CPH+C + C  CK  C CD
Sbjct: 170 TCPSACPHQCEVDCTICKAVCNCD 241



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 335,220,928
Number of Sequences: 369679
Number of extensions: 3506403
Number of successful extensions: 23407
Number of sequences better than 1.0e-020: 1
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 17066304954
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)