TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9232502.2.1
(560 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV273737.1|CV273737 WS01712.B21_A05 PTxD-NR-A-8 Populus ... 102 2e-021
gb|CV270935.1|CV270935 WS0153.B21_F13 PTxN-IB-A-6 Populus t... 101 3e-021
gb|CV275597.1|CV275597 WS0176.B21_P22 PTxD-NR-A-8 Populus t... 101 4e-021
gb|DT516194.1|DT516194 WS02430.B21_K19 PTxD-ICC-N-A-14 Popu... 101 4e-021
gb|DT518365.1|DT518365 WS02436.B21_P03 PTxD-ICC-N-A-14 Popu... 101 4e-021
gb|DT520401.1|DT520401 WS02447.B21_H07 PTxD-ICC-N-A-14 Popu... 101 4e-021
gb|CV257739.1|CV257739 WS0247.B21_I07 PTxD-ICC-N-A-14 Popul... 100 5e-021
gb|CK100433.1|CK100433 C032P12.5pR Populus strain T89 leave... 100 7e-021
>gb|CV273737.1|CV273737 WS01712.B21_A05 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01712_A05 3', mRNA sequence
Length = 871
Score = 102 bits (217), Expect = 2e-021
Identities = 45/93 (48%), Positives = 62/93 (66%)
Frame = -2 / -3
Query: 391 LKDEQFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQI 212
+K QF+ +LL+ T+ QI QL S G+TI APT+ AF+ +KAG LNGL+ QEQ+
Sbjct: 788 VKGGQFATLIRLLNSTQTLNQIENQLNSSSEGMTIFAPTDNAFNNLKAGALNGLNQQEQV 609
Query: 211 QMVLYCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Q++ Y LP+FY++S L +S V TQ SG DG
Sbjct: 608 QLLQYHTLPKFYTMSNLLLVSNPVPTQASGQDG 510
>gb|CV270935.1|CV270935 WS0153.B21_F13 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_F13 3', mRNA sequence
Length = 838
Score = 101 bits (216), Expect = 3e-021
Identities = 45/93 (48%), Positives = 62/93 (66%)
Frame = -2 / -2
Query: 391 LKDEQFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQI 212
+K QF+ +LL+ T+ QI QL S G+TI APT+ AF+ +KAG LNGL+ QEQ+
Sbjct: 702 VKGGQFATLIRLLNKTQTLNQIENQLNSSSEGMTIFAPTDNAFNNLKAGALNGLNQQEQV 523
Query: 211 QMVLYCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Q++ Y LP+FY++S L +S V TQ SG DG
Sbjct: 522 QLLQYHTLPKFYTMSNLLLVSNPVPTQASGQDG 424
>gb|CV275597.1|CV275597 WS0176.B21_P22 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0176_P22 3', mRNA sequence
Length = 847
Score = 101 bits (215), Expect = 4e-021
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = -2 / -2
Query: 391 LKDEQFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQI 212
+K QF F LL+ T+ QI Q+ S G+TI APT+ AF +K+G LNGLS Q+Q+
Sbjct: 777 VKGGQFVTFISLLNKTQTFNQIENQINSSSEGMTIFAPTDNAFSNLKSGALNGLSQQQQV 598
Query: 211 QMVLYCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Q++ Y +LP+FYSLS L +S V TQ SG +G
Sbjct: 597 QLLQYHMLPKFYSLSNLLLVSNPVPTQASGQEG 499
>gb|DT516194.1|DT516194 WS02430.B21_K19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_K19 3', mRNA sequence
Length = 915
Score = 101 bits (215), Expect = 4e-021
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = -2 / -2
Query: 391 LKDEQFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQI 212
+K QF F LL+ T+ QI Q+ S G+TI APT+ AF +K+G LNGLS Q+Q+
Sbjct: 776 VKGGQFVTFISLLNKTQTFNQIENQINSSSEGMTIFAPTDNAFSNLKSGALNGLSQQQQV 597
Query: 211 QMVLYCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Q++ Y +LP+FYSLS L +S V TQ SG +G
Sbjct: 596 QLLQYHMLPKFYSLSNLLLVSNPVPTQASGQEG 498
>gb|DT518365.1|DT518365 WS02436.B21_P03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_P03 3', mRNA sequence
Length = 907
Score = 101 bits (215), Expect = 4e-021
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = -2 / -1
Query: 391 LKDEQFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQI 212
+K QF F LL+ T+ QI Q+ S G+TI APT+ AF +K+G LNGLS Q+Q+
Sbjct: 775 VKGGQFVTFISLLNKTQTFNQIENQINSSSEGMTIFAPTDNAFSNLKSGALNGLSQQQQV 596
Query: 211 QMVLYCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Q++ Y +LP+FYSLS L +S V TQ SG +G
Sbjct: 595 QLLQYHMLPKFYSLSNLLLVSNPVPTQASGQEG 497
>gb|DT520401.1|DT520401 WS02447.B21_H07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_H07 3', mRNA sequence
Length = 877
Score = 101 bits (215), Expect = 4e-021
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = -2 / -2
Query: 391 LKDEQFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQI 212
+K QF F LL+ T+ QI Q+ S G+TI APT+ AF +K+G LNGLS Q+Q+
Sbjct: 777 VKGGQFVTFISLLNKTQTFNQIENQINSSSEGMTIFAPTDNAFSNLKSGALNGLSQQQQV 598
Query: 211 QMVLYCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Q++ Y +LP+FYSLS L +S V TQ SG +G
Sbjct: 597 QLLQYHMLPKFYSLSNLLLVSNPVPTQASGQEG 499
>gb|CV257739.1|CV257739 WS0247.B21_I07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_I07 3', mRNA sequence
Length = 774
Score = 100 bits (214), Expect = 5e-021
Identities = 45/92 (48%), Positives = 60/92 (65%)
Frame = -2 / -3
Query: 388 KDEQFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQIQ 209
K QF F LL+ T+ QI Q+ S G+TI APT+ AF +K+G LNGLS Q+Q+Q
Sbjct: 772 KGGQFVTFISLLNKTQTFNQIENQINSSSEGMTIFAPTDNAFSNLKSGALNGLSQQQQVQ 593
Query: 208 MVLYCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
++ Y +LP+FYSLS L +S V TQ SG +G
Sbjct: 592 LLQYHMLPKFYSLSNLLLVSNPVPTQASGQEG 497
>gb|CK100433.1|CK100433 C032P12.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C032P12 5', mRNA sequence
Length = 442
Score = 100 bits (213), Expect = 7e-021
Identities = 45/93 (48%), Positives = 61/93 (65%)
Frame = -2 / +1
Query: 391 LKDEQFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQI 212
+K QF+ LL+ T+ QI QL S G+TI APT+ AF+ +KAG LNGLS QEQ+
Sbjct: 127 VKGGQFATLIGLLNKTQTLNQIENQLNSSSEGMTIFAPTDNAFNNLKAGALNGLSQQEQV 306
Query: 211 QMVLYCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Q++ Y LP+FY+++ L +S V TQ SG DG
Sbjct: 307 QLLQYHTLPKFYTMNNLLLVSNPVPTQASGQDG 405
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 143,725,142
Number of Sequences: 369679
Number of extensions: 1450949
Number of successful extensions: 29213
Number of sequences better than 1.0e-020: 8
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6608149965
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)