TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV257156.1|CV257156 WS0245.B21_N09 PTxD-ICC-N-A-14 Popul... 101 6e-021
gb|CV270256.1|CV270256 WS0151.B21_I04 PTxN-IB-A-6 Populus t... 101 6e-021
gb|DT474409.1|DT474409 WS01231.BR_N01 PT-GT-FL-A-3 Populus ... 101 6e-021
gb|DT477057.1|DT477057 WS01231.B21_N01 PT-GT-FL-A-3 Populus... 101 6e-021
gb|CV237221.1|CV237221 WS01226.B21_O21 PT-GT-FL-A-3 Populus... 98 5e-020
gb|DT472633.1|DT472633 WS01226.BR_O21 PT-GT-FL-A-3 Populus ... 98 5e-020
gb|CV275964.1|CV275964 WS0178.B21.1_D06 PTxD-NR-A-8 Populus... 79 2e-014
gb|CA821353.1|CA821353 RSH01G09 two-month-old roots from cl... 32 5.4
gb|CA824665.1|CA824665 R46C10 two-month-old roots from clon... 32 5.4
gb|CA824953.1|CA824953 R50H08 two-month-old roots from clon... 32 5.4
gb|CA825401.1|CA825401 R58C09 two-month-old roots from clon... 32 5.4
gb|CA825893.1|CA825893 R69C08 two-month-old roots from clon... 32 5.4
gb|CA826085.1|CA826085 R72C10 two-month-old roots from clon... 32 5.4
gb|CF936133.1|CF936133 PO3002D02 Populus tomentiglandulosa ... 32 5.4
gb|CF936408.1|CF936408 PO3005F05 Populus tomentiglandulosa ... 32 5.4
gb|BU866138.1|BU866138 S063B03 Populus imbibed seed cDNA li... 31 7.4
gb|CV237288.1|CV237288 WS01227.B21.1_E04 PT-GT-FL-A-3 Popul... 31 7.4
gb|DT472684.1|DT472684 WS01227.BR.1_E04 PT-GT-FL-A-3 Populu... 31 7.4
gb|DT474766.1|DT474766 WS0124.BR_O20 PT-GT-FL-A-3 Populus t... 31 7.4
gb|DT475079.1|DT475079 WS0125.BR_P02 PT-GT-FL-A-3 Populus t... 31 7.4
>gb|CV257156.1|CV257156 WS0245.B21_N09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_N09 3', mRNA sequence
Length = 698
Score = 101 bits (215), Expect = 6e-021
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = -1 / -2
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I L+S+L+ LLP R+R + S +K+L+ETC+YIK+LHREVDDLS+RLS L+A++D +
Sbjct: 514 IIHLVSKLRQLLPEIRQRRSDKVSASKVLQETCNYIKNLHREVDDLSERLSQLLATIDSD 335
Query: 534 SPGAEIIRSLL 502
SP AEIIRSL+
Sbjct: 334 SPEAEIIRSLI 302
>gb|CV270256.1|CV270256 WS0151.B21_I04 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_I04 3', mRNA sequence
Length = 771
Score = 101 bits (215), Expect = 6e-021
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = -1 / -2
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I L+S+L+ LLP R+R + S +K+L+ETC+YIK+LHREVDDLS+RLS L+A++D +
Sbjct: 422 IIHLVSKLRQLLPEIRQRRSDKVSASKVLQETCNYIKNLHREVDDLSERLSQLLATIDSD 243
Query: 534 SPGAEIIRSLL 502
SP AEIIRSL+
Sbjct: 242 SPEAEIIRSLI 210
>gb|DT474409.1|DT474409 WS01231.BR_N01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_N01 5', mRNA sequence
Length = 717
Score = 101 bits (215), Expect = 6e-021
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I L+S+L+ LLP R+R + S +K+L+ETC+YIK+LHREVDDLS+RLS L+A++D +
Sbjct: 409 IIHLVSKLRQLLPEIRQRRSDKVSASKVLQETCNYIKNLHREVDDLSERLSQLLATIDSD 588
Query: 534 SPGAEIIRSLL 502
SP AEIIRSL+
Sbjct: 589 SPEAEIIRSLI 621
>gb|DT477057.1|DT477057 WS01231.B21_N01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_N01 3', mRNA sequence
Length = 672
Score = 101 bits (215), Expect = 6e-021
Identities = 42/71 (59%), Positives = 58/71 (81%)
Frame = -1 / -1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I L+S+L+ LLP R+R + S +K+L+ETC+YIK+LHREVDDLS+RLS L+A++D +
Sbjct: 309 IIHLVSKLRQLLPEIRQRRSDKVSASKVLQETCNYIKNLHREVDDLSERLSQLLATIDSD 130
Query: 534 SPGAEIIRSLL 502
SP AEIIRSL+
Sbjct: 129 SPEAEIIRSLI 97
>gb|CV237221.1|CV237221 WS01226.B21_O21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_O21 3', mRNA sequence
Length = 717
Score = 98.2 bits (208), Expect = 5e-020
Identities = 42/81 (51%), Positives = 63/81 (77%)
Frame = -1 / -3
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I +L+S+L+ LLP +R + S +K+L+ETC+YI++LHREVDDLS+RLS L+A++D +
Sbjct: 445 IIDLVSKLRQLLPEISQRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLATIDAD 266
Query: 534 SPGAEIIRSLLR*PKSVRPAG 472
SP A IIRSL+ * + +R +G
Sbjct: 265 SPEAAIIRSLIM*YQLIR*SG 203
>gb|DT472633.1|DT472633 WS01226.BR_O21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01226_O21 5', mRNA sequence
Length = 689
Score = 98.2 bits (208), Expect = 5e-020
Identities = 42/81 (51%), Positives = 63/81 (77%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I +L+S+L+ LLP +R + S +K+L+ETC+YI++LHREVDDLS+RLS L+A++D +
Sbjct: 244 IIDLVSKLRQLLPEISQRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLATIDAD 423
Query: 534 SPGAEIIRSLLR*PKSVRPAG 472
SP A IIRSL+ * + +R +G
Sbjct: 424 SPEAAIIRSLIM*YQLIR*SG 486
>gb|CV275964.1|CV275964 WS0178.B21.1_D06 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0178_D06 3', mRNA sequence
Length = 782
Score = 79.4 bits (167), Expect = 2e-014
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = -1 / -2
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
I +L+++LQ LLP R R + S K+L+ETC+YIKSLHREV DLS+RLS+L+ + D
Sbjct: 433 ILDLVTKLQQLLPEIRNRRSDKVSAAKILQETCNYIKSLHREVGDLSERLSELLETTD 260
>gb|CA821353.1|CA821353 RSH01G09 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 601
Score = 31.8 bits (63), Expect = 5.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2 / -2
Query: 449 AASARALSLSIHGRRPASRHRQISAHCRVCVCTHAYS 339
A A +S+++ +P+ I +HCR C +H+Y+
Sbjct: 198 AKPAMIVSVAVLSEKPSQGTYHICSHCRTCSQSHSYN 88
>gb|CA824665.1|CA824665 R46C10 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 592
Score = 31.8 bits (63), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -3
Query: 410 RRPASRHRQISAHCRVCVCTHAYSS*IYPRTT 315
R P+ +I +HCR C +H+Y+ I+ R T
Sbjct: 170 RNPSQGTCRICSHCRTCSQSHSYNQXIFFRKT 75
>gb|CA824953.1|CA824953 R50H08 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 579
Score = 31.8 bits (63), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -2
Query: 410 RRPASRHRQISAHCRVCVCTHAYSS*IYPRTT 315
R P+ +I +HCR C +H+Y+ I+ R T
Sbjct: 164 RNPSQGTCRICSHCRTCSQSHSYNQHIFFRKT 69
>gb|CA825401.1|CA825401 R58C09 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 547
Score = 31.8 bits (63), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -2
Query: 410 RRPASRHRQISAHCRVCVCTHAYSS*IYPRTT 315
R P+ +I +HCR C +H+Y+ I+ R T
Sbjct: 162 RNPSQGTCRICSHCRTCSQSHSYNQXIFFRKT 67
>gb|CA825893.1|CA825893 R69C08 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 576
Score = 31.8 bits (63), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -2
Query: 410 RRPASRHRQISAHCRVCVCTHAYSS*IYPRTT 315
R P+ +I +HCR C +H+Y+ I+ R T
Sbjct: 170 RNPSQGTCRICSHCRTCSQSHSYNQHIFFRKT 75
>gb|CA826085.1|CA826085 R72C10 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 581
Score = 31.8 bits (63), Expect = 5.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2 / -1
Query: 410 RRPASRHRQISAHCRVCVCTHAYSS*IYPRTT 315
R P+ I +HCR C +H+Y+ I+ R T
Sbjct: 164 RNPSQGTYHICSHCRTCSQSHSYNQHIFFRKT 69
>gb|CF936133.1|CF936133 PO3002D02 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 955
Score = 31.8 bits (63), Expect = 5.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1 / +3
Query: 708 ELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLH 595
E +S L +RRGGS + ++LLK+T S++ SL+
Sbjct: 522 EKMSCLMMARKQEKRRGGSIWNKSRLLKKTLSWVTSLN 635
>gb|CF936408.1|CF936408 PO3005F05 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1124
Score = 31.8 bits (63), Expect = 5.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1 / +3
Query: 708 ELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLH 595
E +S L +RRGGS + ++LLK+T S++ SL+
Sbjct: 522 EKMSCLMMARKQEKRRGGSIWNKSRLLKKTLSWVTSLN 635
>gb|BU866138.1|BU866138 S063B03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 671
Score = 31.3 bits (62), Expect = 7.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1 / +1
Query: 708 ELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLH 595
E +S L +RRGGS + ++LLK+T S++ SL+
Sbjct: 532 EKMSCLMMAHKQEKRRGGSIWNKSRLLKKTLSWVTSLN 645
>gb|CV237288.1|CV237288 WS01227.B21.1_E04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_E04 3', mRNA sequence
Length = 856
Score = 31.3 bits (62), Expect = 7.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1 / -1
Query: 708 ELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLH 595
E +S L +RRGGS + ++LLK+T S++ SL+
Sbjct: 799 EKMSCLMMAHKQEKRRGGSIWNKSRLLKKTLSWVTSLN 686
>gb|DT472684.1|DT472684 WS01227.BR.1_E04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_E04 5', mRNA sequence
Length = 853
Score = 31.3 bits (62), Expect = 7.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1 / +2
Query: 708 ELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLH 595
E +S L +RRGGS + ++LLK+T S++ SL+
Sbjct: 332 EKMSCLMMAHKQEKRRGGSIWNKSRLLKKTLSWVTSLN 445
>gb|DT474766.1|DT474766 WS0124.BR_O20 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0124_O20 5', mRNA sequence
Length = 667
Score = 31.3 bits (62), Expect = 7.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1 / +1
Query: 708 ELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLH 595
E +S L +RRGGS + ++LLK+T S++ SL+
Sbjct: 325 EKMSCLMMAHKQEKRRGGSIWNKSRLLKKTLSWVTSLN 438
>gb|DT475079.1|DT475079 WS0125.BR_P02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_P02 5', mRNA sequence
Length = 642
Score = 31.3 bits (62), Expect = 7.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1 / +1
Query: 708 ELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLH 595
E +S L +RRGGS + ++LLK+T S++ SL+
Sbjct: 325 EKMSCLMMAHKQEKRRGGSIWNKSRLLKKTLSWVTSLN 438
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 248,082,785
Number of Sequences: 369679
Number of extensions: 2704783
Number of successful extensions: 27032
Number of sequences better than 10.0: 26
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9910234320
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)