TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228841.2.1
(621 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV258719.1|CV258719 WS0201.B21_F08 PTxN-IB-N-A-11 Populu... 109 3e-036
gb|CX654220.1|CX654220 PO02015A05 Poplar SC cDNA library Po... 95 7e-034
gb|CV276879.1|CV276879 WS0142.B21_A18 PTxD-IL-A-5 Populus t... 106 8e-033
gb|DT514016.1|DT514016 WS02423.B21_K04 PTxD-ICC-N-A-14 Popu... 106 8e-033
gb|CV276936.1|CV276936 WS0142.B21_D09 PTxD-IL-A-5 Populus t... 106 8e-033
gb|CK090495.1|CK090495 F008P84.3pR Populus flower cDNA libr... 106 8e-033
gb|CV271153.1|CV271153 WS0153.B21_O23 PTxN-IB-A-6 Populus t... 105 1e-032
gb|CV130609.1|CV130609 B9SP06h03 Populus stem seasonal libr... 105 1e-032
gb|CV273187.1|CV273187 WS0171.B21_P05 PTxD-NR-A-8 Populus t... 109 3e-031
gb|DN485248.1|DN485248 M122A11.3pR Populus female catkins c... 83 4e-027
gb|BU835778.1|BU835778 T078E10 Populus apical shoot cDNA li... 112 4e-027
gb|BP932598.1|BP932598 BP932598 full-length enriched poplar... 110 2e-026
gb|CK090371.1|CK090371 C092P56.3pR Populus strain T89 leave... 110 3e-026
gb|BU816643.1|BU816643 N069F11 Populus bark cDNA library Po... 107 1e-025
gb|CA927840.1|CA927840 MTU6TR.P13.E11 Aspen root cDNA Libra... 95 3e-025
gb|BU880315.1|BU880315 UM44TC09 Populus flower cDNA library... 87 5e-025
gb|DN488992.1|DN488992 S066G12.3pR Populus imbibed seed cDN... 75 7e-025
gb|BU888888.1|BU888888 P013G12 Populus petioles cDNA librar... 84 4e-024
gb|DT522014.1|DT522014 WS02035.B21_N05 PTxN-IB-N-A-11 Popul... 87 7e-024
gb|BP933409.1|BP933409 BP933409 full-length enriched poplar... 110 1e-023
gb|CN520293.1|CN520293 GQ0108.B3_O18 GQ010 Populus trichoca... 66 1e-022
gb|DN488210.1|DN488210 R041F03.3pR Populus root cDNA librar... 80 1e-022
gb|BI128960.1|BI128960 G084P08Y Populus cambium cDNA librar... 86 3e-022
gb|CK097608.1|CK097608 UB56BPD10.3pR Populus active cambium... 104 5e-022
gb|CK107403.1|CK107403 UB56BPD10.5pR Populus active cambium... 104 5e-022
gb|CV261973.1|CV261973 WS02018.B21_E17 PTxN-IB-N-A-11 Popul... 87 6e-022
gb|CV271536.1|CV271536 WS0154.B21_P15 PTxN-IB-A-6 Populus t... 87 6e-022
gb|CX174097.1|CX174097 D08_69-100_08.ab1 leaf inoculated wi... 85 3e-021
gb|BU823778.1|BU823778 UB56BPD10 Populus tremula cambium cD... 100 6e-021
>gb|CV258719.1|CV258719 WS0201.B21_F08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0201_F08 3', mRNA sequence
Length = 879
Score = 109 bits (233), Expect(2) = 3e-036
Identities = 41/80 (51%), Positives = 57/80 (71%)
Frame = +3 / -1
Query: 141 LPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYV 320
L +K LND +R+DY + H+S L+ A+ G V+G+F WS LD+FEW++GYT R+GI+Y+
Sbjct: 498 LTLKQQLNDTMRIDYYRSHLSFLRLAMAEGVKVKGYFAWSFLDDFEWNSGYTVRFGIIYI 319
Query: 321 DRGNGCKRRMKRSAKWLKKF 380
D NG KR K SA+W K F
Sbjct: 318 DYKNGLKRIPKLSARWFKNF 259
Score = 62.0 bits (129), Expect(2) = 3e-036
Identities = 18/43 (41%), Positives = 33/43 (76%)
Frame = +3 / -1
Query: 9 GNPWIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDK 137
G+ W+++YP G++ +L++ K KY +P +YITENG+ +V+ + K
Sbjct: 627 GSTWLHVYPKGIRKLLLYTKKKYNDPVIYITENGVSEVNNEGK 499
>gb|CX654220.1|CX654220 PO02015A05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02015A05 5', mRNA sequence
Length = 614
Score = 95.5 bits (202), Expect(2) = 7e-034
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +3 / -2
Query: 144 PIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
P+ AL D R+ Y H+S L AI GA+V+ ++ WS LD+FEW AGYT R+G+ YVD
Sbjct: 385 PLAFALKDSWRIRYHSAHLSYLLKAIQKGANVKAYYIWSFLDDFEWDAGYTVRFGVTYVD 206
Query: 324 RGNGCKRRMKRSAKWLK 374
N KR +K SA+W +
Sbjct: 205 FKNNLKRYLKSSARWFQ 155
Score = 68.4 bits (143), Expect(2) = 7e-034
Identities = 22/47 (46%), Positives = 36/47 (76%)
Frame = +3 / -2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPLPIKDA 158
W+Y+YP G++D+L++IK+ Y NPPV+ITENGI + ++ +KD+
Sbjct: 499 WLYVYPRGIQDVLLYIKDNYKNPPVFITENGIAENASRPLAFALKDS 359
>gb|CV276879.1|CV276879 WS0142.B21_A18 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_A18 3', mRNA sequence
Length = 916
Score = 106 bits (226), Expect(2) = 8e-033
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +3 / -2
Query: 120 VDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTE 299
+D +D P+ + L+D++R+ Y + +++ + AI G V+G+F WSLLDNFEW+ GYT+
Sbjct: 612 MDDEDIDAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTK 433
Query: 300 RYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTK 401
R+G+VYVD NG R K SA W +F + K
Sbjct: 432 RFGLVYVDYKNGLSRHPKSSAYWFMRFLKGVEGK 331
Score = 53.8 bits (111), Expect(2) = 8e-033
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3 / -2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
W+Y+ P GL+ +L ++ KY NP +Y+TENG+ D D
Sbjct: 705 WLYVCPWGLRKVLNYLAQKYNNPTIYVTENGMDDED 598
>gb|DT514016.1|DT514016 WS02423.B21_K04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_K04 3', mRNA sequence
Length = 910
Score = 106 bits (226), Expect(2) = 8e-033
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +3 / -3
Query: 120 VDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTE 299
+D +D P+ + L+D++R+ Y + +++ + AI G V+G+F WSLLDNFEW+ GYT+
Sbjct: 443 MDDEDIDAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTK 264
Query: 300 RYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTK 401
R+G+VYVD NG R K SA W +F + K
Sbjct: 263 RFGLVYVDYKNGLSRHPKSSAYWFMRFLKGVEGK 162
Score = 53.8 bits (111), Expect(2) = 8e-033
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
W+Y+ P GL+ +L ++ KY NP +Y+TENG+ D D
Sbjct: 536 WLYVCPWGLRKVLNYLAQKYNNPTIYVTENGMDDED 429
>gb|CV276936.1|CV276936 WS0142.B21_D09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_D09 3', mRNA sequence
Length = 885
Score = 106 bits (226), Expect(2) = 8e-033
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +3 / -3
Query: 120 VDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTE 299
+D +D P+ + L+D++R+ Y + +++ + AI G V+G+F WSLLDNFEW+ GYT+
Sbjct: 589 MDDEDIDAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTK 410
Query: 300 RYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTK 401
R+G+VYVD NG R K SA W +F + K
Sbjct: 409 RFGLVYVDYKNGLSRHPKSSAYWFMRFLKGVEGK 308
Score = 53.8 bits (111), Expect(2) = 8e-033
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
W+Y+ P GL+ +L ++ KY NP +Y+TENG+ D D
Sbjct: 682 WLYVCPWGLRKVLNYLAQKYNNPTIYVTENGMDDED 575
>gb|CK090495.1|CK090495 F008P84.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F008P84 3', mRNA sequence
Length = 793
Score = 106 bits (226), Expect(2) = 8e-033
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +3 / -2
Query: 120 VDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTE 299
+D +D P+ + L+D++R+ Y + +++ + AI G V+G+F WSLLDNFEW+ GYT+
Sbjct: 537 MDDEDIDAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTK 358
Query: 300 RYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTK 401
R+G+VYVD NG R K SA W +F + K
Sbjct: 357 RFGLVYVDYKNGLSRHPKSSAYWFMRFLKGVEGK 256
Score = 53.8 bits (111), Expect(2) = 8e-033
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3 / -2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
W+Y+ P GL+ +L ++ KY NP +Y+TENG+ D D
Sbjct: 630 WLYVCPWGLRKVLNYLAQKYNNPTIYVTENGMDDED 523
>gb|CV271153.1|CV271153 WS0153.B21_O23 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_O23 3', mRNA sequence
Length = 914
Score = 105 bits (225), Expect(2) = 1e-032
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +3 / -1
Query: 120 VDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTE 299
+D +D P+ + L+D++R+ Y + +++ + AI G V+G+F WSLLDNFEW+ GYT+
Sbjct: 557 MDDEDIDAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTK 378
Query: 300 RYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTK 401
R+G+VYVD NG R K SA W +F + K
Sbjct: 377 RFGLVYVDYKNGLARHPKSSAYWFMRFLKGVEGK 276
Score = 53.8 bits (111), Expect(2) = 1e-032
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
W+Y+ P GL+ +L ++ KY NP +Y+TENG+ D D
Sbjct: 650 WLYVCPWGLRKVLNYLAQKYNNPTIYVTENGMDDED 543
>gb|CV130609.1|CV130609 B9SP06h03 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 742
Score = 105 bits (225), Expect(2) = 1e-032
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +3 / +2
Query: 120 VDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTE 299
+D +D P+ + L+D++R+ Y + +++ + AI G V+G+F WSLLDNFEW+ GYT+
Sbjct: 239 MDDEDIDAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTK 418
Query: 300 RYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTK 401
R+G+VYVD NG R K SA W +F + K
Sbjct: 419 RFGLVYVDYKNGLARHPKSSAYWFMRFLKGVEGK 520
Score = 53.8 bits (111), Expect(2) = 1e-032
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
W+Y+ P GL+ +L ++ KY NP +Y+TENG+ D D
Sbjct: 146 WLYVCPWGLRKVLNYLARKYNNPTIYVTENGMDDED 253
>gb|CV273187.1|CV273187 WS0171.B21_P05 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_P05 3', mRNA sequence
Length = 600
Score = 109 bits (233), Expect(2) = 3e-031
Identities = 41/80 (51%), Positives = 57/80 (71%)
Frame = +3 / -2
Query: 141 LPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYV 320
L +K LND +R+DY + H+S L+ A+ G V+G+F WS LD+FEW++GYT R+GI+Y+
Sbjct: 476 LTLKQQLNDTMRIDYYRSHLSFLRLAMAEGVKVKGYFAWSFLDDFEWNSGYTVRFGIIYI 297
Query: 321 DRGNGCKRRMKRSAKWLKKF 380
D NG KR K SA+W K F
Sbjct: 296 DYKNGLKRIPKLSARWFKNF 237
Score = 45.5 bits (93), Expect(2) = 3e-031
Identities = 14/33 (42%), Positives = 25/33 (75%)
Frame = +3 / -2
Query: 39 GLKDILMFIKNKYGNPPVYITENGIGDVDTKDK 137
G++ +L++ K KY +P +YITENG+ +V+ + K
Sbjct: 575 GIRKLLLYTKRKYNDPVIYITENGVSEVNNEGK 477
>gb|DN485248.1|DN485248 M122A11.3pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M122A11 3', mRNA sequence
Length = 821
Score = 83.1 bits (175), Expect(2) = 4e-027
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +3 / -1
Query: 201 SVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
+VL+ D G DV+G F WS LD+FEW +GY R+G+ Y+D N KR K S KW K+F
Sbjct: 614 NVLRSINDHGVDVKGFFAWSFLDDFEWGSGYGSRFGLFYIDYENNLKRYAKNSVKWFKQF 435
Score = 57.9 bits (120), Expect(2) = 4e-027
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +3 / -1
Query: 33 PNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPLPIKDALNDHVRLDYLQRHISVLK 212
P G++ +L +IK+ Y NPP+YITENG+ DV++ + DA+ + D + +
Sbjct: 773 PEGIRHLLNYIKDAYENPPIYITENGVDDVNSSSLEEALNDAIREQYYKDIFHNVLRSIN 594
Query: 213 D 215
D
Sbjct: 593 D 591
>gb|BU835778.1|BU835778 T078E10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 522
Score = 112 bits (240), Expect(2) = 4e-027
Identities = 43/89 (48%), Positives = 60/89 (67%)
Frame = +3 / +3
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + LP+K+AL D +R+ YL H+ L AI+ GA+V+G++ W+L D+FEW AGY
Sbjct: 51 GLADANNASLPVKEALKDGLRIRYLASHLQYLSKAINEGANVKGYYQWALWDDFEWDAGY 230
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
T R+G++Y+D N KR MK SA W K F
Sbjct: 231 TVRFGMIYIDFKNNLKRYMKYSAYWFKMF 317
Score = 28.1 bits (55), Expect(2) = 4e-027
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 59 VHKEQIRKPTGLHH*EWNRGC 121
V K Q+++P+ LH+*EW+ C
Sbjct: 2 VCKGQVQEPSDLHY*EWSC*C 64
>gb|BP932598.1|BP932598 BP932598 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-038_A02.r 3', mRNA sequence
Length = 644
Score = 110 bits (234), Expect(2) = 2e-026
Identities = 42/89 (47%), Positives = 58/89 (65%)
Frame = +3 / -2
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + LP+K+AL D +R+ YL H+ L AI GA+V+G++ W+ D+FEW AGY
Sbjct: 523 GLADANNASLPVKEALKDGLRIRYLASHLQYLSKAIKEGANVKGYYQWAFWDDFEWDAGY 344
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
T R+G++Y+D N KR MK SA W K F
Sbjct: 343 TVRFGMIYIDFKNNLKRYMKYSAYWFKMF 257
Score = 28.6 bits (56), Expect(2) = 2e-026
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2 / -1
Query: 59 VHKEQIRKPTGLHH*EWNRGC 121
V K Q+++P+ LH+*EW+ C
Sbjct: 572 VCKGQVQEPSALHY*EWSC*C 510
>gb|CK090371.1|CK090371 C092P56.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C092P56 3', mRNA sequence
Length = 543
Score = 110 bits (234), Expect(2) = 3e-026
Identities = 42/89 (47%), Positives = 58/89 (65%)
Frame = +3 / -1
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + LP+K+AL D +R+ YL H+ L AI GA+V+G++ W+ D+FEW AGY
Sbjct: 438 GLADANNASLPVKEALKDGLRIRYLASHLQYLSKAIKEGANVKGYYQWAFWDDFEWDAGY 259
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
T R+G++Y+D N KR MK SA W K F
Sbjct: 258 TVRFGMIYIDFKNNLKRYMKYSAYWFKMF 172
Score = 28.1 bits (55), Expect(2) = 3e-026
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2 / -3
Query: 59 VHKEQIRKPTGLHH*EWNRGC 121
V K Q+++P+ LH+*EW+ C
Sbjct: 487 VCKGQVQEPSDLHY*EWSC*C 425
>gb|BU816643.1|BU816643 N069F11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 668
Score = 107 bits (228), Expect(2) = 1e-025
Identities = 41/94 (43%), Positives = 61/94 (64%)
Frame = +3 / +3
Query: 120 VDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTE 299
+D +D P+ + L+D++R+ Y + +++ L AI G V+G+F WSLLDNFEW+ GYT+
Sbjct: 105 MDDEDIDAPLHEVLDDNLRVRYFKGYLASLAQAIKDGVQVKGYFAWSLLDNFEWAQGYTK 284
Query: 300 RYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTK 401
R+G+VYVD NG R K SA W +F + K
Sbjct: 285 RFGLVYVDYKNGLSRHPKSSAYWFLRFLKGVEGK 386
Score = 29.0 bits (57), Expect(2) = 1e-025
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3 / +3
Query: 81 NPPVYITENGIGDVD 125
NP +Y+TENG+ D D
Sbjct: 75 NPTIYVTENGMDDED 119
>gb|CA927840.1|CA927840 MTU6TR.P13.E11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 407
Score = 95.5 bits (202), Expect(2) = 3e-025
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +3 / -1
Query: 144 PIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
P+ AL D R+ Y H+S L AI GA+V+ ++ WS LD+FEW AGYT R+G+ YVD
Sbjct: 338 PLAYALKDSWRIRYHSAHLSYLLKAIQKGANVKAYYIWSFLDDFEWDAGYTVRFGVTYVD 159
Query: 324 RGNGCKRRMKRSAKWLK 374
N KR +K SA+W +
Sbjct: 158 FKNNLKRYLKSSARWFQ 108
Score = 39.6 bits (80), Expect(2) = 3e-025
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3 / -1
Query: 63 IKNKYGNPPVYITENGIGDVDTKDKPLPIKDA 158
IK+ Y NPPV+ITENGI + ++ +KD+
Sbjct: 407 IKDNYKNPPVFITENGIAENASRPLAYALKDS 312
>gb|BU880315.1|BU880315 UM44TC09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 617
Score = 86.8 bits (183), Expect(2) = 5e-025
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +3 / +3
Query: 156 ALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGN 332
AL+D R+ Y + +++ LK A D GA++ G+F WSLLDNFEW +GYT R+GIVYVD N
Sbjct: 351 ALHDTTRVGYFKAYLTQLKKAADEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDYTN 527
Score = 47.3 bits (97), Expect(2) = 5e-025
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGD 119
W+Y P G+ +M+IK +YGNP + ++ENG+ D
Sbjct: 225 WLYNVPWGMYKAVMYIKERYGNPTIILSENGMDD 326
>gb|DN488992.1|DN488992 S066G12.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S066G12 3', mRNA sequence
Length = 824
Score = 75.3 bits (158), Expect(2) = 7e-025
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = +3 / -3
Query: 234 DVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTKKKDM 413
DVRG+F WSLLDN+EW++GYT R+G+ +VD N R K SA+W K R K +
Sbjct: 285 DVRGYFAWSLLDNWEWNSGYTVRFGLYFVDYRNNLTRVPKASAEWFKSTLRLEDNLKSQL 106
Score = 58.3 bits (121), Expect(2) = 7e-025
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = +3 / -3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDT 128
W+++ P G+ +L ++K+KYGNPPV ITENG+ D++T
Sbjct: 498 WLHIVPWGIHKLLKYVKDKYGNPPVVITENGMDDLNT 388
>gb|BU888888.1|BU888888 P013G12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 476
Score = 84.0 bits (177), Expect(2) = 4e-024
Identities = 33/59 (55%), Positives = 43/59 (72%)
Frame = +3 / +1
Query: 156 ALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGN 332
AL D R+ Y + ++S LK A GA++ G+F WSLLDNFEW++GYT R+GIVYVD N
Sbjct: 154 ALQDTTRIGYYKAYLSQLKKAAVDGANLVGYFAWSLLDNFEWTSGYTSRFGIVYVDYSN 330
Score = 46.9 bits (96), Expect(2) = 4e-024
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPLPIKD 155
W+Y P G+ +M+IK +YGNP + ++ENG+ D + ++D
Sbjct: 28 WLYNVPWGMYKAVMYIKERYGNPTMILSENGMDDPGNLTRSKALQD 165
>gb|DT522014.1|DT522014 WS02035.B21_N05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02035_N05 3', mRNA sequence
Length = 894
Score = 87.2 bits (184), Expect(2) = 7e-024
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +3 / -3
Query: 156 ALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGN 332
AL+D R+ Y + +++ LK A D GA++ G+F WSLLDNFEW +GYT R+GIVYVD N
Sbjct: 334 ALHDTTRIGYFKAYLTQLKKAADEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDYTN 158
Score = 45.1 bits (92), Expect(2) = 7e-024
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGI 113
W+Y P G+ +M+IK +YGNP + ++ENG+
Sbjct: 585 WLYNVPWGMYKAVMYIKERYGNPTIILSENGM 490
>gb|BP933409.1|BP933409 BP933409 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-051_A15.r 3', mRNA sequence
Length = 564
Score = 110 bits (234), Expect = 1e-023
Identities = 42/89 (47%), Positives = 58/89 (65%)
Frame = +3 / -2
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + LP+K+AL D +R+ YL H+ L AI GA+V+G++ W+ D+FEW AGY
Sbjct: 521 GLADANNASLPVKEALKDGLRIRYLASHLQYLSKAIKEGANVKGYYQWAFWDDFEWDAGY 342
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
T R+G++Y+D N KR MK SA W K F
Sbjct: 341 TVRFGMIYIDFKNNLKRYMKYSAYWFKMF 255
>gb|CN520293.1|CN520293 GQ0108.B3_O18 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_O18 5', mRNA sequence
Length = 789
Score = 65.7 bits (137), Expect(2) = 1e-022
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +3 / -1
Query: 201 SVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
+VL+ + G V+G+F W+ D+FEW GYT R+G+ Y D + R KRS W F
Sbjct: 477 NVLRSIENYGTIVKGYFAWTFADDFEWPDGYTIRFGLYYTDYLHNLHRYPKRSVHWFTNF 298
Query: 381 NRAAHTKKKDMT 416
+ + K+ ++
Sbjct: 297 LKGSKWNKEPVS 262
Score = 60.6 bits (126), Expect(2) = 1e-022
Identities = 18/36 (50%), Positives = 29/36 (80%)
Frame = +3 / -1
Query: 12 NPWIYMYPNGLKDILMFIKNKYGNPPVYITENGIGD 119
+PW+Y+YP G++ +L + K++Y NP +YITENG+ D
Sbjct: 666 SPWLYVYPKGIRYLLNYTKDRYRNPTIYITENGVSD 559
>gb|DN488210.1|DN488210 R041F03.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R041F03 3', mRNA sequence
Length = 842
Score = 80.3 bits (169), Expect(2) = 1e-022
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +3 / -1
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
I++ L+D R++Y+ ++ L A+ GADVRG+F WS LDNFEW+ GYT R+G+ +VD
Sbjct: 350 IEEFLHDTGRVEYMSGYLDALLTAMKKGADVRGYFAWSFLDNFEWTFGYTRRFGLYHVD 174
Score = 45.5 bits (93), Expect(2) = 1e-022
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3 / -1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKD 134
WI++Y G++ ++ ++K +Y N P+ ITENG V +
Sbjct: 473 WIHVYSRGMEKMVTYVKERYNNIPMIITENGYSQVSNSN 357
>gb|BI128960.1|BI128960 G084P08Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 399
Score = 86.3 bits (182), Expect(2) = 3e-022
Identities = 34/59 (57%), Positives = 42/59 (71%)
Frame = +3 / +3
Query: 156 ALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGN 332
AL D R+ Y + ++S LK A D GA++ G+F WSLLDNFEW GYT R+GIVYVD N
Sbjct: 213 ALQDTTRIGYYKAYLSQLKKAADDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSN 389
Score = 38.2 bits (77), Expect(2) = 3e-022
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITE 104
W+Y P G+ +M+IK +YGNP + ++E
Sbjct: 85 WLYNVPWGMYKAVMYIKERYGNPTMILSE 171
>gb|CK097608.1|CK097608 UB56BPD10.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB56BPD10 3', mRNA sequence
Length = 459
Score = 104 bits (222), Expect = 5e-022
Identities = 41/94 (43%), Positives = 59/94 (62%)
Frame = +3 / -2
Query: 120 VDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTE 299
+D +D P+ + L D++R+ Y + +++ L AI G V+G F WSLLDNFEW+ GYT+
Sbjct: 455 MDDEDIDAPLHEVLGDNLRVRYFKGYLASLAQAIKDGVQVKGCFAWSLLDNFEWAQGYTK 276
Query: 300 RYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTK 401
R+G+VYVD NG R K SA W +F + K
Sbjct: 275 RFGLVYVDYKNGLSRHPKSSAYWFLRFLKGVEGK 174
>gb|CK107403.1|CK107403 UB56BPD10.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB56BPD10 5', mRNA sequence
Length = 473
Score = 104 bits (222), Expect = 5e-022
Identities = 41/94 (43%), Positives = 59/94 (62%)
Frame = +3 / +1
Query: 120 VDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTE 299
+D +D P+ + L D++R+ Y + +++ L AI G V+G F WSLLDNFEW+ GYT+
Sbjct: 16 MDDEDIDAPLHEVLGDNLRVRYFKGYLASLAQAIKDGVQVKGCFAWSLLDNFEWAQGYTK 195
Query: 300 RYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHTK 401
R+G+VYVD NG R K SA W +F + K
Sbjct: 196 RFGLVYVDYKNGLSRHPKSSAYWFLRFLKGVEGK 297
>gb|CV261973.1|CV261973 WS02018.B21_E17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_E17 3', mRNA sequence
Length = 832
Score = 87.2 bits (184), Expect(2) = 6e-022
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +3 / -3
Query: 156 ALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGN 332
AL+D R+ Y + +++ LK A D GA++ G+F WSLLDNFEW +GYT R+GIVYVD N
Sbjct: 731 ALHDTTRIGYFKAYLTQLKKAADEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDYTN 555
Score = 36.3 bits (73), Expect(2) = 6e-022
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3 / -3
Query: 54 LMFIKNKYGNPPVYITENGIGD 119
+M+IK +YGNP + ++ENG+ D
Sbjct: 821 VMYIKERYGNPTIILSENGMDD 756
>gb|CV271536.1|CV271536 WS0154.B21_P15 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_P15 3', mRNA sequence
Length = 479
Score = 87.2 bits (184), Expect(2) = 6e-022
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +3 / -2
Query: 156 ALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGN 332
AL+D R+ Y + +++ LK A D GA++ G+F WSLLDNFEW +GYT R+GIVYVD N
Sbjct: 379 ALHDTTRIGYFKAYLTQLKKAADEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDYTN 203
Score = 36.3 bits (73), Expect(2) = 6e-022
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3 / -2
Query: 54 LMFIKNKYGNPPVYITENGIGD 119
+M+IK +YGNP + ++ENG+ D
Sbjct: 469 VMYIKERYGNPTIILSENGMDD 404
>gb|CX174097.1|CX174097 D08_69-100_08.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 443
Score = 85.4 bits (180), Expect(2) = 3e-021
Identities = 33/59 (55%), Positives = 42/59 (71%)
Frame = +3 / +3
Query: 156 ALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGN 332
A+ D R+ Y + ++S LK A D GA++ G+F WSLLDNFEW GYT R+GIVYVD N
Sbjct: 102 AMQDTTRIGYYKAYLSQLKKAADDGANMVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSN 278
Score = 35.9 bits (72), Expect(2) = 3e-021
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3 / +3
Query: 48 DILMFIKNKYGNPPVYITENGIGD 119
+ +M+IK +YGNP + ++ENG+ D
Sbjct: 6 EAVMYIKERYGNPTMILSENGMDD 77
>gb|BU823778.1|BU823778 UB56BPD10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 421
Score = 100 bits (214), Expect = 6e-021
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +3 / +3
Query: 144 PIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
P+ + L D++R+ Y + +++ L AI G V+G F WSLLDNFEW+ GYT+R+G+VYVD
Sbjct: 27 PLHEVLGDNLRVRYFKGYLASLAQAIKDGVQVKGCFAWSLLDNFEWAQGYTKRFGLVYVD 206
Query: 324 RGNGCKRRMKRSAKWLKKFNRAAHTK 401
NG R K SA W +F + K
Sbjct: 207 YKNGLSRHPKSSAYWFLRFLKGVEGK 284
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 329,598,410
Number of Sequences: 369679
Number of extensions: 4758294
Number of successful extensions: 55846
Number of sequences better than 1.0e-020: 31
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7587135145
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)