TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705280.3.1
(980 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA923476.1|CA923476 MTU7CL.P11.A04 Aspen leaf cDNA Libra... 45 1e-013
gb|CA923697.1|CA923697 MTU7CL.P13.H02 Aspen leaf cDNA Libra... 45 2e-007
gb|BU891917.1|BU891917 P057A10 Populus petioles cDNA librar... 29 0.33
gb|DN498925.1|DN498925 T008F02.5pR Populus shoot meristem c... 35 0.65
gb|DT519119.1|DT519119 WS02440.B21_F11 PTxD-ICC-N-A-14 Popu... 30 0.65
gb|DT519360.1|DT519360 WS02441.B21_E08 PTxD-ICC-N-A-14 Popu... 30 0.69
gb|DT480851.1|DT480851 WS02530.BR_B22 PT-MB-N-A-15 Populus ... 28 1.1
gb|DT486131.1|DT486131 WS02530.B21_B22 PT-MB-N-A-15 Populus... 28 1.1
gb|AJ771440.1|AJ771440 AJ771440 Populus euphratica root 3-6... 28 1.1
gb|BU811878.1|BU811878 UL89TF02 Populus leaf cDNA library P... 24 1.2
gb|BU835652.1|BU835652 T076G05 Populus apical shoot cDNA li... 26 1.2
gb|BU870191.1|BU870191 Q009I06 Populus flower cDNA library ... 33 2.1
gb|CK111129.1|CK111129 Q009E03 Populus dormant bud cDNA lib... 33 2.1
gb|DN496715.1|DN496715 Q009E16.5pR Populus dormant bud cDNA... 33 2.1
gb|DT476823.1|DT476823 WS01230.B21_P14 PT-GT-FL-A-3 Populus... 27 2.6
gb|DT519259.1|DT519259 WS02440.B21_O03 PTxD-ICC-N-A-14 Popu... 27 2.6
gb|CN524608.1|CN524608 GQ015M16.T3_G04 GQ015 Populus tricho... 27 2.6
gb|DN484581.1|DN484581 I061P48.3pR Populus senescing leaves... 27 2.6
gb|BI126332.1|BI126332 I073P86P Populus leaf cDNA library P... 27 2.7
gb|BP930619.1|BP930619 BP930619 full-length enriched poplar... 33 2.9
gb|CV227976.1|CV227976 WS0168.B21_L22 PT-DX-A-7 Populus tri... 24 3.1
gb|CV253188.1|CV253188 WS0221.B21_C10 PTxD-ICC-A-12 Populus... 24 3.2
gb|DT519341.1|DT519341 WS02441.B21_D04 PTxD-ICC-N-A-14 Popu... 24 3.3
gb|CA821351.1|CA821351 RSH01G07 two-month-old roots from cl... 27 3.6
gb|CV276431.1|CV276431 WS0179.B21_M05 PTxD-NR-A-8 Populus t... 24 3.8
gb|CA825753.1|CA825753 R67A04 two-month-old roots from clon... 33 4.0
gb|DN490103.1|DN490103 UA54DPE10.3pR Populus dormant cambiu... 33 4.0
gb|DT478134.1|DT478134 WS02521.BR_P01 PT-MB-N-A-15 Populus ... 33 4.0
gb|DT483202.1|DT483202 WS02521.B21_P01 PT-MB-N-A-15 Populus... 33 4.0
gb|CV260933.1|CV260933 WS02015.B21_G10 PTxN-IB-N-A-11 Popul... 24 4.1
gb|DT525343.1|DT525343 WS02045.C21_B13 PTxN-IB-N-A-11 Popul... 24 4.5
gb|CF233324.1|CF233324 PtaJXO0021H8H0816 Poplar cDNA librar... 32 5.5
gb|CK099313.1|CK099313 A062P05.5pR Hybrid aspen plasmid lib... 25 6.1
gb|AI164487.1|AI164487 A062p05u Hybrid aspen plasmid librar... 25 6.2
gb|BU897367.1|BU897367 X055H04 Populus wood cDNA library Po... 28 6.2
gb|DN503098.1|DN503098 X055H04.5pR Populus wood cDNA librar... 28 6.4
gb|DN493083.1|DN493083 X055H04.3pR Populus wood cDNA librar... 28 6.5
gb|BP926612.1|BP926612 BP926612 full-length enriched poplar... 28 6.7
gb|CV241401.1|CV241401 WS02512.B21_B17 PT-MB-N-A-15 Populus... 28 7.3
gb|DT490487.1|DT490487 WS02545.B21_B16 PT-MB-N-A-15 Populus... 28 7.3
>gb|CA923476.1|CA923476 MTU7CL.P11.A04 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 395
Score = 44.9 bits (92), Expect(3) = 1e-013
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1 / -2
Query: 610 SYACAENAYCYNSSNGIGYRCNCSSGFEGNPYL 708
S AC + C++ NG G C C G++GNPYL
Sbjct: 328 SNACQGQSKCHDPENGFGNICKCLDGYQGNPYL 230
Score = 41.7 bits (85), Expect(3) = 1e-013
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1 / -2
Query: 760 CTNRCSNTIGGFQCTCPAGMSGDGLKEGSGC 852
C++ C +T G + C+CP G GDG +G C
Sbjct: 175 CSHTCIDTEGNYTCSCPKGYHGDGRIDGERC 83
Score = 26.6 bits (52), Expect(3) = 1e-013
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 715 PNGCTDINEC 744
PNGC +INEC
Sbjct: 229 PNGCQNINEC 200
>gb|CA923697.1|CA923697 MTU7CL.P13.H02 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 275
Score = 44.9 bits (92), Expect(3) = 2e-007
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1 / -2
Query: 610 SYACAENAYCYNSSNGIGYRCNCSSGFEGNPYL 708
S AC + C++ NG G C C G++GNPYL
Sbjct: 208 SNACQGQSKCHDPENGFGNICKCLDGYQGNPYL 110
Score = 26.2 bits (51), Expect(3) = 2e-007
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 715 PNGCTDINEC 744
PNGC +INEC
Sbjct: 109 PNGCGNINEC 80
Score = 21.6 bits (41), Expect(3) = 2e-007
Identities = 5/13 (38%), Positives = 10/13 (76%)
Frame = +1 / -2
Query: 553 VVLEWSVNGSSCE 591
V+++WS+ + CE
Sbjct: 268 VIVDWSIGRNKCE 230
>gb|BU891917.1|BU891917 P057A10 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 745
Score = 28.9 bits (57), Expect(2) = 0.33
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1 / +1
Query: 151 SQQCIGGTANSSVNLEGTVFTFS 219
S C G ANS++N+ G+ F FS
Sbjct: 592 SSGCSGRGANSAINMTGSPFAFS 660
Score = 24.8 bits (48), Expect(2) = 0.33
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1 / +1
Query: 229 NKFTALGCNVVAML 270
N FTA+GCN A+L
Sbjct: 667 NSFTAMGCNNRALL 708
>gb|DN498925.1|DN498925 T008F02.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T008F02 5', mRNA sequence
Length = 757
Score = 35.3 bits (71), Expect = 0.65
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1 / -3
Query: 265 MLLNGSTGYSGGCASFCSSGNNIIDGSCSGVACCQAPVPKGLKKLDLEFS 414
+LL GS+ YS + CSS ++ I CSG C +P L + FS
Sbjct: 752 ILLQGSSSYSSSSLTACSSFSSRILLKCSGRILCMSP*SPPLSRSSNSFS 603
>gb|DT519119.1|DT519119 WS02440.B21_F11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_F11 3', mRNA sequence
Length = 858
Score = 29.8 bits (59), Expect(2) = 0.65
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / -3
Query: 670 CNCSSGFEGNPYL 708
C+C+ G++GNPYL
Sbjct: 148 CSCNLGYDGNPYL 110
Score = 25.7 bits (50), Expect(2) = 0.65
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1 / -3
Query: 346 CSGVACCQAPVPKGLK 393
CSG CCQ +P L+
Sbjct: 478 CSGNNCCQTRIPSNLQ 431
>gb|DT519360.1|DT519360 WS02441.B21_E08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02441_E08 3', mRNA sequence
Length = 911
Score = 29.8 bits (59), Expect(2) = 0.69
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / -2
Query: 670 CNCSSGFEGNPYL 708
C+C+ G++GNPYL
Sbjct: 148 CSCNLGYDGNPYL 110
Score = 25.7 bits (50), Expect(2) = 0.69
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1 / -2
Query: 346 CSGVACCQAPVPKGLK 393
CSG CCQ +P L+
Sbjct: 478 CSGNNCCQTRIPSNLQ 431
>gb|DT480851.1|DT480851 WS02530.BR_B22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_B22 5', mRNA sequence
Length = 730
Score = 28.5 bits (56), Expect(2) = 1.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1 / -1
Query: 769 RCSNTIGGFQCTCPAGM 819
+C NT G ++C+C G+
Sbjct: 526 KCKNTWGSYECSCSGGL 476
Score = 23.4 bits (45), Expect(2) = 1.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / -1
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC + C
Sbjct: 592 GVNSCEDVDECKDKVAC 542
>gb|DT486131.1|DT486131 WS02530.B21_B22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_B22 3', mRNA sequence
Length = 730
Score = 28.5 bits (56), Expect(2) = 1.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1 / +1
Query: 769 RCSNTIGGFQCTCPAGM 819
+C NT G ++C+C G+
Sbjct: 205 KCKNTWGSYECSCSGGL 255
Score = 23.4 bits (45), Expect(2) = 1.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / +1
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC + C
Sbjct: 139 GVNSCEDVDECKDKVAC 189
>gb|AJ771440.1|AJ771440 AJ771440 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600001C03F1, mRNA sequence
Length = 344
Score = 28.5 bits (56), Expect(2) = 1.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1 / -2
Query: 769 RCSNTIGGFQCTCPAGM 819
+C NT G ++C+C G+
Sbjct: 103 KCKNTWGSYECSCSGGL 53
Score = 23.4 bits (45), Expect(2) = 1.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / -2
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC + C
Sbjct: 169 GVNSCDDVDECKDKVAC 119
>gb|BU811878.1|BU811878 UL89TF02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 423
Score = 24.4 bits (47), Expect(3) = 1.2
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1 / +3
Query: 772 CSNTIGGFQCTC 807
C NT G ++C+C
Sbjct: 147 CKNTWGSYECSC 182
Score = 23.9 bits (46), Expect(3) = 1.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / +3
Query: 712 GPNGCTDINECITRNPC 762
G C D++EC R C
Sbjct: 78 GVKSCVDVDECQERKAC 128
Score = 21.6 bits (41), Expect(3) = 1.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1 / +3
Query: 661 GYRCNCSSGFEGN 699
G +C C GF+G+
Sbjct: 39 GGKCQCPPGFKGD 77
>gb|BU835652.1|BU835652 T076G05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 237
Score = 26.2 bits (51), Expect(2) = 1.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1 / +2
Query: 199 GTVFTFSDTRNKFT 240
G +F+FS RNKFT
Sbjct: 95 GNIFSFSTKRNKFT 136
Score = 25.3 bits (49), Expect(2) = 1.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2 / +2
Query: 620 AQRMPTATTHQTESVTAAIAP 682
A+R T H+T S TAA+ P
Sbjct: 146 ARRFITIQLHRTASATAAVTP 208
>gb|BU870191.1|BU870191 Q009I06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 477
Score = 33.5 bits (67), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3 / -2
Query: 429 QQRHRLRLLAMWSGLRRGAGFIC 497
Q RHRL L +W G+R+ A IC
Sbjct: 431 QSRHRLHLRRLWQGIRKWAQAIC 363
>gb|CK111129.1|CK111129 Q009E03 Populus dormant bud cDNA library Populus tremula cDNA clone
Q009E03 5', mRNA sequence
Length = 526
Score = 33.5 bits (67), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3 / -1
Query: 429 QQRHRLRLLAMWSGLRRGAGFIC 497
Q RHRL L +W G+R+ A IC
Sbjct: 457 QSRHRLHLRRLWQGIRKWAQAIC 389
>gb|DN496715.1|DN496715 Q009E16.5pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q009E16 5', mRNA sequence
Length = 776
Score = 33.5 bits (67), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3 / -3
Query: 429 QQRHRLRLLAMWSGLRRGAGFIC 497
Q RHRL L +W G+R+ A IC
Sbjct: 447 QSRHRLHLRRLWQGIRKWAQAIC 379
>gb|DT476823.1|DT476823 WS01230.B21_P14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01230_P14 3', mRNA sequence
Length = 952
Score = 27.1 bits (53), Expect(2) = 2.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / -1
Query: 769 RCSNTIGGFQCTCPAGM 819
+C NT G + C+C G+
Sbjct: 703 KCKNTWGSYDCSCGGGL 653
Score = 23.4 bits (45), Expect(2) = 2.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / -1
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC + C
Sbjct: 769 GVNSCEDVDECKDKLAC 719
>gb|DT519259.1|DT519259 WS02440.B21_O03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_O03 3', mRNA sequence
Length = 901
Score = 27.1 bits (53), Expect(2) = 2.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / -3
Query: 769 RCSNTIGGFQCTCPAGM 819
+C NT G + C+C G+
Sbjct: 716 KCKNTWGSYDCSCGGGL 666
Score = 23.4 bits (45), Expect(2) = 2.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / -3
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC + C
Sbjct: 782 GVNSCEDVDECKDKLAC 732
>gb|CN524608.1|CN524608 GQ015M16.T3_G04 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M16_G04 5', mRNA sequence
Length = 819
Score = 27.1 bits (53), Expect(2) = 2.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / -3
Query: 769 RCSNTIGGFQCTCPAGM 819
+C NT G + C+C G+
Sbjct: 487 KCKNTWGSYDCSCGGGL 437
Score = 23.4 bits (45), Expect(2) = 2.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / -3
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC + C
Sbjct: 553 GVNSCEDVDECKDKLAC 503
>gb|DN484581.1|DN484581 I061P48.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I061P48 3', mRNA sequence
Length = 688
Score = 27.1 bits (53), Expect(2) = 2.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / -1
Query: 769 RCSNTIGGFQCTCPAGM 819
+C NT G + C+C G+
Sbjct: 619 KCKNTWGSYDCSCGGGL 569
Score = 23.4 bits (45), Expect(2) = 2.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / -1
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC + C
Sbjct: 685 GVNSCEDVDECEDKLAC 635
>gb|BI126332.1|BI126332 I073P86P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 485
Score = 27.1 bits (53), Expect(2) = 2.7
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1 / +2
Query: 277 GSTGYSGGCASFCSSGNNIIDGSCSGVACCQAPVPKGLK 393
G T G SS + CSG CCQ +P L+
Sbjct: 125 GCTSTCGANNLTSSSTEGKENSYCSGNNCCQTTIPSSLQ 241
Score = 23.4 bits (45), Expect(2) = 2.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1 / +2
Query: 175 ANSSVNLEGTVFTFSDT 225
AN S+N+ G+ F+FS +
Sbjct: 8 ANISINMTGSPFSFSSS 58
>gb|BP930619.1|BP930619 BP930619 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-012_I08.r 3', mRNA sequence
Length = 253
Score = 33.0 bits (66), Expect = 2.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3 / +1
Query: 825 RRPQGRKWLQWSKHTSDCNSCRISSASASPHPWLLD 932
R+ Q R W KH C SCRI S P +LD
Sbjct: 130 RQQQLRPWSLLRKHCEPCRSCRIHSLPHFSTPGVLD 237
>gb|CV227976.1|CV227976 WS0168.B21_L22 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_L22
3', mRNA sequence
Length = 717
Score = 24.4 bits (47), Expect(3) = 3.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1 / -1
Query: 772 CSNTIGGFQCTC 807
C NT G ++C+C
Sbjct: 600 CKNTWGSYECSC 565
Score = 23.9 bits (46), Expect(3) = 3.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / -1
Query: 712 GPNGCTDINECITRNPC 762
G C D++EC R C
Sbjct: 669 GVKSCVDVDECKERKAC 619
Score = 21.6 bits (41), Expect(3) = 3.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1 / -1
Query: 661 GYRCNCSSGFEGN 699
G +C C GF+G+
Sbjct: 708 GGKCQCPPGFKGD 670
>gb|CV253188.1|CV253188 WS0221.B21_C10 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_C10 3', mRNA sequence
Length = 722
Score = 24.4 bits (47), Expect(3) = 3.2
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1 / -1
Query: 772 CSNTIGGFQCTC 807
C NT G ++C+C
Sbjct: 602 CKNTWGSYECSC 567
Score = 23.9 bits (46), Expect(3) = 3.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / -1
Query: 712 GPNGCTDINECITRNPC 762
G C D++EC R C
Sbjct: 671 GVKSCVDVDECKERKAC 621
Score = 21.6 bits (41), Expect(3) = 3.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1 / -1
Query: 661 GYRCNCSSGFEGN 699
G +C C GF+G+
Sbjct: 710 GGKCQCPPGFKGD 672
>gb|DT519341.1|DT519341 WS02441.B21_D04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02441_D04 3', mRNA sequence
Length = 741
Score = 24.4 bits (47), Expect(3) = 3.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1 / +2
Query: 772 CSNTIGGFQCTC 807
C NT G ++C+C
Sbjct: 299 CKNTWGSYECSC 334
Score = 23.9 bits (46), Expect(3) = 3.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / +2
Query: 712 GPNGCTDINECITRNPC 762
G C D++EC R C
Sbjct: 230 GVKSCVDVDECKERKAC 280
Score = 21.6 bits (41), Expect(3) = 3.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1 / +2
Query: 661 GYRCNCSSGFEGN 699
G +C C GF+G+
Sbjct: 191 GGKCQCPPGFKGD 229
>gb|CA821351.1|CA821351 RSH01G07 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 563
Score = 26.6 bits (52), Expect(2) = 3.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / +3
Query: 769 RCSNTIGGFQCTCPAGM 819
+C NT G + C+C G+
Sbjct: 78 QCKNTWGSYDCSCGGGL 128
Score = 23.4 bits (45), Expect(2) = 3.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / +1
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC + C
Sbjct: 13 GVNSCEDVDECKDKLAC 63
>gb|CV276431.1|CV276431 WS0179.B21_M05 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0179_M05 3', mRNA sequence
Length = 798
Score = 24.4 bits (47), Expect(3) = 3.8
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1 / -3
Query: 772 CSNTIGGFQCTC 807
C NT G ++C+C
Sbjct: 679 CKNTWGSYECSC 644
Score = 23.9 bits (46), Expect(3) = 3.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / -3
Query: 712 GPNGCTDINECITRNPC 762
G C D++EC R C
Sbjct: 748 GVKSCVDVDECKERKAC 698
Score = 21.6 bits (41), Expect(3) = 3.8
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1 / -3
Query: 661 GYRCNCSSGFEGN 699
G +C C GF+G+
Sbjct: 787 GGKCQCPPGFKGD 749
>gb|CA825753.1|CA825753 R67A04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 616
Score = 32.6 bits (65), Expect = 4.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2 / +3
Query: 44 LCVDTVVRCCPSETACLGFLTSRCLMVL*AYWLVLVL 154
L + ++ C P+ T L FLT CLM+L ++L+L
Sbjct: 81 LAMQLLMMCLPTLTPTLAFLTVLCLMMLFVLVMLLIL 191
>gb|DN490103.1|DN490103 UA54DPE10.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA54DPE10 3', mRNA sequence
Length = 844
Score = 32.6 bits (65), Expect = 4.0
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2 / -2
Query: 59 VVRCCPSETACLGFLTSRCLMVL*AYWLVLVL 154
++ C P+ T L FLT CLM+L A ++L+L
Sbjct: 762 LMMCLPTLTPTLAFLTVLCLMMLFALVMLLIL 667
>gb|DT478134.1|DT478134 WS02521.BR_P01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_P01 5', mRNA sequence
Length = 719
Score = 32.6 bits (65), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1 / +1
Query: 95 PSMLFPMDSNGPLCPHTTLNPRDRE 21
PS+L P S+G CP TT +P + E
Sbjct: 211 PSLLQPTSSSGSFCPTTTTDPPEAE 285
>gb|DT483202.1|DT483202 WS02521.B21_P01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_P01 3', mRNA sequence
Length = 718
Score = 32.6 bits (65), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1 / -1
Query: 95 PSMLFPMDSNGPLCPHTTLNPRDRE 21
PS+L P S+G CP TT +P + E
Sbjct: 508 PSLLQPTSSSGSFCPTTTTDPPEAE 434
>gb|CV260933.1|CV260933 WS02015.B21_G10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02015_G10 3', mRNA sequence
Length = 832
Score = 24.4 bits (47), Expect(3) = 4.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1 / -2
Query: 772 CSNTIGGFQCTC 807
C NT G ++C+C
Sbjct: 675 CKNTWGSYECSC 640
Score = 23.9 bits (46), Expect(3) = 4.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / -2
Query: 712 GPNGCTDINECITRNPC 762
G C D++EC R C
Sbjct: 744 GVKSCVDVDECKERKAC 694
Score = 21.6 bits (41), Expect(3) = 4.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1 / -2
Query: 661 GYRCNCSSGFEGN 699
G +C C GF+G+
Sbjct: 783 GGKCQCPPGFKGD 745
>gb|DT525343.1|DT525343 WS02045.C21_B13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02045_B13 3', mRNA sequence
Length = 875
Score = 24.4 bits (47), Expect(3) = 4.5
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1 / -1
Query: 772 CSNTIGGFQCTC 807
C NT G ++C+C
Sbjct: 677 CKNTWGSYECSC 642
Score = 23.9 bits (46), Expect(3) = 4.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / -1
Query: 712 GPNGCTDINECITRNPC 762
G C D++EC R C
Sbjct: 746 GVKSCVDVDECKERKAC 696
Score = 21.6 bits (41), Expect(3) = 4.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1 / -1
Query: 661 GYRCNCSSGFEGN 699
G +C C GF+G+
Sbjct: 785 GGKCQCPPGFKGD 747
>gb|CF233324.1|CF233324 PtaJXO0021H8H0816 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 733
Score = 32.1 bits (64), Expect = 5.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2 / +2
Query: 44 LCVDTVVRCCPSETACLGFLTSRCLMVL*AYWLVLVL 154
L ++ C P+ T L FLT CLM+L ++L+L
Sbjct: 293 LATQLLMMCLPTLTPTLAFLTVLCLMMLFVLVMLLIL 403
>gb|CK099313.1|CK099313 A062P05.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A062P05 5', mRNA sequence
Length = 547
Score = 25.3 bits (49), Expect(2) = 6.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +2 / -1
Query: 242 LWVVTWWPC 268
LWV+ WW C
Sbjct: 163 LWVLIWWSC 137
Score = 23.9 bits (46), Expect(2) = 6.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1 / -1
Query: 292 SGGCASFCSSGNNIID 339
SGGC S C G+ + D
Sbjct: 130 SGGCCSGCGGGDAVED 83
>gb|AI164487.1|AI164487 A062p05u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 455
Score = 25.3 bits (49), Expect(2) = 6.2
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +2 / -1
Query: 242 LWVVTWWPC 268
LWV+ WW C
Sbjct: 176 LWVLIWWSC 150
Score = 23.9 bits (46), Expect(2) = 6.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1 / -2
Query: 292 SGGCASFCSSGNNIID 339
SGGC S C G+ + D
Sbjct: 142 SGGCCSGCGGGDAVED 95
>gb|BU897367.1|BU897367 X055H04 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 457
Score = 27.6 bits (54), Expect(2) = 6.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / +1
Query: 802 CTGNHLLCLSTYWC 761
CT H +CLS WC
Sbjct: 247 CTQTHAVCLSRCWC 288
Score = 23.4 bits (45), Expect(2) = 6.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2 / +1
Query: 475 RRPDHMASNRNRCRCWLY*Y 416
R P H+ ++ R CWL *+
Sbjct: 313 RGPPHVLESQFRSSCWLR*F 372
>gb|DN503098.1|DN503098 X055H04.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055H04 5', mRNA sequence
Length = 474
Score = 27.6 bits (54), Expect(2) = 6.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / +3
Query: 802 CTGNHLLCLSTYWC 761
CT H +CLS WC
Sbjct: 246 CTQTHAVCLSRCWC 287
Score = 23.4 bits (45), Expect(2) = 6.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2 / +3
Query: 475 RRPDHMASNRNRCRCWLY*Y 416
R P H+ ++ R CWL *+
Sbjct: 312 RGPPHVLESQFRSSCWLR*F 371
>gb|DN493083.1|DN493083 X055H04.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055H04 3', mRNA sequence
Length = 483
Score = 27.6 bits (54), Expect(2) = 6.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / -3
Query: 802 CTGNHLLCLSTYWC 761
CT H +CLS WC
Sbjct: 238 CTQTHAVCLSRCWC 197
Score = 23.4 bits (45), Expect(2) = 6.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2 / -3
Query: 475 RRPDHMASNRNRCRCWLY*Y 416
R P H+ ++ R CWL *+
Sbjct: 172 RGPPHVLESQFRSSCWLR*F 113
>gb|BP926612.1|BP926612 BP926612 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-061_D23.f 5', mRNA sequence
Length = 365
Score = 28.5 bits (56), Expect(2) = 6.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2 / -1
Query: 133 CSQDHQATRCQESQACCFRWTATD 62
CS + S +CCF WT T+
Sbjct: 95 CSSNGNFLNISNSASCCFSWTETN 24
Score = 22.1 bits (42), Expect(2) = 6.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2 / -1
Query: 712 LAGMGSPRIHWSNCSGNR 659
+A +G WS C GN+
Sbjct: 287 IAAVGLLSSSWSTCGGNK 234
>gb|CV241401.1|CV241401 WS02512.B21_B17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_B17 3', mRNA sequence
Length = 542
Score = 27.6 bits (54), Expect(2) = 7.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / -1
Query: 802 CTGNHLLCLSTYWC 761
CT H +CLS WC
Sbjct: 311 CTQTHAVCLSRCWC 270
Score = 23.4 bits (45), Expect(2) = 7.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2 / -1
Query: 475 RRPDHMASNRNRCRCWLY*Y 416
R P H+ ++ R CWL *+
Sbjct: 245 RGPPHVLESQFRSSCWLC*F 186
>gb|DT490487.1|DT490487 WS02545.B21_B16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02545_B16 3', mRNA sequence
Length = 542
Score = 27.6 bits (54), Expect(2) = 7.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / -1
Query: 802 CTGNHLLCLSTYWC 761
CT H +CLS WC
Sbjct: 311 CTQTHAVCLSRCWC 270
Score = 23.4 bits (45), Expect(2) = 7.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2 / -1
Query: 475 RRPDHMASNRNRCRCWLY*Y 416
R P H+ ++ R CWL *+
Sbjct: 245 RGPPHVLESQFRSSCWLC*F 186
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.316 0.133 0.426
Matrix: BLOSUM62
Number of Hits to DB: 547,237,893
Number of Sequences: 369679
Number of extensions: 8804725
Number of successful extensions: 55169
Number of sequences better than 10.0: 43
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 13763746909
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)