TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4790360.2.1
(667 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV255308.1|CV255308 WS02412.B21_K12 PTxD-ICC-N-A-14 Popu... 193 9e-049
gb|DT517578.1|DT517578 WS02434.B21_L09 PTxD-ICC-N-A-14 Popu... 193 9e-049
gb|CK096470.1|CK096470 UB15CPF09.3pR Populus active cambium... 190 9e-048
gb|CX655011.1|CX655011 PO01003G06 Poplar SC cDNA library Po... 190 9e-048
gb|CK092473.1|CK092473 G084P78.3pR Populus tension wood cDN... 170 7e-042
gb|CA931213.1|CA931213 MTU2TA.P4.A06 Aspen apex cDNA Librar... 158 4e-038
gb|CA931239.1|CA931239 MTU2TA.P4.E07 Aspen apex cDNA Librar... 158 4e-038
gb|CX655147.1|CX655147 PO02030E06 Poplar SC cDNA library Po... 102 3e-021
>gb|CV255308.1|CV255308 WS02412.B21_K12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02412_K12 3', mRNA sequence
Length = 736
Score = 193 bits (416), Expect = 9e-049
Identities = 71/112 (63%), Positives = 88/112 (78%)
Frame = +2 / -2
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+EP S+LLG +YFLHAYGPIY RNNSFRMFSNEDVTIG+W+LAMNVNH
Sbjct: 618 YEPLSYLLGKEYFLHAYGPIYALSADVVASLVALRNNSFRMFSNEDVTIGAWILAMNVNH 439
Query: 182 ENTHALCEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAE 337
E+ ALC P+CT SSIAVWDIPKCSGLC+PE ++LELH+++ C+ PT+ ++
Sbjct: 438 EDNRALCSPECTPSSIAVWDIPKCSGLCNPEARLLELHQQESCSKSPTMESD 283
Score = 138 bits (297), Expect = 2e-032
Identities = 65/90 (72%), Positives = 70/90 (77%)
Frame = -2 / +2
Query: 270 GWHRPEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKLLFRNATK 91
G PEH GMSQTAI+D V SG SA + S LTFIA IH PIVTSSLLNIRKLLF ATK
Sbjct: 350 GLQSPEHLGMSQTAIDDGVHSGEHSALLSS*LTFIARIHAPIVTSSLLNIRKLLFLRATK 529
Query: 90 LATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
LATTSA++A IGPYA*RKY PSK D GS+
Sbjct: 530 LATTSAERAYIGPYA*RKYSFPSK*DSGSY 619
>gb|DT517578.1|DT517578 WS02434.B21_L09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_L09 3', mRNA sequence
Length = 911
Score = 193 bits (416), Expect = 9e-049
Identities = 71/112 (63%), Positives = 88/112 (78%)
Frame = +2 / -1
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+EP S+LLG +YFLHAYGPIY RNNSFRMFSNEDVTIG+W+LAMNVNH
Sbjct: 635 YEPLSYLLGKEYFLHAYGPIYALSADVVASLVALRNNSFRMFSNEDVTIGAWILAMNVNH 456
Query: 182 ENTHALCEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAE 337
E+ ALC P+CT SSIAVWDIPKCSGLC+PE ++LELH+++ C+ PT+ ++
Sbjct: 455 EDNRALCSPECTPSSIAVWDIPKCSGLCNPEARLLELHQQESCSKSPTMESD 300
Score = 138 bits (297), Expect = 2e-032
Identities = 65/90 (72%), Positives = 70/90 (77%)
Frame = -2 / +1
Query: 270 GWHRPEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKLLFRNATK 91
G PEH GMSQTAI+D V SG SA + S LTFIA IH PIVTSSLLNIRKLLF ATK
Sbjct: 367 GLQSPEHLGMSQTAIDDGVHSGEHSALLSS*LTFIARIHAPIVTSSLLNIRKLLFLRATK 546
Query: 90 LATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
LATTSA++A IGPYA*RKY PSK D GS+
Sbjct: 547 LATTSAERAYIGPYA*RKYSFPSK*DSGSY 636
>gb|CK096470.1|CK096470 UB15CPF09.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB15CPF09 3', mRNA sequence
Length = 774
Score = 190 bits (409), Expect = 9e-048
Identities = 70/112 (62%), Positives = 89/112 (79%)
Frame = +2 / -3
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+EP S+LLG++YFLHAYGPIY R+NSFRMFSNEDVTIG+W+LAMNVNH
Sbjct: 481 YEPLSYLLGTEYFLHAYGPIYALSADVVASLVALRDNSFRMFSNEDVTIGAWILAMNVNH 302
Query: 182 ENTHALCEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAE 337
E+ ALC P+CT SSIAVWDIPKCSGLC+PE ++LELH+++ C+ PT+ ++
Sbjct: 301 EDNRALCSPECTPSSIAVWDIPKCSGLCNPEDRLLELHQQESCSKNPTMESD 146
Score = 135 bits (289), Expect = 3e-031
Identities = 64/90 (71%), Positives = 69/90 (76%)
Frame = -2 / +3
Query: 270 GWHRPEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKLLFRNATK 91
G PEH GMSQTAI+D V SG SA + S LTFIA IH PIVTSSLLNIRKLL ATK
Sbjct: 213 GLQSPEHLGMSQTAIDDGVHSGEHSALLSS*LTFIARIHAPIVTSSLLNIRKLLSLRATK 392
Query: 90 LATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
LATTSA++A IGPYA*RKY PSK D GS+
Sbjct: 393 LATTSAERAYIGPYA*RKYSVPSK*DSGSY 482
>gb|CX655011.1|CX655011 PO01003G06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003G06 5', mRNA sequence
Length = 693
Score = 190 bits (409), Expect = 9e-048
Identities = 70/112 (62%), Positives = 89/112 (79%)
Frame = +2 / +3
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+EP S+LLG++YFLHAYGPIY R+NSFRMFSNEDVTIG+W+LAMNVNH
Sbjct: 285 YEPLSYLLGTEYFLHAYGPIYALSADVVASLVALRDNSFRMFSNEDVTIGAWILAMNVNH 464
Query: 182 ENTHALCEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAE 337
E+ ALC P+CT SSIAVWDIPKCSGLC+PE ++LELH+++ C+ PT+ ++
Sbjct: 465 EDNRALCSPECTPSSIAVWDIPKCSGLCNPEDRLLELHQQESCSKNPTMESD 620
Score = 135 bits (289), Expect = 3e-031
Identities = 64/90 (71%), Positives = 69/90 (76%)
Frame = -2 / -3
Query: 270 GWHRPEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKLLFRNATK 91
G PEH GMSQTAI+D V SG SA + S LTFIA IH PIVTSSLLNIRKLL ATK
Sbjct: 553 GLQSPEHLGMSQTAIDDGVHSGEHSALLSS*LTFIARIHAPIVTSSLLNIRKLLSLRATK 374
Query: 90 LATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
LATTSA++A IGPYA*RKY PSK D GS+
Sbjct: 373 LATTSAERAYIGPYA*RKYSVPSK*DSGSY 284
>gb|CK092473.1|CK092473 G084P78.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G084P78 3', mRNA sequence
Length = 726
Score = 170 bits (366), Expect = 7e-042
Identities = 65/109 (59%), Positives = 78/109 (71%)
Frame = +2 / -3
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+E L+G++YFLHAYGPIY RNNS RMFSNEDVTIGSWMLAMNV H
Sbjct: 562 YETSGHLIGNEYFLHAYGPIYVLSAEVVASLASARNNSLRMFSNEDVTIGSWMLAMNVYH 383
Query: 182 ENTHALCEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTV 328
E+ A+C+P CT +SIAVWDIPKCSGLC+P +M ELH+ C+ PT+
Sbjct: 382 EDNRAICDPRCTPTSIAVWDIPKCSGLCNPASRMKELHKIDMCSKSPTL 236
Score = 104 bits (222), Expect = 5e-022
Identities = 54/105 (51%), Positives = 64/105 (60%)
Frame = -2 / +3
Query: 339 TSAATVGPPVHXXXXXXXXXXXSGWHRPEHFGMSQTAIEDSVQSGSQSACVFSWLTFIAS 160
+S +VG H +G H+PEH G+SQTAI+ V GS A + S TFIAS
Sbjct: 225 SSGGSVGLLEHISIL*SSFIRLAGLHKPEHLGISQTAIDVGVHRGSHMARLSS**TFIAS 404
Query: 159 IHDPIVTSSLLNIRKLLFRNATKLATTSADKA*IGPYA*RKYCDP 25
IHDP+VTSSLLNI KLLF ATTSA++ IGP A RKY P
Sbjct: 405 IHDPMVTSSLLNILKLLFLADANEATTSAERTYIGP*ACRKYSFP 539
>gb|CA931213.1|CA931213 MTU2TA.P4.A06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 376
Score = 158 bits (339), Expect = 4e-038
Identities = 61/97 (62%), Positives = 70/97 (72%)
Frame = +2 / -1
Query: 38 FLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCT 217
FLHAYGPIY RNNS RMFSNEDVTIGSWMLAMNV HE+ A+C+P CT
Sbjct: 376 FLHAYGPIYVLSAEVVASLASARNNSLRMFSNEDVTIGSWMLAMNVYHEDNRAICDPRCT 197
Query: 218 ESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTV 328
+SIAVWDIPKCSGLC+P +M ELH+ C+ PT+
Sbjct: 196 PTSIAVWDIPKCSGLCNPASRMKELHKIDMCSKSPTL 86
>gb|CA931239.1|CA931239 MTU2TA.P4.E07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 376
Score = 158 bits (339), Expect = 4e-038
Identities = 61/97 (62%), Positives = 70/97 (72%)
Frame = +2 / -1
Query: 38 FLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCT 217
FLHAYGPIY RNNS RMFSNEDVTIGSWMLAMNV HE+ A+C+P CT
Sbjct: 376 FLHAYGPIYVLSAEVVASLASARNNSLRMFSNEDVTIGSWMLAMNVYHEDNRAICDPRCT 197
Query: 218 ESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTV 328
+SIAVWDIPKCSGLC+P +M ELH+ C+ PT+
Sbjct: 196 PTSIAVWDIPKCSGLCNPASRMKELHKIDMCSKSPTL 86
>gb|CX655147.1|CX655147 PO02030E06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030E06 5', mRNA sequence
Length = 600
Score = 102 bits (217), Expect = 3e-021
Identities = 40/62 (64%), Positives = 45/62 (72%)
Frame = +2 / +3
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+EP S+LLG +YF HAYGPIY RNNSFRM SNEDVTIG+WMLAMNVNH
Sbjct: 414 YEPLSYLLGKEYFYHAYGPIYALSADVVASLVVLRNNSFRMSSNEDVTIGAWMLAMNVNH 593
Query: 182 EN 187
E+
Sbjct: 594 ED 599
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 353,326,931
Number of Sequences: 369679
Number of extensions: 5155144
Number of successful extensions: 47041
Number of sequences better than 1.0e-020: 8
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 8321374030
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)