TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866402.2.1
(406 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA librar... 147 3e-035
gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA librar... 147 3e-035
gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichoca... 146 7e-035
gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus ... 145 1e-034
gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus t... 145 1e-034
gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus ... 145 1e-034
gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus ... 145 1e-034
gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Popul... 145 1e-034
gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in... 143 5e-034
gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus ... 143 5e-034
gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus... 143 5e-034
gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus... 143 5e-034
gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Popul... 143 5e-034
gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus t... 143 5e-034
gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated wit... 143 5e-034
gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA librar... 143 5e-034
gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Pop... 143 5e-034
gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cD... 142 9e-034
gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Po... 142 1e-033
gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid lib... 142 1e-033
gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA li... 135 2e-031
gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Po... 78 3e-031
gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Popul... 127 5e-029
gb|CF235857.1|CF235857 PtaJXT0027H12H1216 Poplar cDNA libra... 122 1e-027
gb|CV229637.1|CV229637 WS01913.B21_P11 PT-DX-N-A-10 Populus... 122 1e-027
gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA librar... 121 2e-027
gb|DT469857.1|DT469857 WS01919.C21_B19 PT-DX-N-A-10 Populus... 121 3e-027
gb|BP932002.1|BP932002 BP932002 full-length enriched poplar... 120 4e-027
gb|BP933403.1|BP933403 BP933403 full-length enriched poplar... 119 7e-027
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 116 9e-026
gb|CK096914.1|CK096914 UB32BPD05.3pR Populus active cambium... 112 9e-025
gb|DN493190.1|DN493190 X068E11.3pR Populus wood cDNA librar... 111 3e-024
gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichoca... 108 2e-023
gb|DN503210.1|DN503210 X068E11.5pR Populus wood cDNA librar... 108 2e-023
gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichoca... 105 1e-022
>gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 3', mRNA sequence
Length = 632
Score = 147 bits (316), Expect = 3e-035
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L I+QA KPV++ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 515 TGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 336
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 335 LFNQAFSRGLQISRILGGHKKDR 267
>gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 5', mRNA sequence
Length = 599
Score = 147 bits (316), Expect = 3e-035
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L I+QA KPV++ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 118 TGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 297
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G KK R
Sbjct: 298 LFNQAFSRGLQISRILGGHKKDR 366
>gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_G13 5', mRNA sequence
Length = 686
Score = 146 bits (313), Expect = 7e-035
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L I+QA KPV++ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 211 TGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 390
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 391 LFNQAFSRGLQISRILGGHRKDR 459
>gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_H14 3', mRNA sequence
Length = 677
Score = 145 bits (311), Expect = 1e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L I+QA KP+++ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 449 TGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 270
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 269 LFNQAFSRGLQISRILGGPRKDR 201
>gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_N04 3', mRNA sequence
Length = 722
Score = 145 bits (311), Expect = 1e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L I+QA KP+++ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 449 TGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 270
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 269 LFNQAFSRGLQISRILGGPRKDR 201
>gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 3', mRNA sequence
Length = 595
Score = 145 bits (311), Expect = 1e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L I+QA KP+++ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 450 TGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 271
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 270 LFNQAFSRGLQISRILGGPRKDR 202
>gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 3', mRNA sequence
Length = 735
Score = 145 bits (311), Expect = 1e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L I+QA KP+++ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 449 TGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 270
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 269 LFNQAFSRGLQISRILGGPRKDR 201
>gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_J09 3', mRNA sequence
Length = 834
Score = 145 bits (311), Expect = 1e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L I+QA KP+++ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 454 TGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 275
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 274 LFNQAFSRGLQISRILGGPRKDR 206
>gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700003A08F1, mRNA sequence
Length = 527
Score = 143 bits (307), Expect = 5e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 467 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 288
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 287 LFNQAFSRGLQISRILGGPRKDR 219
>gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_K13 3', mRNA sequence
Length = 735
Score = 143 bits (307), Expect = 5e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 639 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 460
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 459 LFNQAFSRGLQISRILGGPRKDR 391
>gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01914_B17 3', mRNA sequence
Length = 679
Score = 143 bits (307), Expect = 5e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 639 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 460
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 459 LFNQAFSRGLQISRILGGPRKDR 391
>gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_F22 3', mRNA sequence
Length = 664
Score = 143 bits (307), Expect = 5e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 65 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 244
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 245 LFNQAFSRGLQISRILGGPRKDR 313
>gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_H24 3', mRNA sequence
Length = 839
Score = 143 bits (307), Expect = 5e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 640 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 461
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 460 LFNQAFSRGLQISRILGGPRKDR 392
>gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_C07 3', mRNA sequence
Length = 826
Score = 143 bits (307), Expect = 5e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 625 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 446
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 445 LFNQAFSRGLQISRILGGPRKDR 377
>gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 664
Score = 143 bits (307), Expect = 5e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 111 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 290
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 291 LFNQAFSRGLQISRILGGPRKDR 359
>gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N009C11 5', mRNA sequence
Length = 826
Score = 143 bits (307), Expect = 5e-034
Identities = 55/83 (66%), Positives = 68/83 (81%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW +L I+QA KP+++ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 427 TGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIIMGLLLFTPVAFLAWFPFVSEFQTRM 606
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G + R
Sbjct: 607 LFNQAFSRGLQISRILGGPRNDR 675
>gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_F05 3', mRNA sequence
Length = 884
Score = 143 bits (307), Expect = 5e-034
Identities = 56/83 (67%), Positives = 69/83 (83%)
Frame = -3 / -3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 642 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 463
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFNQAFSRGLQISRIL G +K R
Sbjct: 462 LFNQAFSRGLQISRILGGPRKDR 394
>gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 497
Score = 142 bits (305), Expect = 9e-034
Identities = 55/82 (67%), Positives = 69/82 (84%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 138 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGVLLFTPVAFLAWFPFVSEFQTRM 317
Query: 224 LFNQAFSRGLQISRILAGGKKQ 159
LFNQAFSRGLQISRIL G +K+
Sbjct: 318 LFNQAFSRGLQISRILGGPRKE 383
>gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 142 bits (304), Expect = 1e-033
Identities = 55/82 (67%), Positives = 69/82 (84%)
Frame = -3 / +3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 102 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 281
Query: 224 LFNQAFSRGLQISRILAGGKKQ 159
LFNQAFSRGLQISRIL G +K+
Sbjct: 282 LFNQAFSRGLQISRILGGPRKE 347
>gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A079P12 3', mRNA sequence
Length = 683
Score = 142 bits (304), Expect = 1e-033
Identities = 55/82 (67%), Positives = 69/82 (84%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+
Sbjct: 614 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRM 435
Query: 224 LFNQAFSRGLQISRILAGGKKQ 159
LFNQAFSRGLQISRIL G +K+
Sbjct: 434 LFNQAFSRGLQISRILGGPRKE 369
>gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 694
Score = 135 bits (289), Expect = 2e-031
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
+GW +L I+QA KP+I+ G WGSV+ L+RGYE +MG+++F PVA LA FPFVSEFQ R+
Sbjct: 221 SGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLA*FPFVSEFQTRM 400
Query: 224 LFNQAFSRGLQISRILAGGKKQ 159
LFNQAFSRGLQISRIL G +K+
Sbjct: 401 LFNQAFSRGLQISRILGGPRKE 466
>gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 426
Score = 78.0 bits (164), Expect(2) = 3e-031
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = -3 / +3
Query: 266 LAWFPFVSEFQARLLFNQAFSRGLQISRILAGGKKQR 156
LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G KK R
Sbjct: 258 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR 368
Score = 75.3 bits (158), Expect(2) = 3e-031
Identities = 28/52 (53%), Positives = 38/52 (73%)
Frame = -3 / +2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPF 249
TGW +L I+QA KPV++ G WGSV+ L+RGYE +MG+++F PVA PF
Sbjct: 119 TGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFPRLVPF 274
>gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_K15 3', mRNA sequence
Length = 495
Score = 127 bits (271), Expect = 5e-029
Identities = 49/75 (65%), Positives = 61/75 (81%)
Frame = -3 / -3
Query: 380 SQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSR 201
+QA KP+++ G WGSV+ L+RGYE +MG+++F PVA LAWFPF SEFQ R+LFNQAFSR
Sbjct: 433 AQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWFPFGSEFQTRMLFNQAFSR 254
Query: 200 GLQISRILAGGKKQR 156
GLQISRI G +K R
Sbjct: 253 GLQISRIFGGPRKDR 209
>gb|CF235857.1|CF235857 PtaJXT0027H12H1216 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 615
Score = 122 bits (261), Expect = 1e-027
Identities = 50/80 (62%), Positives = 63/80 (78%)
Frame = -3 / +1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+ A K ++ + GLW SV+ +R Y+ MG++IFVP+A L+WFPFVS FQ+RL
Sbjct: 196 TGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFVSTFQSRL 375
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 376 LFNQAFSRGLEISLILAGNK 435
>gb|CV229637.1|CV229637 WS01913.B21_P11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_P11 3', mRNA sequence
Length = 718
Score = 122 bits (261), Expect = 1e-027
Identities = 50/80 (62%), Positives = 63/80 (78%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+ A K ++ + GLW SV+ +R Y+ MG++IFVP+A L+WFPFVS FQ+RL
Sbjct: 510 TGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFVSTFQSRL 331
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 330 LFNQAFSRGLEISLILAGNK 271
>gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 371
Score = 121 bits (259), Expect = 2e-027
Identities = 49/79 (62%), Positives = 60/79 (75%)
Frame = -3 / +3
Query: 392 ILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQ 213
+L I+QA KPV + G WGSV+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+L NQ
Sbjct: 6 MLLIAQACKPVAQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLVNQ 185
Query: 212 AFSRGLQISRILAGGKKQR 156
AF+RGLQ S L G K R
Sbjct: 186 AFNRGLQTSSTLGGHNKDR 242
>gb|DT469857.1|DT469857 WS01919.C21_B19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_B19 3', mRNA sequence
Length = 651
Score = 121 bits (258), Expect = 3e-027
Identities = 48/78 (61%), Positives = 63/78 (80%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
T W IL I+ A KPV+K GLW S+++++R Y+ MG++IF+P+A L+WFPFVS FQ RL
Sbjct: 641 TIWGILSIASAWKPVMKRMGLWKSIRSIARLYDAGMGMLIFIPIAFLSWFPFVSTFQTRL 462
Query: 224 LFNQAFSRGLQISRILAG 171
+FNQAFSRGL+IS ILAG
Sbjct: 461 MFNQAFSRGLEISLILAG 408
>gb|BP932002.1|BP932002 BP932002 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_I23.r 3', mRNA sequence
Length = 587
Score = 120 bits (257), Expect = 4e-027
Identities = 50/80 (62%), Positives = 62/80 (77%)
Frame = -3 / -1
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+ A K ++ + GLW SV+ +R Y+ MG +IFVP+A L+WFPFVS FQ+RL
Sbjct: 515 TGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGALIFVPIAFLSWFPFVSTFQSRL 336
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 335 LFNQAFSRGLEISLILAGNK 276
>gb|BP933403.1|BP933403 BP933403 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-050_P13.r 3', mRNA sequence
Length = 620
Score = 119 bits (255), Expect = 7e-027
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = -3 / -2
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW IL I+ A K ++ + GLW SV+ +R Y+ MG +IFVP+A L+WFPFVS FQ RL
Sbjct: 517 TGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGALIFVPIAFLSWFPFVSTFQPRL 338
Query: 224 LFNQAFSRGLQISRILAGGK 165
LFNQAFSRGL+IS ILAG K
Sbjct: 337 LFNQAFSRGLEISLILAGNK 278
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 116 bits (247), Expect = 9e-026
Identities = 45/76 (59%), Positives = 62/76 (81%)
Frame = -3 / +3
Query: 398 WAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLF 219
++ QI+ A KPV+K GLW S+++++R Y+ MG++IF+P+A L+WFPFVS FQ RL+F
Sbjct: 30879 FSFFQIASAWKPVVKRMGLWKSIRSIARLYDAGMGMLIFIPIAFLSWFPFVSTFQTRLMF 31058
Query: 218 NQAFSRGLQISRILAG 171
NQAFSRGL+IS ILAG
Sbjct: 31059 NQAFSRGLEISLILAG 31106
>gb|CK096914.1|CK096914 UB32BPD05.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB32BPD05 3', mRNA sequence
Length = 579
Score = 112 bits (240), Expect = 9e-025
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = -3 / -3
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
TGW ++ I+QA++P I+ GLW + L+R Y+Y M +V+F PVAVLAW P +S FQ R
Sbjct: 367 TGWGLILIAQAARPKIEETGLWHFTRVLARAYDYGMSVVLFAPVAVLAWLPVISAFQTRF 188
Query: 224 LFNQAFSRGLQISRILAGGKKQR 156
LFN+AF+R LQI ILAG K ++
Sbjct: 187 LFNEAFNRHLQIQPILAGKKTKQ 119
>gb|DN493190.1|DN493190 X068E11.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X068E11 3', mRNA sequence
Length = 807
Score = 111 bits (236), Expect = 3e-024
Identities = 46/74 (62%), Positives = 59/74 (79%)
Frame = -3 / -3
Query: 386 QISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAF 207
QI+ A K ++ + GLW SV+ +R Y+ MG++IFVP+A L+WFPFVS FQ+RLLFNQAF
Sbjct: 640 QIAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFVSTFQSRLLFNQAF 461
Query: 206 SRGLQISRILAGGK 165
SRGL+IS ILAG K
Sbjct: 460 SRGLEISLILAGNK 419
>gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_H22 5', mRNA sequence
Length = 481
Score = 108 bits (231), Expect = 2e-023
Identities = 43/59 (72%), Positives = 51/59 (86%)
Frame = -3 / +3
Query: 332 VKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGLQISRILAGGKKQR 156
V+ L+RGYE +MG+++F PVA LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G +K R
Sbjct: 3 VRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGPRKDR 179
>gb|DN503210.1|DN503210 X068E11.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X068E11 5', mRNA sequence
Length = 524
Score = 108 bits (231), Expect = 2e-023
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = -3 / +3
Query: 386 QISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAF 207
QI+ A K ++ + GLW SV+ +R Y+ MG++IFVP+A L+WFPFVS FQ+RLLFNQAF
Sbjct: 309 QIAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFVSTFQSRLLFNQAF 488
Query: 206 SRGLQISRILAG 171
SRGL+IS ILAG
Sbjct: 489 SRGLEISLILAG 524
>gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_A18 5', mRNA sequence
Length = 536
Score = 105 bits (225), Expect = 1e-022
Identities = 42/56 (75%), Positives = 49/56 (87%)
Frame = -3 / +1
Query: 323 LSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARLLFNQAFSRGLQISRILAGGKKQR 156
L+RGYE +MG+++F PVA LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G +K R
Sbjct: 1 LARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGPRKDR 168
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 222,158,538
Number of Sequences: 369679
Number of extensions: 3086079
Number of successful extensions: 108791
Number of sequences better than 1.0e-020: 42
length of database: 67,802,888
effective HSP length: 50
effective length of database: 49,318,938
effective search space used: 4142790792
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)