TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848982.2.1
(697 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 124 3e-046
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 124 3e-046
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 124 3e-046
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 124 3e-046
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 124 3e-046
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 124 3e-046
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 124 3e-046
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 124 3e-046
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 120 9e-033
gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library... 112 3e-029
gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus t... 110 2e-028
gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Po... 111 6e-028
gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Popul... 55 3e-025
gb|BU884348.1|BU884348 R009D12 Populus root cDNA library Po... 70 7e-025
gb|CV261587.1|CV261587 WS02017.B21_D05 PTxN-IB-N-A-11 Popul... 95 9e-024
gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Po... 105 2e-022
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 124 bits (266), Expect(4) = 3e-046
Identities = 50/80 (62%), Positives = 60/80 (75%)
Frame = +3 / -1
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+Q+ RV CNW G + F VD+GSN Y A
Sbjct: 593 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFA 414
Query: 222 MAIEYESGDGDLRAXELKQS 281
+EYE GDG+L++ ELKQ+
Sbjct: 413 TVVEYEDGDGELKSVELKQA 354
Score = 54.7 bits (113), Expect(4) = 3e-046
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3 / -1
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VAS VIPAGW PG+TYRS+VNF
Sbjct: 242 SGKTIVASGVIPAGWAPGQTYRSLVNF 162
Score = 40.0 bits (81), Expect(4) = 3e-046
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -1
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 341 SWVPMQKSWGAVWKLDAGS 285
Score = 22.1 bits (42), Expect(4) = 3e-046
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3 / -1
Query: 354 LQAPLSVRLTS 386
L+APLS++LTS
Sbjct: 281 LRAPLSIKLTS 249
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 124 bits (266), Expect(4) = 3e-046
Identities = 50/80 (62%), Positives = 60/80 (75%)
Frame = +3 / -3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+Q+ RV CNW G + F VD+GSN Y A
Sbjct: 645 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFA 466
Query: 222 MAIEYESGDGDLRAXELKQS 281
+EYE GDG+L++ ELKQ+
Sbjct: 465 TVVEYEDGDGELKSVELKQA 406
Score = 54.7 bits (113), Expect(4) = 3e-046
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3 / -3
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VAS VIPAGW PG+TYRS+VNF
Sbjct: 294 SGKTIVASGVIPAGWAPGQTYRSLVNF 214
Score = 40.0 bits (81), Expect(4) = 3e-046
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -3
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 393 SWVPMQKSWGAVWKLDAGS 337
Score = 22.1 bits (42), Expect(4) = 3e-046
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3 / -3
Query: 354 LQAPLSVRLTS 386
L+APLS++LTS
Sbjct: 333 LRAPLSIKLTS 301
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 124 bits (266), Expect(4) = 3e-046
Identities = 50/80 (62%), Positives = 60/80 (75%)
Frame = +3 / -2
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+Q+ RV CNW G + F VD+GSN Y A
Sbjct: 593 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFA 414
Query: 222 MAIEYESGDGDLRAXELKQS 281
+EYE GDG+L++ ELKQ+
Sbjct: 413 TVVEYEDGDGELKSVELKQA 354
Score = 54.7 bits (113), Expect(4) = 3e-046
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3 / -2
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VAS VIPAGW PG+TYRS+VNF
Sbjct: 242 SGKTIVASGVIPAGWAPGQTYRSLVNF 162
Score = 40.0 bits (81), Expect(4) = 3e-046
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -2
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 341 SWVPMQKSWGAVWKLDAGS 285
Score = 22.1 bits (42), Expect(4) = 3e-046
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3 / -2
Query: 354 LQAPLSVRLTS 386
L+APLS++LTS
Sbjct: 281 LRAPLSIKLTS 249
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 124 bits (266), Expect(4) = 3e-046
Identities = 50/80 (62%), Positives = 60/80 (75%)
Frame = +3 / -1
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+Q+ RV CNW G + F VD+GSN Y A
Sbjct: 573 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFA 394
Query: 222 MAIEYESGDGDLRAXELKQS 281
+EYE GDG+L++ ELKQ+
Sbjct: 393 TVVEYEDGDGELKSVELKQA 334
Score = 54.7 bits (113), Expect(4) = 3e-046
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3 / -1
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VAS VIPAGW PG+TYRS+VNF
Sbjct: 222 SGKTIVASGVIPAGWAPGQTYRSLVNF 142
Score = 40.0 bits (81), Expect(4) = 3e-046
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -1
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 321 SWVPMQKSWGAVWKLDAGS 265
Score = 22.1 bits (42), Expect(4) = 3e-046
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3 / -1
Query: 354 LQAPLSVRLTS 386
L+APLS++LTS
Sbjct: 261 LRAPLSIKLTS 229
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 124 bits (266), Expect(4) = 3e-046
Identities = 50/80 (62%), Positives = 60/80 (75%)
Frame = +3 / -3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+Q+ RV CNW G + F VD+GSN Y A
Sbjct: 572 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFA 393
Query: 222 MAIEYESGDGDLRAXELKQS 281
+EYE GDG+L++ ELKQ+
Sbjct: 392 TVVEYEDGDGELKSVELKQA 333
Score = 54.7 bits (113), Expect(4) = 3e-046
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3 / -3
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VAS VIPAGW PG+TYRS+VNF
Sbjct: 221 SGKTIVASGVIPAGWAPGQTYRSLVNF 141
Score = 40.0 bits (81), Expect(4) = 3e-046
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -3
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 320 SWVPMQKSWGAVWKLDAGS 264
Score = 22.1 bits (42), Expect(4) = 3e-046
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3 / -3
Query: 354 LQAPLSVRLTS 386
L+APLS++LTS
Sbjct: 260 LRAPLSIKLTS 228
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 124 bits (266), Expect(4) = 3e-046
Identities = 50/80 (62%), Positives = 60/80 (75%)
Frame = +3 / -1
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+Q+ RV CNW G + F VD+GSN Y A
Sbjct: 669 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFA 490
Query: 222 MAIEYESGDGDLRAXELKQS 281
+EYE GDG+L++ ELKQ+
Sbjct: 489 TVVEYEDGDGELKSVELKQA 430
Score = 54.7 bits (113), Expect(4) = 3e-046
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3 / -1
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VAS VIPAGW PG+TYRS+VNF
Sbjct: 318 SGKTIVASGVIPAGWAPGQTYRSLVNF 238
Score = 40.0 bits (81), Expect(4) = 3e-046
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -1
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 417 SWVPMQKSWGAVWKLDAGS 361
Score = 22.1 bits (42), Expect(4) = 3e-046
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3 / -1
Query: 354 LQAPLSVRLTS 386
L+APLS++LTS
Sbjct: 357 LRAPLSIKLTS 325
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 124 bits (266), Expect(4) = 3e-046
Identities = 50/80 (62%), Positives = 60/80 (75%)
Frame = +3 / -2
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+Q+ RV CNW G + F VD+GSN Y A
Sbjct: 597 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFA 418
Query: 222 MAIEYESGDGDLRAXELKQS 281
+EYE GDG+L++ ELKQ+
Sbjct: 417 TVVEYEDGDGELKSVELKQA 358
Score = 54.7 bits (113), Expect(4) = 3e-046
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3 / -2
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VAS VIPAGW PG+TYRS+VNF
Sbjct: 246 SGKTIVASGVIPAGWAPGQTYRSLVNF 166
Score = 40.0 bits (81), Expect(4) = 3e-046
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -2
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 345 SWVPMQKSWGAVWKLDAGS 289
Score = 22.1 bits (42), Expect(4) = 3e-046
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3 / -2
Query: 354 LQAPLSVRLTS 386
L+APLS++LTS
Sbjct: 285 LRAPLSIKLTS 253
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 124 bits (266), Expect(4) = 3e-046
Identities = 50/80 (62%), Positives = 60/80 (75%)
Frame = +3 / +3
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+++ RV CNW G + F VD+GSN Y A
Sbjct: 81 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFA 260
Query: 222 MAIEYESGDGDLRAXELKQS 281
+EYE GDGDL++ ELKQ+
Sbjct: 261 TLVEYEDGDGDLKSVELKQA 320
Score = 54.7 bits (113), Expect(4) = 3e-046
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3 / +3
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VAS VIPAGW PG+TYRS+VNF
Sbjct: 432 SGKTIVASGVIPAGWAPGQTYRSLVNF 512
Score = 40.0 bits (81), Expect(4) = 3e-046
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / +3
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 333 SWVPMQKSWGAVWKLDAGS 389
Score = 22.1 bits (42), Expect(4) = 3e-046
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 354 LQAPLSVRLTS 386
L+APLS++LTS
Sbjct: 393 LRAPLSIKLTS 425
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 120 bits (256), Expect(2) = 9e-033
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = +3 / +2
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+Q+ RV CNW G + F VD+GSN Y A
Sbjct: 446 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFA 625
Query: 222 MAIEYESGDGDLRAXELKQ 278
+EYE GDG+L++ EL +
Sbjct: 626 TVVEYEDGDGELKSVELNR 682
Score = 40.0 bits (81), Expect(2) = 9e-033
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / +1
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 697 SWVPMQKSWGAVWKLDAGS 753
>gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 493
Score = 112 bits (240), Expect(2) = 3e-029
Identities = 43/93 (46%), Positives = 59/93 (63%)
Frame = +3 / +1
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA G+ QLRN G + V Y R CN+ G +IAF V+ GS +L++ +
Sbjct: 67 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCNYPGKNIAFHVNEGSTDYWLSILV 246
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
E+E GDGD+ + ++++G W M WGA W
Sbjct: 247 EFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 345
Score = 35.4 bits (71), Expect(2) = 3e-029
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T +GR L A VIP W P TY S +NF
Sbjct: 394 TLTTGRTLSAREVIPRNWTPKATYTSRLNF 483
>gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_J04 3', mRNA sequence
Length = 913
Score = 110 bits (234), Expect(2) = 2e-028
Identities = 42/93 (45%), Positives = 58/93 (62%)
Frame = +3 / -2
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA G+ QLRN G + V Y R C + G +IAF V+ GS +L++ +
Sbjct: 798 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSILV 619
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
E+E GDGD+ + ++++G W M WGA W
Sbjct: 618 EFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 520
Score = 35.4 bits (71), Expect(2) = 2e-028
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3 / -2
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T +GR L A VIP W P TY S +NF
Sbjct: 471 TLTTGRTLSAREVIPRNWAPKATYTSRLNF 382
>gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 767
Score = 111 bits (237), Expect(2) = 6e-028
Identities = 43/93 (46%), Positives = 58/93 (62%)
Frame = +3 / +1
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAI 230
HFDLSG AFG MA G+ QLRN G L V Y R C + G +IAF V+ GS +L++ +
Sbjct: 220 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLV 399
Query: 231 EYESGDGDLRAXELKQSGAAAWAPMQRSWGAVW 329
E+E GDGD+ + ++++G W M WGA W
Sbjct: 400 EFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 498
Score = 32.7 bits (65), Expect(2) = 6e-028
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T + R L A VIP W P TY S +NF
Sbjct: 547 TLSTRRTLSAREVIPRNWAPKATYTSRLNF 636
>gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_I10 3', mRNA sequence
Length = 458
Score = 54.7 bits (113), Expect(4) = 3e-025
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3 / -1
Query: 390 SGRVLVASNVIPAGWQPGRTYRSVVNF 470
SG+ +VAS VIPAGW PG+TYRS+VNF
Sbjct: 242 SGKTIVASGVIPAGWAPGQTYRSLVNF 162
Score = 52.8 bits (109), Expect(4) = 3e-025
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3 / -1
Query: 177 IAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQS 281
+ F VD+GSN Y A +EYE GDG+L++ ELKQ+
Sbjct: 458 VTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQA 354
Score = 40.0 bits (81), Expect(4) = 3e-025
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3 / -1
Query: 291 AWAPMQRSWGAVWQYKSGS 347
+W PMQ+SWGAVW+ +GS
Sbjct: 341 SWVPMQKSWGAVWKLDAGS 285
Score = 22.1 bits (42), Expect(4) = 3e-025
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3 / -1
Query: 354 LQAPLSVRLTS 386
L+APLS++LTS
Sbjct: 281 LRAPLSIKLTS 249
>gb|BU884348.1|BU884348 R009D12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 663
Score = 70.3 bits (147), Expect(3) = 7e-025
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +3 / +1
Query: 141 YIRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDGDLRAXELKQSGAAAWAPMQRSWG 320
+ R C + G +IAF V+ GS +L++ +E+E GDGD+ + ++++G W M WG
Sbjct: 313 FCRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREAGGTEWLEMNHVWG 492
Query: 321 AVW 329
A W
Sbjct: 493 ATW 501
Score = 47.3 bits (97), Expect(3) = 7e-025
Identities = 21/33 (63%), Positives = 22/33 (66%)
Frame = +3 / +2
Query: 51 HFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIR 149
HFDLSG AFG MA G+ QLRN G L V Y R
Sbjct: 47 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRR 145
Score = 36.3 bits (73), Expect(3) = 7e-025
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3 / +1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T +GR L A VIP W P TY S +NF
Sbjct: 550 TLSTGRTLSAREVIPRNWAPKATYTSRLNF 639
>gb|CV261587.1|CV261587 WS02017.B21_D05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02017_D05 3', mRNA sequence
Length = 803
Score = 94.5 bits (200), Expect(2) = 9e-024
Identities = 36/86 (41%), Positives = 52/86 (60%)
Frame = +3 / -1
Query: 72 AFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLAMAIEYESGDG 251
AFG MA G+ QLRN G + V Y R C + G +IAF V+ GS +L++ +E+E GDG
Sbjct: 800 AFGRMAISGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSILVEFEDGDG 621
Query: 252 DLRAXELKQSGAAAWAPMQRSWGAVW 329
D+ + ++++G W M WGA W
Sbjct: 620 DVGSMHIREAGGTEWLEMNHVWGATW 543
Score = 35.4 bits (71), Expect(2) = 9e-024
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3 / -1
Query: 381 TSGSGRVLVASNVIPAGWQPGRTYRSVVNF 470
T +GR L A VIP W P TY S +NF
Sbjct: 494 TLTTGRTLSAREVIPRNWAPKATYTSRLNF 405
>gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B10 5', mRNA sequence
Length = 639
Score = 105 bits (225), Expect = 2e-022
Identities = 43/71 (60%), Positives = 51/71 (71%)
Frame = +3 / +2
Query: 42 EPVHFDLSGTAFGAMAKPGQADQLRNAGRLQVQYIRVACNWNGLDIAFRVDAGSNANYLA 221
E HFDLSGTAFGAMA G+ DQLRNAG LQ+++ RV CNW G + F VD+GSN Y A
Sbjct: 425 ESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKKVTFHVDSGSNPYYFA 604
Query: 222 MAIEYESGDGD 254
+E + GDGD
Sbjct: 605 TLVE*QHGDGD 637
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 299,239,740
Number of Sequences: 369679
Number of extensions: 3629100
Number of successful extensions: 38718
Number of sequences better than 1.0e-020: 16
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8695744820
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)