TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802485.2.1
(1118 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU824862.1|BU824862 UK100G03 Populus apical shoot cDNA l... 253 1e-066
gb|CK101166.1|CK101166 F026P50.5pR Populus flower cDNA libr... 160 4e-063
gb|BU882336.1|BU882336 UM75TF08 Populus flower cDNA library... 242 4e-063
gb|CX169203.1|CX169203 A10_69-115_02.ab1 leaf inoculated wi... 229 2e-059
gb|CF231742.1|CF231742 PtaC0025B9B0903 Poplar cDNA library ... 226 3e-058
gb|DT471984.1|DT471984 WS0122.BR_L10 PT-GT-FL-A-3 Populus t... 221 5e-057
gb|BU830604.1|BU830604 T010F10 Populus apical shoot cDNA li... 210 1e-053
gb|CK100280.1|CK100280 C017P25.5pR Populus strain T89 leave... 201 6e-052
gb|BI070287.1|BI070287 C017P25U Populus strain T89 leaves P... 171 1e-041
gb|CX186065.1|CX186065 B07_45-75_03.ab1 leaf inoculated wit... 161 8e-039
gb|BU835070.1|BU835070 T069B10 Populus apical shoot cDNA li... 144 7e-034
gb|CK090820.1|CK090820 F026P50.3pR Populus flower cDNA libr... 102 3e-028
gb|BI068579.1|BI068579 C024P11U Populus strain T89 leaves P... 79 1e-027
gb|DV464317.1|DV464317 MTUNUL1.P25.H12 NUL Populus fremonti... 112 3e-024
gb|DT490816.1|DT490816 WS02546.C21.1_A16 PT-MB-N-A-15 Popul... 104 1e-021
>gb|BU824862.1|BU824862 UK100G03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 577
Score = 253 bits (548), Expect = 1e-066
Identities = 106/175 (60%), Positives = 132/175 (75%)
Frame = +2 / +2
Query: 482 GDLVSGMFCWAHSLFPTLCAKSSGNPLARDLVLQLLERILSVTKARSILLNGAVRKGERL 661
GDLV G++ W LFP L KSS NP +RDL+LQL ERILS KAR+ILLNGAV+KGERL
Sbjct: 2 GDLVVGLYTWIRVLFPMLSGKSSSNPQSRDLILQLAERILSSPKARTILLNGAVKKGERL 181
Query: 662 VPPVSFDLFMRATFPVSNARVKATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCA 841
VPP + +L MR TFPV +ARVKATERFEA YP +KE+ALAG GSK +KQ +QQ+L +
Sbjct: 182 VPPSALELLMRLTFPVPSARVKATERFEAVYPTLKEVALAGSSGSKAMKQVTQQILNIAV 361
Query: 842 KAMQENNAELTREAVDVFIWCLTQNAESYKXXERIYLENIEAXXAVLSKVVIDWR 1006
KA E ++EL+REA D+FIWCLTQ+ SYK E YL+N+EA VL ++ +W+
Sbjct: 362 KATGEGSSELSREASDIFIWCLTQSPNSYKQWEMFYLDNLEASVTVLRRLSDEWK 526
Score = 163 bits (351), Expect = 2e-039
Identities = 86/162 (53%), Positives = 96/162 (59%)
Frame = -3 / -2
Query: 966 ASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPG 787
AS SR* +S CL VKHQ+K S ASL SS L S +A CC CF P
Sbjct: 486 ASRLSR*NISHCL*LLGLCVKHQIKMSLASLDSSELPSPVALTAMFNICCVTCFIALLPE 307
Query: 786 GPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERALV 607
PARA S +G* ASNLSVA T A TG V+L+ S GGTKRSPFLTAPFN I RAL
Sbjct: 306 EPARATSFKVG*TASNLSVALTLAEGTGKVSLIKSSRAEGGTKRSPFLTAPFNKIVRALG 127
Query: 606 TDKILSSNCKTKSLARGFPLDFAHNVGNRE*AQQNMPDTRSP 481
DKILS+NC KSL G LDF ++G R P T+SP
Sbjct: 126 DDKILSANCNIKSLD*GLLLDFPLSIGKRTRIHVYNPTTKSP 1
>gb|CK101166.1|CK101166 F026P50.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F026P50 5', mRNA sequence
Length = 628
Score = 160 bits (344), Expect(2) = 4e-063
Identities = 69/122 (56%), Positives = 92/122 (75%)
Frame = +2 / +3
Query: 548 SGNPLARDLVLQLLERILSVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVK 727
S NP +RD++LQ +E+IL+ KARSIL+NGAVRKGERL+PP + ++ +R TFP S+AR+K
Sbjct: 198 SSNPQSRDIILQSVEKILAAPKARSILVNGAVRKGERLLPPSALEILLRVTFPSSSARLK 377
Query: 728 ATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCL 907
ATERF A YP +KE+ALAG P SK +KQ SQQ+L L K + E+ EL++EA + CL
Sbjct: 378 ATERFGAIYPTLKEVALAGAPRSKAMKQVSQQILSLL*KQLAESVPELSKEAAGIPSGCL 557
Query: 908 TQ 913
Q
Sbjct: 558 PQ 563
Score = 112 bits (239), Expect(2) = 3e-034
Identities = 57/120 (47%), Positives = 67/120 (55%)
Frame = -3 / -1
Query: 906 KHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPGGPARANSLIIG*AASNLSVA 727
KH ASL +S S F K CCD CF G PARA S +G* A NLSVA
Sbjct: 556 KHPDGMPAASLDNSGTLSASCF*SKLSICCDTCFIALLLGAPARATSFRVG*IAPNLSVA 377
Query: 726 FTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERALVTDKILSSNCKTKSLARGFPL 547
F+ A + G V + S+ GG+KRSPFLTAPF NI+ A KI S++CK SL G L
Sbjct: 376 FSLAEDEGKVTRNSISSAEGGSKRSPFLTAPFTNIDLAFGAAKIFSTDCKIISLDCGLEL 197
Score = 102 bits (217), Expect(2) = 4e-063
Identities = 40/67 (59%), Positives = 51/67 (76%)
Frame = +2 / +3
Query: 350 VLAMTLRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQGDLVSGMFCWAHSLFP 529
VLAM LRRKPD LVNV+P + ++KY GQ+KL +IVW+IAQAS GDL G++ W H+L P
Sbjct: 3 VLAMVLRRKPDALVNVLPTLRESSKYQGQDKLVVIVWMIAQASHGDLAVGLYSWGHNLLP 182
Query: 530 TLCAKSS 550
+ KSS
Sbjct: 183 IVSGKSS 203
Score = 53.8 bits (111), Expect(2) = 3e-034
Identities = 27/61 (44%), Positives = 33/61 (54%)
Frame = -3 / -1
Query: 531 VGNRE*AQQNMPDTRSP*EA*AITQTMMGSFSCPRYLLFPIIFGITFTSTSGFLLKVMAR 352
+G R * Q+ P +SP*EA AI T+ S SCP Y + G T T SGF +AR
Sbjct: 184 IGRRL*PQEYNPTAKSP*EACAIIHTITTSLSCP*YFELSLSVGNTLTKASGFRRNTIAR 5
Query: 351 T 349
T
Sbjct: 4 T 2
>gb|BU882336.1|BU882336 UM75TF08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 587
Score = 242 bits (522), Expect = 4e-063
Identities = 101/166 (60%), Positives = 125/166 (75%)
Frame = +2 / +1
Query: 509 WAHSLFPTLCAKSSGNPLARDLVLQLLERILSVTKARSILLNGAVRKGERLVPPVSFDLF 688
W LFP L KSS NP +RDL+LQL+ERILS KAR+ILLNGAV+KGERLVPP + +L
Sbjct: 1 WIRVLFPMLSGKSSSNPQSRDLILQLVERILSSPKARTILLNGAVKKGERLVPPSALELL 180
Query: 689 MRATFPVSNARVKATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAE 868
MR TFPV +ARVKATERFEA YP +KE+ALAG GSK +KQ QQ+L + KA E ++E
Sbjct: 181 MRLTFPVPSARVKATERFEAVYPTLKEVALAGSSGSKAMKQVPQQILNIAVKATGEGSSE 360
Query: 869 LTREAVDVFIWCLTQNAESYKXXERIYLENIEAXXAVLSKVVIDWR 1006
L+REA D+FIWCLTQN SYK + YL+N+EA VL ++ +W+
Sbjct: 361 LSREASDIFIWCLTQNPNSYKQWDMFYLDNLEASVTVLRRLSNEWK 498
Score = 164 bits (352), Expect = 1e-039
Identities = 84/149 (56%), Positives = 93/149 (62%)
Frame = -3 / -1
Query: 966 ASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPG 787
AS SR* +S CL F VKHQ+K S ASL SS L S +A CC CF P
Sbjct: 458 ASRLSR*NMSHCL*LLGFCVKHQIKMSLASLDSSELPSPVALTAMFNICCGTCFIALLPE 279
Query: 786 GPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERALV 607
PARA S +G* ASNLSVA T A TG V+L+ S GGTKRSPFLTAPFN I RAL
Sbjct: 278 EPARATSFKVG*TASNLSVALTLAEGTGKVSLIKSSRAEGGTKRSPFLTAPFNKIVRALG 99
Query: 606 TDKILSSNCKTKSLARGFPLDFAHNVGNR 520
DKILS+NCK KSL G LDF ++G R
Sbjct: 98 DDKILSTNCKIKSLD*GLLLDFPLSIGKR 12
>gb|CX169203.1|CX169203 A10_69-115_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 690
Score = 229 bits (495), Expect = 2e-059
Identities = 96/155 (61%), Positives = 120/155 (77%)
Frame = +2 / +1
Query: 542 KSSGNPLARDLVLQLLERILSVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNAR 721
KSS NP +RDL+LQL+ERILS KAR+ILLNGAV+KGERLVPP + +L MR TFPV +AR
Sbjct: 13 KSSSNPQSRDLILQLVERILSSPKARTILLNGAVKKGERLVPPSALELLMRLTFPVPSAR 192
Query: 722 VKATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIW 901
VKATERFEA YP +KE+ALAG GSK +KQ QQ+L + KA E ++EL+REA D+FIW
Sbjct: 193 VKATERFEAVYPTLKEVALAGSSGSKAMKQVPQQILNIAVKATGEGSSELSREASDIFIW 372
Query: 902 CLTQNAESYKXXERIYLENIEAXXAVLSKVVIDWR 1006
CLTQN SYK + YL+N+EA VL ++ +W+
Sbjct: 373 CLTQNPNSYKQWDMFYLDNLEASVTVLRRLSNEWK 477
Score = 159 bits (341), Expect = 4e-038
Identities = 82/142 (57%), Positives = 89/142 (62%)
Frame = -3 / -2
Query: 966 ASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPG 787
AS SR* +S CL F VKHQ+K S ASL SS L S +A CC CF P
Sbjct: 437 ASRLSR*NMSHCL*LLGFCVKHQIKMSLASLDSSELPSPVALTAMFNICCGTCFIALLPE 258
Query: 786 GPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERALV 607
PARA S +G* ASNLSVA T A TG V+L+ S GGTKRSPFLTAPFN I RAL
Sbjct: 257 EPARATSFKVG*TASNLSVALTLAEGTGKVSLIKSSRAEGGTKRSPFLTAPFNKIVRALG 78
Query: 606 TDKILSSNCKTKSLARGFPLDF 541
DKILS+NCK KSL G LDF
Sbjct: 77 DDKILSTNCKIKSLD*GLLLDF 12
>gb|CF231742.1|CF231742 PtaC0025B9B0903 Poplar cDNA library from cambial zone Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 693
Score = 226 bits (487), Expect = 3e-058
Identities = 95/155 (61%), Positives = 119/155 (76%)
Frame = +2 / +3
Query: 542 KSSGNPLARDLVLQLLERILSVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNAR 721
KSS NP +RDL+LQL ERILS KAR+ILLNGAV+KGERLVPP + +L MR TFPV +AR
Sbjct: 6 KSSSNPQSRDLILQLAERILSSPKARTILLNGAVKKGERLVPPSALELLMRLTFPVPSAR 185
Query: 722 VKATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIW 901
VKAT RFEA YP +KE+ALAG GSK +KQ +QQ+L + KA E ++EL+REA D+FIW
Sbjct: 186 VKATXRFEAVYPALKEVALAGSSGSKAMKQVTQQILNIAVKATGEGSSELSREASDIFIW 365
Query: 902 CLTQNAESYKXXERIYLENIEAXXAVLSKVVIDWR 1006
CLTQ+ SYK E YL+N+EA VL ++ +W+
Sbjct: 366 CLTQSPSSYKQWEMFYLDNLEASVTVLRRLSDEWK 470
Score = 151 bits (324), Expect = 8e-036
Identities = 80/142 (56%), Positives = 86/142 (60%)
Frame = -3 / -3
Query: 966 ASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPG 787
AS SR* +S CL VKHQ+K S ASL SS L S +A CC CF P
Sbjct: 430 ASRLSR*NISHCL*LLGLCVKHQIKMSLASLDSSELPSPVALTAMFNICCVTCFIALLPE 251
Query: 786 GPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERALV 607
PARA S G* ASNLSVA T A TG V+L+ S GGTKRSPFLTAPFN I RAL
Sbjct: 250 EPARATSFKAG*TASNLSVALTLAEGTGKVSLIKSSRAEGGTKRSPFLTAPFNKIVRALG 71
Query: 606 TDKILSSNCKTKSLARGFPLDF 541
DKILS+NC KSL G LDF
Sbjct: 70 DDKILSANCNIKSLD*GLLLDF 5
>gb|DT471984.1|DT471984 WS0122.BR_L10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_L10 5', mRNA sequence
Length = 584
Score = 221 bits (478), Expect = 5e-057
Identities = 95/144 (65%), Positives = 114/144 (79%)
Frame = +2 / +2
Query: 302 KKVAQQSPRAQVAIFVVLAMTLRRKPDVLVNVMPKIMGNNKYLGQEKLPIIVWVIAQASQ 481
K V Q ++ VAIFVVLAM L+RKPDVL+N++P I N KY GQ+KLP+ VW+IAQASQ
Sbjct: 152 KVVQQSPSKSLVAIFVVLAMALQRKPDVLINLLPVISENPKYQGQDKLPVTVWMIAQASQ 331
Query: 482 GDLVSGMFCWAHSLFPTLCAKSSGNPLARDLVLQLLERILSVTKARSILLNGAVRKGERL 661
GDLV G++ W LFP L KSS NP +RDL+LQL+ERILS KAR+ILLNGAV+KGERL
Sbjct: 332 GDLVVGLYMWIRVLFPMLSGKSSSNPQSRDLILQLIERILSSPKARTILLNGAVKKGERL 511
Query: 662 VPPVSFDLFMRATFPVSNARVKAT 733
VPP + +L MR TFPV +ARVKAT
Sbjct: 512 VPPSALELLMRVTFPVPSARVKAT 583
Score = 149 bits (321), Expect(2) = 5e-039
Identities = 76/144 (52%), Positives = 86/144 (59%)
Frame = -3 / -3
Query: 732 VAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERALVTDKILSSNCKTKSLARGF 553
VA T A TG V L+ S GGTKRSPFLTAPFN I RAL DKILS NCK KSL G
Sbjct: 582 VALTLAEGTGKVTLIKSSRAEGGTKRSPFLTAPFNKIVRALGDDKILSINCKIKSLD*GL 403
Query: 552 PLDFAHNVGNRE*AQQNMPDTRSP*EA*AITQTMMGSFSCPRYLLFPIIFGITFTSTSGF 373
LDF ++G R P T+SP*EA*AI T+ GS SCP Y F +I G +TSG
Sbjct: 402 LLDFPLSIGKRTRIHMYNPTTKSP*EA*AIIHTVTGSLSCP*YFGFSLITGNKLINTSGL 223
Query: 372 LLKVMARTTKIATWALGDCCATFF 301
+A+TT +AT L C T F
Sbjct: 222 RCNAIAKTTNMATRDLDGDCWTTF 151
Score = 81.7 bits (172), Expect(2) = 1e-031
Identities = 34/67 (50%), Positives = 43/67 (64%)
Frame = +2 / +2
Query: 155 LCHIPEAVIKTASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGPKGSKKVAQQSPRAQ 334
L HI + V KTA DW+ QRS +ALG FVLW +DSI ++L+ KGSKKV QQSP
Sbjct: 2 LAHISQDVYKTAVDWLGQRSLEALGSFVLWSVDSIFADLASHQGVTKGSKKVVQQSPSKS 181
Query: 335 VAIFVVL 355
+ V+
Sbjct: 182 LVAIFVV 202
Score = 75.8 bits (159), Expect(2) = 1e-031
Identities = 44/123 (35%), Positives = 65/123 (52%)
Frame = +1 / +1
Query: 334 GCNLCCSCHDFKKKA*CTGKCYAKDNGKQ*ISGTGKASHHCLGYCSGLSR*PSVWHVLLG 513
GC++C + +A* + A + K IS T +AS HC+ CSG SR V +
Sbjct: 184 GCHICGFGNGITTQA*RVDQFIAGNQ*KSKISRTRQASGHCMDDCSGFSRRFGCGIVHVD 363
Query: 514 SFSISHIMCEVKWESPCKRFGFAVA*KNFVCHQSSFYIIEWCC*KGRTLSSPCFI*LVHE 693
S S+ + ++K S +R AV *+N + QSS+ I+WCC*KG LS+ * E
Sbjct: 364 SCSLPYAEWKIKQ*SSIQRLDLAVD*ENLIIPQSSYNFIKWCC*KG*ALSTTFCS*AFDE 543
Query: 694 SHI 702
S++
Sbjct: 544 SNL 552
Score = 32.2 bits (64), Expect(2) = 5e-039
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = -2 / -2
Query: 325 WRLLCNLL*TLRAS*WT*QFRHDAIYTPQNKVSQGIRRSLTDPITRSLDDSLRNMAQ 155
WRLL +L +L S T + +A++ P +K + +RSL P+ L + LR++ +
Sbjct: 172 WRLLDHLFGSLGNSLMTCKVSENAVH*P*HKGPKCFKRSLAKPVNCRLVNILRDVCE 2
>gb|BU830604.1|BU830604 T010F10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 764
Score = 210 bits (453), Expect = 1e-053
Identities = 88/144 (61%), Positives = 111/144 (77%)
Frame = +2 / +2
Query: 575 VLQLLERILSVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVKATERFEAAY 754
+LQL ERILS KAR+ILLNGAV+KGERLVPP + +L MR TFPV +ARVKATERFEA Y
Sbjct: 2 ILQLAERILSSPKARTILLNGAVKKGERLVPPSALELLMRLTFPVPSARVKATERFEAVY 181
Query: 755 PMIKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKX 934
P +KE+ALAG GSK +KQ +QQ+L + KA E ++EL+REA D+FIWCLTQ+ SYK
Sbjct: 182 PTLKEVALAGSSGSKAMKQVTQQILNIAVKATGEGSSELSREASDIFIWCLTQSPNSYKQ 361
Query: 935 XERIYLENIEAXXAVLSKVVIDWR 1006
E YL+N+EA VL ++ +W+
Sbjct: 362 WEMFYLDNLEASVTVLRRLSDEWK 433
Score = 141 bits (303), Expect = 7e-033
Identities = 73/129 (56%), Positives = 80/129 (62%)
Frame = -3 / -3
Query: 966 ASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPG 787
AS SR* +S CL VKHQ+K S ASL SS L S +A CC CF P
Sbjct: 393 ASRLSR*NISHCL*LLGLCVKHQIKMSLASLDSSELPSPVALTAMFNICCVTCFIALLPE 214
Query: 786 GPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERALV 607
PARA S +G* ASNLSVA T A TG V+L+ S GGTKRSPFLTAPFN I RAL
Sbjct: 213 EPARATSFKVG*TASNLSVALTLAEGTGKVSLIKSSRAEGGTKRSPFLTAPFNKIVRALG 34
Query: 606 TDKILSSNC 580
DKILS+NC
Sbjct: 33 DDKILSANC 7
>gb|CK100280.1|CK100280 C017P25.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C017P25 5', mRNA sequence
Length = 561
Score = 201 bits (433), Expect(2) = 6e-052
Identities = 84/138 (60%), Positives = 106/138 (76%)
Frame = +2 / +1
Query: 593 RILSVTKARSILLNGAVRKGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYPMIKEL 772
RILS KAR+ILLNGAV+KGERLVPP + +L MR TFPV +ARVKATERFEA YP +KE+
Sbjct: 85 RILSSPKARTILLNGAVKKGERLVPPSALELLMRLTFPVPSARVKATERFEAVYPTLKEV 264
Query: 773 ALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKXXERIYL 952
ALAG GSK +KQ +QQ+L + KA E ++EL+REA D+FIWCLTQ+ SYK E YL
Sbjct: 265 ALAGSSGSKAMKQVTQQILNIAVKATGEGSSELSREASDIFIWCLTQSPNSYKQWEMFYL 444
Query: 953 ENIEAXXAVLSKVVIDWR 1006
+N+EA VL ++ +W+
Sbjct: 445 DNLEASVTVLRRLSDEWK 498
Score = 132 bits (283), Expect = 4e-030
Identities = 70/125 (56%), Positives = 76/125 (60%)
Frame = -3 / -2
Query: 966 ASIFSR*ILSXCLYDSAF*VKHQMKTSTASLVSSALFSCIAFAHKGKSCCDACFTVFEPG 787
AS SR* +S CL VKHQ+K S ASL SS L S +A CC CF P
Sbjct: 458 ASRLSR*NISHCL*LLGLCVKHQIKMSLASLDSSELPSPVALTAMFNICCVTCFIALLPE 279
Query: 786 GPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGGTKRSPFLTAPFNNIERALV 607
PARA S +G* ASNLSVA T A TG V+L+ S GGTKRSPFLTAPFN I RAL
Sbjct: 278 EPARATSFKVG*TASNLSVALTLAEGTGKVSLIKSSRAEGGTKRSPFLTAPFNKIVRALG 99
Query: 606 TDKIL 592
DKIL
Sbjct: 98 DDKIL 84
Score = 24.0 bits (46), Expect(2) = 6e-052
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / +3
Query: 521 LFPTLCAKSSGNPLAR 568
LFP L KSS NP ++
Sbjct: 15 LFPMLSGKSSSNPQSK 62
>gb|BI070287.1|BI070287 C017P25U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 390
Score = 171 bits (367), Expect = 1e-041
Identities = 74/108 (68%), Positives = 87/108 (80%)
Frame = +2 / +2
Query: 521 LFPTLCAKSSGNPLARDLVLQLLERILSVTKARSILLNGAVRKGERLVPPVSFDLFMRAT 700
LFP L KSS NP +RDL+LQL ERILS KAR+ILLNGAV+KGERLVPP + +L MR T
Sbjct: 2 LFPMLSGKSSSNPQSRDLILQLAERILSSPKARTILLNGAVKKGERLVPPSALELLMRLT 181
Query: 701 FPVSNARVKATERFEAAYPMIKELALAGPPGSKTVKQASQQLLPLCAK 844
FPV +ARVKATERFEA YP +KE+ALAG GSK +KQ +QQ+L + AK
Sbjct: 182 FPVPSARVKATERFEAVYPTLKEVALAGSSGSKAMKQVTQQILNIAAK 325
Score = 130 bits (279), Expect = 1e-029
Identities = 62/108 (57%), Positives = 68/108 (62%)
Frame = -3 / -1
Query: 843 FAHKGKSCCDACFTVFEPGGPARANSLIIG*AASNLSVAFTRALETGNVALMNKSNETGG 664
FA CC CF P PARA S +G* ASNLSVA T A TG V+L+ S GG
Sbjct: 324 FAAMFNICCVTCFIALLPEEPARATSFKVG*TASNLSVALTLAEGTGKVSLIKSSRAEGG 145
Query: 663 TKRSPFLTAPFNNIERALVTDKILSSNCKTKSLARGFPLDFAHNVGNR 520
TKRSPFLTAPFN I RAL DKILS+NC KSL G LDF ++G R
Sbjct: 144 TKRSPFLTAPFNKIVRALGDDKILSANCNIKSLD*GLLLDFPLSIGKR 1
>gb|CX186065.1|CX186065 B07_45-75_03.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 610
Score = 161 bits (346), Expect = 8e-039
Identities = 66/124 (53%), Positives = 88/124 (70%)
Frame = +2 / +3
Query: 5 ISSSYENQQDIQLMRFADYFGRAFVAVSASQFAWAKMFKESTVSKMVDIPLCHIPEAVIK 184
I++SYE QQDI LMRFADY+GRAF +VS++QF W K+FKES VSK++DIPL HI + V K
Sbjct: 144 ITASYETQQDILLMRFADYYGRAFSSVSSAQFPWLKIFKESPVSKLIDIPLAHISQDVYK 323
Query: 185 TASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGPKGSKKVAQQSPRAQVAIFVVLAMT 364
+ DW+ +RS +ALG FVLW +DSI ++L+ KGSKKV Q+SP + V+
Sbjct: 324 ASVDWLGRRSFEALGSFVLWSLDSIFADLASHQGVAKGSKKVVQRSPSKSLVAIFVVLAM 503
Query: 365 LRRK 376
R+
Sbjct: 504 TLRR 515
>gb|BU835070.1|BU835070 T069B10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 535
Score = 144 bits (310), Expect = 7e-034
Identities = 58/100 (58%), Positives = 75/100 (75%)
Frame = +2 / +2
Query: 5 ISSSYENQQDIQLMRFADYFGRAFVAVSASQFAWAKMFKESTVSKMVDIPLCHIPEAVIK 184
I++SYE QDI LMRFADY+GRAF +VS++QF W K+FKES VSK++DIPL H + V K
Sbjct: 236 ITASYETHQDILLMRFADYYGRAFSSVSSAQFPWLKIFKESPVSKLIDIPLAHXSQDVYK 415
Query: 185 TASDWISQRSSDALGDFVLWCIDSIMSELSGPSAGPKGSK 304
+ DW+ QRS +ALG FVLW +DSI ++L+ KGSK
Sbjct: 416 ASVDWLGQRSFEALGSFVLWSLDSIFADLASHQGVVKGSK 535
>gb|CK090820.1|CK090820 F026P50.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F026P50 3', mRNA sequence
Length = 786
Score = 102 bits (218), Expect(2) = 3e-028
Identities = 40/82 (48%), Positives = 59/82 (71%)
Frame = +2 / -2
Query: 761 IKELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKXXE 940
+KE+ALAG P SK +KQ SQQ+L KA E+ EL++EA + IWCLTQNA+ YK +
Sbjct: 671 LKEVALAGAPRSKAMKQVSQQILSFALKAAGESVPELSKEAAGISIWCLTQNADCYKQWD 492
Query: 941 RIYLENIEAXXAVLSKVVIDWR 1006
++Y +N+EA AVL +++ +W+
Sbjct: 491 KVYQDNLEASVAVLKRLLEEWK 426
Score = 43.2 bits (88), Expect(2) = 3e-028
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2 / -1
Query: 647 KGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYP 757
KGERL+P + +R TFP S+ R+KATER + P
Sbjct: 783 KGERLLPTFGT*ITVRVTFPSSSGRIKATERLGQSIP 673
>gb|BI068579.1|BI068579 C024P11U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 380
Score = 79.0 bits (166), Expect(2) = 1e-027
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = +2 / +1
Query: 791 GSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKXXERIYLENIE 964
GSK +KQ +QQ+L + KA+ E N+EL++EA +FIWCLTQN E YK + YL N++
Sbjct: 121 GSKAMKQVTQQILNISVKAIGEGNSELSKEASGIFIWCLTQNPECYKQWDMFYLHNLK 294
Score = 64.8 bits (135), Expect(2) = 1e-027
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +2 / +2
Query: 674 SFDLFMRATFPVSNARVKATERFEAAYPMIKELALAG 784
+ +L MR TFPV +ARVKATERFEA YP +KE+ALAG
Sbjct: 5 ALELLMRVTFPVPSARVKATERFEAVYPTLKEVALAG 115
>gb|DV464317.1|DV464317 MTUNUL1.P25.H12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 845
Score = 112 bits (240), Expect = 3e-024
Identities = 44/70 (62%), Positives = 56/70 (80%)
Frame = +2 / +3
Query: 5 ISSSYENQQDIQLMRFADYFGRAFVAVSASQFAWAKMFKESTVSKMVDIPLCHIPEAVIK 184
I++SYE QQDI LMRFADY+GRAF +VS++QF W K+FKES VSK++D PL HI + V K
Sbjct: 630 ITASYETQQDILLMRFADYYGRAFSSVSSAQFPWLKIFKESPVSKLIDTPLAHISQDVYK 809
Query: 185 TASDWISQRS 214
+ DW+ QRS
Sbjct: 810 ASVDWLGQRS 839
>gb|DT490816.1|DT490816 WS02546.C21.1_A16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_A16 3', mRNA sequence
Length = 928
Score = 104 bits (222), Expect = 1e-021
Identities = 42/81 (51%), Positives = 57/81 (70%)
Frame = +2 / -2
Query: 764 KELALAGPPGSKTVKQASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKXXER 943
KE+ALAG GSK +KQ QQ+L + KA E ++EL+REA D+FIWCLTQN SYK +
Sbjct: 927 KEVALAGSSGSKAMKQFPQQILNIAVKATVEGSSELSREASDIFIWCLTQNPNSYKQWDM 748
Query: 944 IYLENIEAXXAVLSKVVIDWR 1006
YL+N+EA VL ++ +W+
Sbjct: 747 FYLDNLEASVTVLRRLSNEWK 685
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 538,454,060
Number of Sequences: 369679
Number of extensions: 8364573
Number of successful extensions: 42713
Number of sequences better than 1.0e-020: 17
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 15378958419
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)