TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748394.2.2
(3527 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN500621.1|DN500621 UL69F06.5pR Populus cold stressed le... 442 e-123
gb|CA924040.1|CA924040 MTU7CL.P1.A07 Aspen leaf cDNA Librar... 297 e-106
gb|CX171278.1|CX171278 G09_69-19_13.ab1 leaf inoculated wit... 265 1e-069
gb|CX174846.1|CX174846 B10_69-89_04.ab1 leaf inoculated wit... 265 1e-069
gb|AJ778592.1|AJ778592 AJ778592 Populus euphratica cambium ... 232 2e-059
gb|CX182697.1|CX182697 E08_45-55_10.ab1 leaf inoculated wit... 215 5e-057
gb|CK095962.1|CK095962 UA38BPF06.3pR Populus dormant cambiu... 174 5e-053
gb|BU873883.1|BU873883 Q061A02 Populus flower cDNA library ... 164 4e-050
gb|CK090275.1|CK090275 C084P86.3pR Populus strain T89 leave... 99 9e-050
gb|BU819039.1|BU819039 UA38BPF06 Populus tremula cambium cD... 160 2e-047
gb|BI122326.1|BI122326 I005P20P Populus leaf cDNA library P... 174 1e-046
gb|CV239289.1|CV239289 WS0231.B21_P03 PT-MB-A-13 Populus tr... 163 2e-044
gb|CV244451.1|CV244451 WS0254.B21_L08 PT-MB-N-A-15 Populus ... 163 2e-044
gb|CK100777.1|CK100777 C084P86.5pR Populus strain T89 leave... 133 1e-041
gb|CV283626.1|CV283626 WS0187.B21_N13 PTxD-IL-N-A-9 Populus... 135 2e-041
gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA li... 130 2e-032
gb|AJ773512.1|AJ773512 AJ773512 Populus euphratica shoot 3-... 133 6e-032
gb|CK105779.1|CK105779 UA38BPF06.5pR Populus dormant cambiu... 106 2e-031
gb|DT488170.1|DT488170 WS02535.B21_L05 PT-MB-N-A-15 Populus... 128 2e-028
gb|DT492401.1|DT492401 WS02550.C21_J20 PT-MB-N-A-15 Populus... 128 2e-028
gb|BI072708.1|BI072708 C084P86U Populus strain T89 leaves P... 121 4e-026
gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDN... 105 2e-024
gb|DT477637.1|DT477637 WS02520.BR_I13 PT-MB-N-A-15 Populus ... 112 1e-023
gb|DT482695.1|DT482695 WS02520.B21_I13 PT-MB-N-A-15 Populus... 112 1e-023
gb|CV259899.1|CV259899 WS02012.B21_J06 PTxN-IB-N-A-11 Popul... 108 3e-022
gb|DT483569.1|DT483569 WS02522.B21_P13 PT-MB-N-A-15 Populus... 103 6e-022
gb|AY341026.1| Populus tremuloides sucrose synthase mRNA, c... 71 3e-021
>gb|DN500621.1|DN500621 UL69F06.5pR Populus cold stressed leaves cDNA library Populus tremula
x Populus tremuloides cDNA clone UL69F06 5', mRNA
sequence
Length = 789
Score = 442 bits (959), Expect = e-123
Identities = 177/244 (72%), Positives = 207/244 (84%)
Frame = +1 / +1
Query: 1528 PPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI 1707
P IW E+MRF TN HKPMILAL+RPDPKKNITTLV AFGECRPLRELANLTLIMGNRD I
Sbjct: 34 PSIWIEIMRFFTNSHKPMILALARPDPKKNITTLVTAFGECRPLRELANLTLIMGNRDGI 213
Query: 1708 DDMSAGNASVLTTVLKLIDKYDLYGSVAFPKHHNQADVPEIYRLAAKMKGVFINPALVEP 1887
D+MS+ ++SVL +VLKLIDKYDLYG VA+PKHH Q+DVP+IYRLAAK KGVFINPA +EP
Sbjct: 214 DEMSSTSSSVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEP 393
Query: 1888 FGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPHDQNAIADALLKLVADKNLWQE 2067
FGLTLIEAAAHGLP+VATKNGGPVDI L+NGLLVDPHDQ +IADALLKLVA+K+LW +
Sbjct: 394 FGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVAEKHLWAK 573
Query: 2068 CRRNGLRNIHLYSWPEHCRTYLTRVAGCRLRNPRWLKDTPADAGADEEEFLEDSMDAQDL 2247
CR+NGL+NIH +SWPEHC+ YL+++AGC+ R+P+W K +D + + D QDL
Sbjct: 574 CRQNGLKNIHHFSWPEHCKAYLSKIAGCKPRHPQWQKSDDGADTSDTDSPGDSLRDIQDL 753
Query: 2248 SLRL 2259
SL L
Sbjct: 754 SLNL 765
Score = 227 bits (490), Expect(2) = 4e-064
Identities = 107/158 (67%), Positives = 121/158 (76%)
Frame = -1 / -2
Query: 2000 GSTSSPLFNAFVMSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISG 1821
GST PL + MSTGPPF VATIG+P AAASI+V PNGS +AGLMKTPF+ AA R*+SG
Sbjct: 506 GSTRRPLSSTRCMSTGPPFFVATIGNP*AAASIKVSPNGSMKAGLMKTPFVFAASR*MSG 327
Query: 1820 TSA*L*CLGNATLPYRSYLSISFRTVVRTLALPADMSSMSSLLPMIRVRFASSLSGRHSP 1641
TS L*CLG AT PYRSYLSIS T RT L D+SS+ S LP+IRVR ASSL+GRHSP
Sbjct: 326 TSDCL*CLGYATCPYRSYLSISLSTERRTDELVLDISSIPSRLPIIRVRLASSLNGRHSP 147
Query: 1640 NALTRVVMFFFGSGLDNARIIGL*GLVRNRITSAQIGG 1527
NA+T+VVMFF GSGL A IIGL* LV+ R+ S I G
Sbjct: 146 NAVTKVVMFFLGSGLARASIIGL*ELVKKRMISIHIDG 33
Score = 160 bits (344), Expect = 5e-038
Identities = 77/200 (38%), Positives = 128/200 (64%)
Frame = -3 / -1
Query: 2136 GEVSAAVLRP*VEVDVAQPVSPAFLPQVLVCHKLQQCISDGVLVVWVNEQSVV*CICNVD 1957
G++S A+L P* V+V Q + AF P++L +KLQ+ IS+G+L++ +N++++V V
Sbjct: 642 GKISLAMLWP*KMVNVLQTILTAFCPKMLFSNKLQKSISNGLLIMRINKETIVKYPVYVY 463
Query: 1956 RTTILGSDYRESVCRSLDQGETKRLNESRVDEDALHFGREAIDLRDVSLIVMLRERHASV 1777
+I ++R+S+ L+ ++K LNESR+DE+ L +I++R++ L+VM R + +
Sbjct: 462 WASIFCGNHRQSMSCCLN*SKSKWLNESRIDENTLCLRC*SINVRNIRLLVMFRVCNLPI 283
Query: 1776 QIILVNQLQNCGEDTGIASRHVVDVISVTHDQSKVCKFPEWTTLSKRFDEGSDVLLRVWS 1597
QIILVN+L++ +D + H ++ IS+ H+ SKV K +W T SK D+ DVL +WS
Sbjct: 282 QIILVNKLKHRKKDR*TCAGHFINSISIAHN*SKVSKLSQWPTFSKCCDQSCDVLFGIWS 103
Query: 1596 **RQDHRLVRVGQEPHHFGP 1537
+ HRLVR+G+E H P
Sbjct: 102 CKGKYHRLVRIGKEAHDLYP 43
Score = 84.0 bits (177), Expect(2) = 3e-021
Identities = 50/144 (34%), Positives = 78/144 (54%)
Frame = +3 / +3
Query: 1533 NLGRSDAVPDQPSQADDPGVIKTRPEEEHHYPRQSVWRVSSTQGTCKPYSDHG*QR*HRR 1712
++ R A+ Q SQA D KTR ++EHH S+WR+S+ + C PYS++G R +
Sbjct: 39 DMDRDHALLYQFSQAYDTCPCKTRSQKEHHNFGHSIWRMSAIERAC*PYSNYGQSRWN** 218
Query: 1713 HVCWQCQCPHHSSEAD*QV*SVRKRGVP*ASQSG*RPGDLSPRGQNEGRLHQPCSR*AVW 1892
+V + CP + A *QV*SV +P* SQ+ * LS +++G HQ *A+W
Sbjct: 219 NVQHKFICPSFCA*AY*QV*SVWASCIP*TSQAV*CS*HLSTSSEDKGCFHQSGFH*AIW 398
Query: 1893 SHPDRGCGTRTPDSRYQEWWSGRH 1964
++ + G + +++W RH
Sbjct: 399 TYFN*GSSSWIAYGCHKKWRPSRH 470
Score = 40.5 bits (82), Expect(2) = 4e-064
Identities = 20/39 (51%), Positives = 20/39 (51%)
Frame = -1 / -2
Query: 2171 HLGFLNRHPATLVR*VRQCSGHE*RWMLRSPFLRHSCHR 2055
H G L PA L R* QCSGHE M PF RH R
Sbjct: 677 HCGCLGLQPAILER*ALQCSGHEKW*MFFKPF*RHFAQR 561
Score = 40.0 bits (81), Expect(2) = 3e-021
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3 / +3
Query: 2016 HR*CTAEACGRQEPVAGMPEKRAAQHPPLLMAGALPHLPHQGGRVPVKEPEVAE 2177
H *C++EAC + + MP + +H P MA AL L Q R+ K +A+
Sbjct: 522 HC*CSSEACC*KASLGKMPSEWFEEHSPFFMARALQGLSFQNSRLQTKASTMAK 683
>gb|CA924040.1|CA924040 MTU7CL.P1.A07 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 700
Score = 297 bits (644), Expect(2) = e-106
Identities = 121/146 (82%), Positives = 133/146 (91%)
Frame = +1 / -3
Query: 1528 PPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI 1707
P IW E+MRF TN HKPMILAL+RPDPKKNITTLV AFGECRPLRELANLTLIMGNRD I
Sbjct: 443 PSIWIEIMRFFTNSHKPMILALARPDPKKNITTLVTAFGECRPLRELANLTLIMGNRDGI 264
Query: 1708 DDMSAGNASVLTTVLKLIDKYDLYGSVAFPKHHNQADVPEIYRLAAKMKGVFINPALVEP 1887
D+MS+ ++SVL +VLKLIDKYDLYG VA+PKHH Q+DVP+IYRLAAK KGVFINPA +EP
Sbjct: 263 DEMSSTSSSVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEP 84
Query: 1888 FGLTLIEAAAHGLPIVATKNGGPVDI 1965
FGLTLIEAAAHGLP+VATKNG PVDI
Sbjct: 83 FGLTLIEAAAHGLPMVATKNGSPVDI 6
Score = 215 bits (465), Expect(2) = 1e-065
Identities = 102/146 (69%), Positives = 115/146 (78%)
Frame = -1 / +1
Query: 1964 MSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISGTSA*L*CLGNAT 1785
MSTG PFLVATIG+P AAASI+V PNGS +AGLMKTPF+ AA R*+SGTS L*CLG AT
Sbjct: 7 MSTGLPFLVATIGNP*AAASIKVSPNGSMKAGLMKTPFVFAASR*MSGTSDCL*CLGYAT 186
Query: 1784 LPYRSYLSISFRTVVRTLALPADMSSMSSLLPMIRVRFASSLSGRHSPNALTRVVMFFFG 1605
PYRSYLSIS T RT L D+SS+ S LP+IRVR ASSL+GRHSPNA+T+VVMFF G
Sbjct: 187 CPYRSYLSISLSTERRTDELVLDISSIPSRLPIIRVRLASSLNGRHSPNAVTKVVMFFLG 366
Query: 1604 SGLDNARIIGL*GLVRNRITSAQIGG 1527
SGL A IIGL* LV+ R+ S I G
Sbjct: 367 SGLARASIIGL*ELVKKRMISIHIDG 444
Score = 120 bits (256), Expect(2) = 2e-036
Identities = 55/138 (39%), Positives = 88/138 (63%)
Frame = -3 / +3
Query: 1950 TILGSDYRESVCRSLDQGETKRLNESRVDEDALHFGREAIDLRDVSLIVMLRERHASVQI 1771
+I G ++R+S+ L+ ++K LNESR+DE+ L +I++R++ L+VM R + +QI
Sbjct: 21 SIFGGNHRQSMSCCLN*SKSKWLNESRIDENTLCLRC*SINVRNIRLLVMFRVCNLPIQI 200
Query: 1770 ILVNQLQNCGEDTGIASRHVVDVISVTHDQSKVCKFPEWTTLSKRFDEGSDVLLRVWS** 1591
ILVN+L++ +D + H ++ IS+ H+ SKV K +W T SK D+ DVL +WS
Sbjct: 201 ILVNKLKHRKKDR*TCAGHFINSISIAHN*SKVSKLSQWPTFSKCCDQSCDVLFGIWSCK 380
Query: 1590 RQDHRLVRVGQEPHHFGP 1537
+ HRLVR+G+E H P
Sbjct: 381 GKYHRLVRIGKEAHDLYP 434
Score = 109 bits (233), Expect(2) = e-106
Identities = 43/64 (67%), Positives = 52/64 (81%)
Frame = +1 / -3
Query: 1258 LDASELVITSTRQEIDEQWGLYDGFDVKLEKVLRARARRGVSCHGRYMPRMVVIPPGMDF 1437
LD E+VITSTRQEI+EQW YDGFD LE+ LRAR RR VSC+GR+M RM +IPPGM+F
Sbjct: 698 LDVXEIVITSTRQEIEEQWRXYDGFDPILERKLRARIRRNVSCYGRFMXRMAIIPPGMEF 519
Query: 1438 SNVV 1449
++V
Sbjct: 518 HHIV 507
Score = 57.0 bits (118), Expect(2) = 1e-065
Identities = 29/50 (58%), Positives = 32/50 (64%)
Frame = -1 / +1
Query: 1424 GGITTILGM*RPWQLTPRLARALSTFSSLTSNPSYNPHCSSISCLVLVIT 1275
GGI + M P QLT RL A S SS+ S PS HCSSISCLVLV+T
Sbjct: 532 GGIIAMRXMNLP*QLTLRLILARSLRSSIGSKPSXQRHCSSISCLVLVMT 681
Score = 55.1 bits (114), Expect(2) = 2e-036
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = -3 / +3
Query: 1446 NIAEIHSRRNHHHPRHVTTMAANPAPRPCPQHFLKLDIKSIVQSPLLINLLPCA 1285
N+ ++HSRRN+ H H ++ + P C Q LK IK+I+ +PLL+ LL A
Sbjct: 510 NVMKLHSRRNYSHAXHEPSVTTHVTPDSCSQFTLKYRIKTIIXAPLLLYLLSSA 671
>gb|CX171278.1|CX171278 G09_69-19_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 698
Score = 265 bits (573), Expect = 1e-069
Identities = 104/154 (67%), Positives = 126/154 (81%)
Frame = +1 / +3
Query: 1798 KHHNQADVPEIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNAL 1977
KHH Q+DVP+IYRLAAK KGVFINPA +EPFGLTLIEAAAHGLP+VATKNGGPVDI L
Sbjct: 51 KHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVL 230
Query: 1978 NNGLLVDPHDQNAIADALLKLVADKNLWQECRRNGLRNIHLYSWPEHCRTYLTRVAGCRL 2157
+NGLLVDPHDQ +IADALLKLVA+K+LW +CR+NGL+NIH +SWPEHC+ YL+++AGC+
Sbjct: 231 DNGLLVDPHDQQSIADALLKLVAEKHLWAKCRQNGLKNIHHFSWPEHCKAYLSKIAGCKP 410
Query: 2158 RNPRWLKDTPADAGADEEEFLEDSMDAQDLSLRL 2259
R+P+W K +D + + D QDLSL L
Sbjct: 411 RHPQWQKSDDGADTSDTDSPGDSLRDIQDLSLNL 512
Score = 105 bits (225), Expect(2) = 7e-028
Identities = 48/67 (71%), Positives = 54/67 (80%)
Frame = -1 / -2
Query: 2000 GSTSSPLFNAFVMSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISG 1821
GST PL + MSTGPPFLVATIG+P AAASI+V PNGS +AGLMKTPF+ AA R*+SG
Sbjct: 253 GSTRRPLSSTRCMSTGPPFLVATIGNP*AAASIKVSPNGSMKAGLMKTPFVFAASR*MSG 74
Query: 1820 TSA*L*C 1800
TS L*C
Sbjct: 73 TSDCL*C 53
Score = 40.5 bits (82), Expect(2) = 7e-028
Identities = 20/39 (51%), Positives = 20/39 (51%)
Frame = -1 / -2
Query: 2171 HLGFLNRHPATLVR*VRQCSGHE*RWMLRSPFLRHSCHR 2055
H G L PA L R* QCSGHE M PF RH R
Sbjct: 424 HCGCLGLQPAILER*ALQCSGHEKW*MFFKPF*RHFAQR 308
>gb|CX174846.1|CX174846 B10_69-89_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 680
Score = 265 bits (573), Expect = 1e-069
Identities = 104/154 (67%), Positives = 126/154 (81%)
Frame = +1 / +3
Query: 1798 KHHNQADVPEIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNAL 1977
KHH Q+DVP+IYRLAAK KGVFINPA +EPFGLTLIEAAAHGLP+VATKNGGPVDI L
Sbjct: 33 KHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVL 212
Query: 1978 NNGLLVDPHDQNAIADALLKLVADKNLWQECRRNGLRNIHLYSWPEHCRTYLTRVAGCRL 2157
+NGLLVDPHDQ +IADALLKLVA+K+LW +CR+NGL+NIH +SWPEHC+ YL+++AGC+
Sbjct: 213 DNGLLVDPHDQQSIADALLKLVAEKHLWAKCRQNGLKNIHHFSWPEHCKAYLSKIAGCKP 392
Query: 2158 RNPRWLKDTPADAGADEEEFLEDSMDAQDLSLRL 2259
R+P+W K +D + + D QDLSL L
Sbjct: 393 RHPQWQKSDDGADTSDTDSPGDSLRDIQDLSLNL 494
Score = 105 bits (225), Expect(2) = 7e-028
Identities = 48/67 (71%), Positives = 54/67 (80%)
Frame = -1 / -2
Query: 2000 GSTSSPLFNAFVMSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISG 1821
GST PL + MSTGPPFLVATIG+P AAASI+V PNGS +AGLMKTPF+ AA R*+SG
Sbjct: 235 GSTRRPLSSTRCMSTGPPFLVATIGNP*AAASIKVSPNGSMKAGLMKTPFVFAASR*MSG 56
Query: 1820 TSA*L*C 1800
TS L*C
Sbjct: 55 TSDCL*C 35
Score = 40.5 bits (82), Expect(2) = 7e-028
Identities = 20/39 (51%), Positives = 20/39 (51%)
Frame = -1 / -2
Query: 2171 HLGFLNRHPATLVR*VRQCSGHE*RWMLRSPFLRHSCHR 2055
H G L PA L R* QCSGHE M PF RH R
Sbjct: 406 HCGCLGLQPAILER*ALQCSGHEKW*MFFKPF*RHFAQR 290
>gb|AJ778592.1|AJ778592 AJ778592 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600003C06F1, mRNA sequence
Length = 717
Score = 232 bits (500), Expect = 2e-059
Identities = 91/137 (66%), Positives = 111/137 (81%)
Frame = +1 / +3
Query: 1849 MKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPHDQNAIADA 2028
++GVFINPA +EPFGLTLIEAAAHGLPIVATKNGGPVDI L+NGLLVDPHDQ +IA A
Sbjct: 138 VQGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIAGA 317
Query: 2029 LLKLVADKNLWQECRRNGLRNIHLYSWPEHCRTYLTRVAGCRLRNPRWLKDTPADAGADE 2208
LLKLVA+K+LW +CR+NGL+NIHL+SWPEHC+TYL+R+A C+ R+P+W K +D
Sbjct: 318 LLKLVAEKHLWAKCRQNGLKNIHLFSWPEHCKTYLSRIASCKSRHPQWQKSDDGADSSDT 497
Query: 2209 EEFLEDSMDAQDLSLRL 2259
+ + D QDLSL L
Sbjct: 498 DSPGDSLRDIQDLSLNL 548
>gb|CX182697.1|CX182697 E08_45-55_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 647
Score = 215 bits (464), Expect(2) = 5e-057
Identities = 84/130 (64%), Positives = 104/130 (80%)
Frame = +1 / +1
Query: 1870 PALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPHDQNAIADALLKLVAD 2049
PA +EPFGLTLIEAAAHGLP+VATKNGGPVDI L+NGLLVDPHDQ +IADALLKLVA+
Sbjct: 10 PAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVAE 189
Query: 2050 KNLWQECRRNGLRNIHLYSWPEHCRTYLTRVAGCRLRNPRWLKDTPADAGADEEEFLEDS 2229
K+LW +CR+NGL+NIH +SWPEHC+ YL+++AGC+ R+P+W K +D + +
Sbjct: 190 KHLWAKCRQNGLKNIHHFSWPEHCKAYLSKIAGCKPRHPQWQKSDDGADTSDTDSPGDSL 369
Query: 2230 MDAQDLSLRL 2259
D QDLSL L
Sbjct: 370 RDIQDLSLNL 399
Score = 33.1 bits (66), Expect(2) = 5e-057
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +1 / +1
Query: 2425 STMNKYPLLRRRRRLFVIAVD 2487
S+ K+P LRRR+ +FV+AVD
Sbjct: 559 SSSGKFPSLRRRKTIFVVAVD 621
>gb|CK095962.1|CK095962 UA38BPF06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA38BPF06 3', mRNA sequence
Length = 764
Score = 174 bits (374), Expect(2) = 5e-053
Identities = 69/123 (56%), Positives = 90/123 (73%)
Frame = +1 / -1
Query: 2836 DGSGDAVEQDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVV 3015
D S + +E+D S NAHC+A+ +KD KVK VD CH+MYCRNSTRLQ++
Sbjct: 683 DESSNPIEEDKKSRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQII 504
Query: 3016 PLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEAL 3195
P LASR+QALRYL VRW ++V NM++I GE+GDTD EEM+SG HKT+I++ V KGSE L
Sbjct: 503 PHLASRAQALRYLFVRWRLNVANMFVILGENGDTDYEEMISGAHKTIILKDVVTKGSEDL 324
Query: 3196 VRS 3204
+R+
Sbjct: 323 LRA 315
Score = 56.5 bits (117), Expect(2) = 5e-053
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1 / -1
Query: 3220 RDDVVPSETPLAAYTTGELKADEIMRALKQVSKTSSGM* 3336
RDD+VP E+PL AY +G+ A EI LKQVSK S+GM*
Sbjct: 305 RDDIVPKESPLIAYLSGKATASEIADVLKQVSKASAGM* 189
>gb|BU873883.1|BU873883 Q061A02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 616
Score = 164 bits (353), Expect(2) = 4e-050
Identities = 65/111 (58%), Positives = 83/111 (74%)
Frame = +1 / +1
Query: 2872 SSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQALRY 3051
S NAHC+A+ +KD KVK VD CH+MYCRNSTRLQ++P LASR+QALRY
Sbjct: 25 SRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASRAQALRY 204
Query: 3052 LSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALVRS 3204
L VRW ++V NM++I GE+GDTD EEM+SG HKT+I++ V KGSE L+R+
Sbjct: 205 LFVRWRLNVANMFVILGENGDTDYEEMISGAHKTIILKDVVTKGSEDLLRA 357
Score = 56.5 bits (117), Expect(2) = 4e-050
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1 / +1
Query: 3220 RDDVVPSETPLAAYTTGELKADEIMRALKQVSKTSSGM* 3336
RDD+VP E+PL AY +G+ A EI LKQVSK S+GM*
Sbjct: 367 RDDIVPKESPLIAYLSGKATASEIADVLKQVSKASAGM* 483
>gb|CK090275.1|CK090275 C084P86.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C084P86 3', mRNA sequence
Length = 589
Score = 99.1 bits (210), Expect(3) = 9e-050
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +1 / +2
Query: 943 KEALWPYLQEFVDGALAHILNMSKALGEQVGNGRPVLPYVIHGHYADAGD 1092
KE+LWP++ EFVDGAL HI+NM++ALGEQV G+P PYVIHGHYADAG+
Sbjct: 440 KESLWPWIPEFVDGALNHIVNMARALGEQVNGGKPTWPYVIHGHYADAGE 589
Score = 81.7 bits (172), Expect(3) = 9e-050
Identities = 35/55 (63%), Positives = 42/55 (76%)
Frame = +1 / +1
Query: 718 QVKYVVELARAMSMMPGVYRVDLFTRQVSSLDVDWSYGEPTEMLCAGSNDGEGMG 882
QVKYVVELARA++ GVYRVDL TRQ++S +VD+SYGEP EML S+D G
Sbjct: 253 QVKYVVELARALANTKGVYRVDLLTRQITSPEVDFSYGEPIEMLSCPSDDSGSCG 417
Score = 57.4 bits (119), Expect(3) = 9e-050
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +1 / +1
Query: 613 SDDNKEKKLYIVLISVHGLVRGENMELGRDSDTGGQV 723
+ D+ Y S+HGLVRGENMELGRDSDTGGQV
Sbjct: 25 NQDSLSDNKYHFSCSMHGLVRGENMELGRDSDTGGQV 135
Score = 50.1 bits (103), Expect(4) = 1e-021
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = -1 / -3
Query: 848 NISVGSP*LQSTSRDDT*RVKRSTLYTPGIIDIALASSTTYFT 720
+IS+GSP*L+STS + V+RST TP ++ A ASSTTYFT
Sbjct: 383 SISIGSP*LKSTSGEVICLVRRSTR*TPFVLARARASSTTYFT 255
Score = 45.5 bits (93), Expect(4) = 1e-021
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -1 / -3
Query: 722 TWPPVSESRPSSMFSPRTRPC 660
T PPVSES PSSMFSPRT PC
Sbjct: 134 T*PPVSESLPSSMFSPRTNPC 72
Score = 41.8 bits (85), Expect(4) = 1e-021
Identities = 21/41 (51%), Positives = 24/41 (58%)
Frame = -1 / -2
Query: 1064 IT*GSTGLPFPTCSPRALDMFRICARAPSTNSWR*GHNASF 942
IT*G G P TCSP AL + + APSTNS G + SF
Sbjct: 561 IT*GQVGFPPLTCSPSALAILTMWFNAPSTNSGIQGQSDSF 439
Score = 22.6 bits (43), Expect(4) = 1e-021
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2 / -3
Query: 1087 QHRHSAHVSRKAVLAS 1040
QH+ SA S KA LAS
Sbjct: 584 QHQRSARESHKAKLAS 537
>gb|BU819039.1|BU819039 UA38BPF06 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 511
Score = 160 bits (344), Expect(3) = 2e-047
Identities = 63/112 (56%), Positives = 82/112 (73%)
Frame = +1 / +1
Query: 2836 DGSGDAVEQDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVV 3015
D S + +E+D S NAHC+A+ +KD KVK VD CH+MYCRNSTRLQ++
Sbjct: 172 DESSNPIEEDKKSRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQII 351
Query: 3016 PLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGV 3171
P LASR+QALRYL VRW ++V NM++I GE+GDTD EEM+SG HKT+I++ V
Sbjct: 352 PHLASRAQALRYLFVRWRLNVANMFVILGENGDTDHEEMISGAHKTIILKDV 507
Score = 46.0 bits (94), Expect(3) = 2e-047
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1 / +1
Query: 2704 YPGTANCMDAEGKLRPDQDYLMHISHRWSHDGARQTIAKLMGAQDGSGDAVE 2859
Y C +GKL D DY HI +R DG ++TI KLM +G + E
Sbjct: 22 YITPGTCTQVDGKLVRDPDYAAHIDYRGGCDGLKKTIWKLMNTNEGGKQSDE 177
Score = 24.0 bits (46), Expect(3) = 2e-047
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / +3
Query: 2686 SGSEVYYPG 2712
SG EVYYPG
Sbjct: 9 SGGEVYYPG 35
>gb|BI122326.1|BI122326 I005P20P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 486
Score = 174 bits (374), Expect(2) = 1e-046
Identities = 69/123 (56%), Positives = 90/123 (73%)
Frame = +1 / +3
Query: 2836 DGSGDAVEQDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVV 3015
D S + +E+D S NAHC+A+ +KD KVK VD CH+MYCRNSTRLQ++
Sbjct: 90 DESSNPIEEDKKSRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQII 269
Query: 3016 PLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEAL 3195
P LASR+QALRYL VRW ++V NM++I GE+GDTD EEM+SG HKT+I++ V KGSE L
Sbjct: 270 PHLASRAQALRYLFVRWRLNVANMFVILGENGDTDYEEMISGAHKTIILKDVVTKGSEDL 449
Query: 3196 VRS 3204
+R+
Sbjct: 450 LRA 458
Score = 35.0 bits (70), Expect(2) = 1e-046
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1 / +3
Query: 2770 HISHRWSHDGARQTIAKLMGAQDGSGDAVE 2859
HI +RW DG ++TI KLM +G + E
Sbjct: 6 HIDYRWGCDGLKKTIWKLMNTNEGGKQSDE 95
>gb|CV239289.1|CV239289 WS0231.B21_P03 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_P03
3', mRNA sequence
Length = 687
Score = 163 bits (351), Expect(2) = 2e-044
Identities = 64/100 (64%), Positives = 85/100 (85%)
Frame = +1 / -2
Query: 256 FNPSHYFVEEVVKGVDESDLHRTWIKVVATRNARERSTRLENMCWRIWHLARKKKQLELE 435
F+P+ YFVEEVV G DE+DL+R+W++ ATR+ +ER+TRLENMCWRIW+LAR+KKQLE +
Sbjct: 401 FSPTRYFVEEVVSGFDETDLYRSWVRAQATRSPQERNTRLENMCWRIWNLARQKKQLEGD 222
Query: 436 GIQRISARRKEQEQVRREATEDLAEDLSEGEKGDTIGELA 555
QR + RR E+E+ RREA D++EDLSEGEKGDT+G+L+
Sbjct: 221 LAQRNAKRRLERERGRREAVADMSEDLSEGEKGDTVGDLS 102
Score = 38.6 bits (78), Expect(2) = 2e-044
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1 / -2
Query: 112 MAGNEWINGYLEAILD 159
MAGN+WIN YLEAILD
Sbjct: 506 MAGNDWINSYLEAILD 459
>gb|CV244451.1|CV244451 WS0254.B21_L08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_L08 3', mRNA sequence
Length = 655
Score = 163 bits (351), Expect(2) = 2e-044
Identities = 64/100 (64%), Positives = 85/100 (85%)
Frame = +1 / -2
Query: 256 FNPSHYFVEEVVKGVDESDLHRTWIKVVATRNARERSTRLENMCWRIWHLARKKKQLELE 435
F+P+ YFVEEVV G DE+DL+R+W++ ATR+ +ER+TRLENMCWRIW+LAR+KKQLE +
Sbjct: 393 FSPTRYFVEEVVSGFDETDLYRSWVRAQATRSPQERNTRLENMCWRIWNLARQKKQLEGD 214
Query: 436 GIQRISARRKEQEQVRREATEDLAEDLSEGEKGDTIGELA 555
QR + RR E+E+ RREA D++EDLSEGEKGDT+G+L+
Sbjct: 213 LAQRNAKRRLERERGRREAVADMSEDLSEGEKGDTVGDLS 94
Score = 38.6 bits (78), Expect(2) = 2e-044
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1 / -2
Query: 112 MAGNEWINGYLEAILD 159
MAGN+WIN YLEAILD
Sbjct: 498 MAGNDWINSYLEAILD 451
>gb|CK100777.1|CK100777 C084P86.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C084P86 5', mRNA sequence
Length = 437
Score = 133 bits (285), Expect(3) = 1e-041
Identities = 54/75 (72%), Positives = 62/75 (82%)
Frame = +1 / -2
Query: 943 KEALWPYLQEFVDGALAHILNMSKALGEQVGNGRPVLPYVIHGHYADAGDVAALLSGALN 1122
KE+LWP++ EFVDGAL HI+NM++ALGEQV G+P PYVIHGHYADAG+VAALLSGALN
Sbjct: 319 KESLWPWIPEFVDGALNHIVNMARALGEQVNGGKPTWPYVIHGHYADAGEVAALLSGALN 140
Query: 1123 VPMVLTGHSLGRNKL 1167
VPMVL G G L
Sbjct: 139 VPMVLQGTLWGGTSL 95
Score = 40.9 bits (83), Expect(3) = 1e-041
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1 / -1
Query: 790 TRQVSSLDVDWSYGEPTEMLCAGSNDGEGMG 882
TRQ++S +VD+SYGEP E+L S+D G
Sbjct: 434 TRQITSPEVDFSYGEPIELLSCPSDDSGSCG 342
Score = 36.3 bits (73), Expect(3) = 1e-041
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +1 / -3
Query: 1198 KEEIDSTYKIMRRIEGEEL 1254
KE I++TYKIMRRIE EE+
Sbjct: 66 KEHINATYKIMRRIEAEEM 10
>gb|CV283626.1|CV283626 WS0187.B21_N13 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides
cDNA clone WS0187_N13 3', mRNA sequence
Length = 607
Score = 135 bits (290), Expect(2) = 2e-041
Identities = 52/78 (66%), Positives = 67/78 (85%)
Frame = +1 / -1
Query: 2971 CHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHK 3150
CH+MYCRNSTRLQ++P LASR+QALRYL VRW ++V NM++I GE+GDTD EEM+SG HK
Sbjct: 559 CHLMYCRNSTRLQIIPHLASRAQALRYLFVRWRLNVANMFVILGENGDTDYEEMISGAHK 380
Query: 3151 TVIVRGVTEKGSEALVRS 3204
T+I++ V KGSE L+R+
Sbjct: 379 TIILKDVVTKGSEDLLRT 326
Score = 56.5 bits (117), Expect(2) = 2e-041
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1 / -1
Query: 3220 RDDVVPSETPLAAYTTGELKADEIMRALKQVSKTSSGM* 3336
RDD+VP E+PL AY +G+ A EI LKQVSK S+GM*
Sbjct: 316 RDDIVPKESPLIAYLSGKATASEIADVLKQVSKASAGM* 200
>gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 673
Score = 130 bits (278), Expect(2) = 2e-032
Identities = 53/107 (49%), Positives = 68/107 (63%)
Frame = +1 / +1
Query: 2875 SNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQALRYL 3054
S+ +C AF +K P V V CH++YC+N TRL V+P+LASRSQALRYL
Sbjct: 277 SSDYCYAFTVKKPGLVPPVKDLQKVLRIQALRCHVIYCQNGTRLNVIPVLASRSQALRYL 456
Query: 3055 SVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEAL 3195
VRWGV + NM + GE GDTD E +L GLHK+V+++GV S L
Sbjct: 457 YVRWGVELANMVVFAGECGDTDYEGLLGGLHKSVVLKGVCSSASNQL 597
Score = 36.3 bits (73), Expect(2) = 2e-032
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1 / +1
Query: 2641 LGKIPATDFDALICGSGSEVYY 2706
LG +DFDA IC SGS++YY
Sbjct: 37 LGGFSPSDFDAFICNSGSDLYY 102
>gb|AJ773512.1|AJ773512 AJ773512 Populus euphratica shoot 3-6 months Populus euphratica cDNA
clone P0000300003B11F1, mRNA sequence
Length = 384
Score = 133 bits (284), Expect(2) = 6e-032
Identities = 55/102 (53%), Positives = 70/102 (68%)
Frame = +1 / +1
Query: 2836 DGSGDAVEQDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVV 3015
D S +E+D SS AHC+A+L+KD KVK VD CH+MY RNSTRL ++
Sbjct: 76 DESSSPIEEDKKSSTAHCIAYLVKDRSKVKRVDDLTQKLRMRRLRCHLMYRRNSTRLHII 255
Query: 3016 PLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSG 3141
PLLASR+QALR L VRW ++V +M++I GE+G TD EE LSG
Sbjct: 256 PLLASRAQALRSLFVRWRLNVAHMFVILGENGHTDYEETLSG 381
Score = 27.2 bits (53), Expect(2) = 6e-032
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1 / +1
Query: 2779 HRWSHDGARQTIAKLMGAQDG 2841
+RW DG +TI KLM +G
Sbjct: 1 YRWGCDGLTKTIWKLMNTTEG 63
>gb|CK105779.1|CK105779 UA38BPF06.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA38BPF06 5', mRNA sequence
Length = 438
Score = 106 bits (227), Expect(2) = 2e-031
Identities = 42/72 (58%), Positives = 51/72 (70%)
Frame = +1 / +1
Query: 2872 SSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQALRY 3051
S NAHC+A+ +KD KVK VD CH+MYCRNSTRLQ++P LASR+QALRY
Sbjct: 202 SRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASRAQALRY 381
Query: 3052 LSVRWGVSVGNM 3087
L VRW ++V NM
Sbjct: 382 LFVRWRLNVANM 417
Score = 51.5 bits (106), Expect(2) = 2e-031
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +1 / +2
Query: 2722 CMDAEGKLRPDQDYLMHISHRWSHDGARQTIAKLMGAQDGSGDAVE 2859
C +GKL D DY HI +RW DG ++TI KLM +G + E
Sbjct: 35 CTQVDGKLVRDPDYAAHIDYRWGCDGLKKTIWKLMNTNEGGKQSDE 172
>gb|DT488170.1|DT488170 WS02535.B21_L05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_L05 3', mRNA sequence
Length = 901
Score = 128 bits (274), Expect = 2e-028
Identities = 53/107 (49%), Positives = 66/107 (61%)
Frame = +1 / -2
Query: 2875 SNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQALRYL 3054
S +C AF +K P V V CH +YC+N TRL V+P+LASRSQALRYL
Sbjct: 831 STDYCYAFTVKKPGLVPPVKELQKALRIQALRCHAIYCQNGTRLNVIPVLASRSQALRYL 652
Query: 3055 SVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEAL 3195
VRWGV + NM + GE GDTD E +L GLHK+V+++GV S L
Sbjct: 651 YVRWGVELANMVVFAGECGDTDYEGLLGGLHKSVVLKGVCSSASNQL 511
>gb|DT492401.1|DT492401 WS02550.C21_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_J20 3', mRNA sequence
Length = 852
Score = 128 bits (274), Expect = 2e-028
Identities = 53/107 (49%), Positives = 66/107 (61%)
Frame = +1 / -1
Query: 2875 SNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQALRYL 3054
S +C AF +K P V V CH +YC+N TRL V+P+LASRSQALRYL
Sbjct: 831 STDYCYAFTVKKPGLVPPVKELQKALRIQALRCHAIYCQNGTRLNVIPVLASRSQALRYL 652
Query: 3055 SVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEAL 3195
VRWGV + NM + GE GDTD E +L GLHK+V+++GV S L
Sbjct: 651 YVRWGVELANMVVFAGECGDTDYEGLLGGLHKSVVLKGVCSSASNQL 511
>gb|BI072708.1|BI072708 C084P86U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 191
Score = 121 bits (258), Expect = 4e-026
Identities = 52/63 (82%), Positives = 54/63 (85%)
Frame = +1 / -2
Query: 1015 ALGEQVGNGRPVLPYVIHGHYADAGDVAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRM 1194
ALGEQV G+P PYVI G YADAG+VAALLSGALNVPMVLTGHSLGRNK E LLKQGR
Sbjct: 190 ALGEQVNGGKPXWPYVIRGXYADAGEVAALLSGALNVPMVLTGHSLGRNKFEXLLKQGRH 11
Query: 1195 SKE 1203
SKE
Sbjct: 10 SKE 2
>gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G103P72 5', mRNA sequence
Length = 597
Score = 105 bits (224), Expect(2) = 2e-024
Identities = 43/86 (50%), Positives = 53/86 (61%)
Frame = +1 / +1
Query: 2875 SNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQALRYL 3054
S +C AF +K P V V CH++YC+N TRL V+P+LASRSQALRYL
Sbjct: 232 STDYCYAFTVKKPGLVPPVKELQKVLRIQALRCHVIYCQNGTRLNVIPVLASRSQALRYL 411
Query: 3055 SVRWGVSVGNMYLITGEHGDTDLEEM 3132
VRWGV + NM + GE GDTD E +
Sbjct: 412 YVRWGVELANMVVFAGECGDTDYERI 489
Score = 33.6 bits (67), Expect(2) = 2e-024
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1 / +1
Query: 2659 TDFDALICGSGSEVYY 2706
+DFDA IC SGS++YY
Sbjct: 10 SDFDAFICNSGSDLYY 57
>gb|DT477637.1|DT477637 WS02520.BR_I13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I13 5', mRNA sequence
Length = 751
Score = 112 bits (240), Expect = 1e-023
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = +1 / +1
Query: 2971 CHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHK 3150
CH +YC+N TR+ V+P+LASRSQALRYL VRWGV + +M + GE GDTD E +L GLHK
Sbjct: 4 CHAIYCQNGTRINVIPVLASRSQALRYLYVRWGVELASMVVFVGECGDTDYEGLLGGLHK 183
Query: 3151 TVIVRGVTEKGSEAL 3195
+VI++GV S +
Sbjct: 184 SVILKGVCSSASSQI 228
>gb|DT482695.1|DT482695 WS02520.B21_I13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I13 3', mRNA sequence
Length = 751
Score = 112 bits (240), Expect = 1e-023
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = +1 / -1
Query: 2971 CHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHK 3150
CH +YC+N TR+ V+P+LASRSQALRYL VRWGV + +M + GE GDTD E +L GLHK
Sbjct: 748 CHAIYCQNGTRINVIPVLASRSQALRYLYVRWGVELASMVVFVGECGDTDYEGLLGGLHK 569
Query: 3151 TVIVRGVTEKGSEAL 3195
+VI++GV S +
Sbjct: 568 SVILKGVCSSASSQI 524
>gb|CV259899.1|CV259899 WS02012.B21_J06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_J06 3', mRNA sequence
Length = 770
Score = 108 bits (230), Expect = 3e-022
Identities = 41/90 (45%), Positives = 58/90 (64%)
Frame = +1 / -2
Query: 2902 IKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVG 3081
+KD + V CH++YC+ ++ V+P+LASRSQALRYL VRWG +
Sbjct: 769 VKDLSLIPPVKELRKLMRIQALRCHVIYCQQGAKINVIPVLASRSQALRYLYVRWGTDLS 590
Query: 3082 NMYLITGEHGDTDLEEMLSGLHKTVIVRGV 3171
N+ + TGE GDTD E +L GLHK+V+++GV
Sbjct: 589 NIVIFTGECGDTDYEGLLGGLHKSVVLKGV 500
>gb|DT483569.1|DT483569 WS02522.B21_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_P13 3', mRNA sequence
Length = 813
Score = 103 bits (219), Expect(2) = 6e-022
Identities = 46/107 (42%), Positives = 60/107 (56%)
Frame = +1 / +1
Query: 2875 SNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQALRYL 3054
S +C AF +K P V V CH +Y RN T + V+P+LASRSQALRYL
Sbjct: 223 STDYCYAFTVKKPVSVPPVKELQKVLTIQALRCHAIY*RNGTTINVIPVLASRSQALRYL 402
Query: 3055 SVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEAL 3195
V W V + +M + G GDT E +L GLHK+VI++GV S +
Sbjct: 403 YVPWAVELASMVVFVG*CGDTYYEGLLVGLHKSVILKGVCSTASSQI 543
Score = 28.1 bits (55), Expect(2) = 6e-022
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1 / +1
Query: 2662 DFDALICGSGSEVYY 2706
DFDA IC G ++YY
Sbjct: 1 DFDAFICNLGRDLYY 45
>gb|AY341026.1| Populus tremuloides sucrose synthase mRNA, complete cds
Length = 2792
Score = 71.2 bits (149), Expect(5) = 3e-021
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = +1 / +3
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPH 2004
E+YR KG F+ PAL E FGLT++EA GLP AT NGGP +I +G +DP+
Sbjct: 2085 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPY 2264
Query: 2005 DQNAIADALL 2034
A+ L+
Sbjct: 2265 HGVQAAELLV 2294
Score = 43.2 bits (88), Expect(5) = 3e-021
Identities = 18/47 (38%), Positives = 32/47 (68%)
Frame = +1 / +3
Query: 1558 LTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNR 1698
L + +KP++ ++R D KN+T LV+ +G+ LRE+ NL ++ G+R
Sbjct: 1818 LKDRNKPILFTMARLDRVKNLTGLVEWYGKNTKLREVLNLDVVGGDR 1958
Score = 29.9 bits (59), Expect(5) = 3e-021
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1 / +3
Query: 1054 PYVIHGHYADAGDVAALLSGALNVPMVLTGHSLGRNK 1164
P +I G+Y+D VA+LL+ L V H+L + K
Sbjct: 1341 PDLIIGNYSDGNVVASLLAHKLGVTECTIAHALEKTK 1451
Score = 26.7 bits (52), Expect(5) = 3e-021
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1 / +3
Query: 706 DTGGQVKYVVELARAM 753
DTGGQV Y+++ RA+
Sbjct: 1017 DTGGQVVYILDQVRAL 1064
Score = 24.9 bits (48), Expect(5) = 3e-021
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1 / +3
Query: 1201 EEIDSTYKIMRRIEGEELALDASELVITSTRQEI 1302
++ D Y + + A++ ++ +ITST QEI
Sbjct: 1476 KKFDEKYHFSCQFTADLFAMNHTDFIITSTFQEI 1577
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,699,751,285
Number of Sequences: 369679
Number of extensions: 26335298
Number of successful extensions: 135900
Number of sequences better than 1.0e-020: 29
length of database: 67,802,888
effective HSP length: 56
effective length of database: 47,100,864
effective search space used: 52705866816
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)