TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696657.2.1
(1531 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Popu... 152 3e-051
gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Popul... 136 3e-049
gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA librar... 130 1e-047
gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA li... 126 4e-045
gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Librar... 130 2e-041
gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Libra... 133 1e-040
gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Po... 129 4e-037
gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA li... 93 3e-036
gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Popul... 127 7e-036
gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal libra... 91 8e-035
gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus ... 119 2e-034
gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Po... 129 1e-033
gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Librar... 134 2e-033
gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Librar... 129 6e-032
gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus ... 76 7e-032
gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Po... 122 8e-032
gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Popu... 112 1e-031
gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, compl... 59 1e-030
gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Libra... 131 1e-029
gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Po... 129 5e-029
gb|DT516784.1|DT516784 WS02432.B21_G08 PTxD-ICC-N-A-14 Popu... 87 5e-024
gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus... 56 5e-022
gb|DT521184.1|DT521184 WS02033.B21_J21 PTxN-IB-N-A-11 Popul... 78 5e-022
>gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 3', mRNA sequence
Length = 891
Score = 152 bits (326), Expect(3) = 3e-051
Identities = 59/124 (47%), Positives = 85/124 (68%)
Frame = -2 / -1
Query: 990 NATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIG 811
N + G+ LNS+ FHI I+ +++ V+ V V+A D NTDG+HV S+ ++ILNS IG
Sbjct: 810 NIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIHVQSSTGVTILNSRIG 631
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVR 631
TGDDCVSIGPG + + ++++ CGPG GIS+G LG+ E V ++TV+ T NGVR
Sbjct: 630 TGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNVTVKTTTFTGTENGVR 451
Query: 630 IKSY 619
IK++
Sbjct: 450 IKTW 439
Score = 54.7 bits (113), Expect(3) = 3e-051
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = -2 / -1
Query: 483 SHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNVEY 349
S V + DVT+++I G+S+T A+ CS+T PCSG+ L DV + Y
Sbjct: 312 SGVKISDVTYQDIHGSSATELAVKFDCSKTNPCSGIKLEDVKLTY 178
Score = 35.0 bits (70), Expect(3) = 3e-051
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2 / -1
Query: 594 ASHLTFENIRMEEVANPIVIDQYFCP 517
A ++ F++ M V NPIVIDQ +CP
Sbjct: 417 ARNILFQHAVMTNVQNPIVIDQNYCP 340
>gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 5', mRNA sequence
Length = 886
Score = 136 bits (291), Expect(3) = 3e-049
Identities = 52/108 (48%), Positives = 76/108 (70%)
Frame = -2 / +3
Query: 990 NATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIG 811
N + G+ LNS+ FHI I+ +++ V+ V V+A D NTDG+HV S+ ++ILNS IG
Sbjct: 543 NIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIHVQSSTGVTILNSRIG 722
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVR 667
TGDDCVSIGPG + + ++++ CGPG GIS+G LG+ E V ++TV+
Sbjct: 723 TGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNVTVK 866
Score = 75.3 bits (158), Expect(3) = 3e-049
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -2 / +3
Query: 1368 FDISKLGATSDGKTDCTKAVQDAWTSACEATGSATVVIPKGDYLVGPLNFTGPCKGSNIA 1189
+ + GA DGKTD TKA AW+ AC +T ATV +PKG + +G + F GPCK + I
Sbjct: 159 YSVLSYGAMPDGKTDSTKAFAAAWSQACASTQPATVSVPKGSFALGQVRFQGPCKNNAIL 338
Query: 1188 IQ 1183
++
Sbjct: 339 VR 344
Score = 23.5 bits (45), Expect(3) = 3e-049
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / +3
Query: 1086 GTLDGQGTAVYS 1051
GTLDGQG ++S
Sbjct: 444 GTLDGQGAGLWS 479
>gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 728
Score = 130 bits (279), Expect(3) = 1e-047
Identities = 51/118 (43%), Positives = 75/118 (63%)
Frame = -2 / +3
Query: 972 IKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCV 793
+K+ N++ H++ S + V ++ VT+P + NTDG+H+ + I I +S IGTGDDC+
Sbjct: 3 LKIQNAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCI 182
Query: 792 SIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
SI G + V ITCGPG GIS+G LG + + VS++TV L T NGVRIK++
Sbjct: 183 SIVSGSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAKLSGTANGVRIKTW 356
Score = 56.1 bits (116), Expect(3) = 1e-047
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -2 / +3
Query: 495 RSNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNVEYAG 343
R S + VK+V ++NI GTS++ A+ CS+ PC G+ L D+N+E AG
Sbjct: 468 RQQKSALQVKNVVYKNIKGTSASEVAMRFDCSKAYPCQGILLQDINLERAG 620
Score = 42.8 bits (87), Expect(3) = 1e-047
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2 / +3
Query: 591 SHLTFENIRMEEVANPIVIDQYFCPQ 514
S++ F+NI M +VANPI+IDQ +C Q
Sbjct: 378 SNIKFQNIEMNKVANPIIIDQNYCDQ 455
>gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 5', mRNA sequence
Length = 820
Score = 126 bits (269), Expect(3) = 4e-045
Identities = 50/118 (42%), Positives = 74/118 (62%)
Frame = -2 / +2
Query: 972 IKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCV 793
+K+ N++ H++ S + V ++ VT+P + NTDG+H+ + I I +S IGTGDDC+
Sbjct: 5 LKIQNAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCI 184
Query: 792 SIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
SI G + V ITCGPG GIS+G L + + VS++TV L T NGVRIK++
Sbjct: 185 SIVSGSHNVQAKGITCGPGHGISIGSL*VHDSKDHVSEVTVNGAKLSGTANGVRIKTW 358
Score = 52.4 bits (108), Expect(3) = 4e-045
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = -2 / +2
Query: 495 RSNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNVEYAG 343
R S + VK+V ++NI GTS++ A+ CS+ PC + L D+N+E AG
Sbjct: 470 RQQKSALQVKNVVYKNIKGTSASEVAMRFDCSKAYPCQRILLQDINLERAG 622
Score = 42.8 bits (87), Expect(3) = 4e-045
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2 / +2
Query: 591 SHLTFENIRMEEVANPIVIDQYFCPQ 514
S++ F+NI M +VANPI+IDQ +C Q
Sbjct: 380 SNIKFQNIEMNKVANPIIIDQNYCDQ 457
>gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 695
Score = 130 bits (278), Expect(2) = 2e-041
Identities = 54/125 (43%), Positives = 78/125 (62%)
Frame = -2 / +1
Query: 1050 KSKTDNVKAMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVEN 871
KSK N A TL + N + G+ LNS+ FHI I+ +++ V+ V V A D N
Sbjct: 319 KSKGSNCPAGATTLSFVNSNNIKIDGLLSLNSQMFHIVINGRQNVRVQGVRVIAAGDSPN 498
Query: 870 TDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEK 691
TDG+HV S+ ++I+NS+I TGDDC+SIGPG + ++ + CGPG GIS+G L + DE
Sbjct: 499 TDGIHVQLSTDVAIMNSSIKTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEP 678
Query: 690 DVSDI 676
V ++
Sbjct: 679 GVQNV 693
Score = 63.8 bits (133), Expect(2) = 2e-041
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = -2 / +1
Query: 1350 GATSDGKTDCTKAVQDAWTSACEATGSATVVIPKGDYLVGPLNFTG 1213
GA +GKTD T+A DAWT+AC +T + IPKG YL+G + FTG
Sbjct: 10 GARPNGKTDSTQAFLDAWTAACGSTDPTMIYIPKGRYLLGSVAFTG 147
>gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 689
Score = 133 bits (285), Expect(2) = 1e-040
Identities = 55/128 (42%), Positives = 80/128 (62%)
Frame = -2 / -2
Query: 1050 KSKTDNVKAMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVEN 871
KSK N A TL + N + G+ LNS+ FHI I+ +++ V+ V V A D N
Sbjct: 385 KSKGSNCPAGATTLSFVNSNNIKIDGLLSLNSQMFHIAINGCQNVRVQGVRVIAAGDSPN 206
Query: 870 TDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEK 691
TDG+HV S+ ++I+NS+ TGDDC+SIGPG + ++ + CGPG GIS+G L + DE
Sbjct: 205 TDGIHVQLSTDVAIMNSSTKTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEP 26
Query: 690 DVSDITVR 667
V ++TV+
Sbjct: 25 GVQNVTVK 2
Score = 57.9 bits (120), Expect(2) = 1e-040
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = -2 / -2
Query: 1338 DGKTDCTKAVQDAWTSACEATGSATVVIPKGDYLVGPLNFTG 1213
+GK D T+A DAWT+AC +T + IPKG YL+G + FTG
Sbjct: 682 NGKXDSTQAFLDAWTAACGSTDPTMIXIPKGRYLLGSVAFTG 557
>gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01017H09 5', mRNA sequence
Length = 705
Score = 129 bits (276), Expect(3) = 4e-037
Identities = 53/134 (39%), Positives = 77/134 (57%)
Frame = -2 / +3
Query: 1020 PNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSS 841
P L + V GI + NS H+ D ++ V D +P + NTDG+H+ S
Sbjct: 45 PTALRFYGSTRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSH 224
Query: 840 KISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNC 661
+ I +S + GDDCVSI GC+ V + ++ CGPG GIS+G LGR + VS++TVR+
Sbjct: 225 DVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDV 404
Query: 660 VLKNTTNGVRIKSY 619
+ NT GVRIK++
Sbjct: 405 AMLNTLTGVRIKTW 446
Score = 40.0 bits (81), Expect(3) = 4e-037
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2 / +3
Query: 585 LTFENIRMEEVANPIVIDQYFCPQKVCPGKRS 490
+TF NI++ V PI+IDQ++C + C K S
Sbjct: 474 VTFSNIQVSGVKTPIMIDQFYCDRSKCQNKSS 569
Score = 24.9 bits (48), Expect(3) = 4e-037
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2 / +3
Query: 417 ISLLCSETQPCSGVS 373
+ L CS+ PC+G+S
Sbjct: 630 VHLACSDNLPCTGIS 674
>gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 3', mRNA sequence
Length = 768
Score = 92.7 bits (196), Expect(3) = 3e-036
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = -2 / -2
Query: 837 ISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCV 658
I I +S IGTGDDC+SI G + V ITCGPG GIS+G LG + + VS++TV
Sbjct: 767 IQITDSVIGTGDDCISIVSGSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAK 588
Query: 657 LKNTTNGVRIKSY 619
L T NGVRIK++
Sbjct: 587 LSGTANGVRIKTW 549
Score = 56.1 bits (116), Expect(3) = 3e-036
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -2 / -2
Query: 495 RSNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNVEYAG 343
R S + VK+V ++NI GTS++ A+ CS+ PC G+ L D+N+E AG
Sbjct: 437 RQQKSALQVKNVVYKNIKGTSASEVAMRFDCSKAYPCQGILLQDINLERAG 285
Score = 42.8 bits (87), Expect(3) = 3e-036
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2 / -2
Query: 591 SHLTFENIRMEEVANPIVIDQYFCPQ 514
S++ F+NI M +VANPI+IDQ +C Q
Sbjct: 527 SNIKFQNIEMNKVANPIIIDQNYCDQ 450
>gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 5', mRNA sequence
Length = 802
Score = 127 bits (272), Expect(3) = 7e-036
Identities = 51/121 (42%), Positives = 75/121 (61%)
Frame = -2 / +3
Query: 981 VAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGD 802
V GI + NS H+ D+ ++ V D +P + NTDG+H+ S + I +S + GD
Sbjct: 27 VTGITIQNSPQTHLKFDDCTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLACGD 206
Query: 801 DCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKS 622
DCVSI GC+ V + ++ CGPG GIS+G LGR + VS++TVR+ + NT GVRIK+
Sbjct: 207 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKT 386
Query: 621 Y 619
+
Sbjct: 387 W 389
Score = 38.2 bits (77), Expect(3) = 7e-036
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2 / +3
Query: 585 LTFENIRMEEVANPIVIDQYFCPQKVCPGKRS 490
+TF NI++ V PI+IDQ++C + C + S
Sbjct: 417 VTFSNIQVSGVKTPIMIDQFYCDRSKCQNESS 512
Score = 24.4 bits (47), Expect(3) = 7e-036
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2 / +3
Query: 417 ISLLCSETQPCSGVS 373
+ L CS+ PC+G+S
Sbjct: 573 VHLACSDDLPCTGIS 617
>gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 736
Score = 91.3 bits (193), Expect(3) = 8e-035
Identities = 38/76 (50%), Positives = 48/76 (63%)
Frame = -2 / +2
Query: 846 SSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVR 667
+ I I +S IGTGDDC+SI G + V ITCGPG GIS+G LG + + VS +TV
Sbjct: 14 TQNIQITDSVIGTGDDCISIVSGSHHVQATGITCGPGHGISIGSLGAHDSKDHVSGVTVS 193
Query: 666 NCVLKNTTNGVRIKSY 619
L T NGVRIK++
Sbjct: 194 GAKLSGTANGVRIKTW 241
Score = 54.2 bits (112), Expect(3) = 8e-035
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = -2 / +2
Query: 495 RSNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNVEYAG 343
+ S + VK+V ++NI GTS++ A+ CS+ PC G+ L D+N+E AG
Sbjct: 353 KQQKSALQVKNVMYKNIKGTSASEVAMRFDCSKAYPCQGILLQDINLERAG 505
Score = 40.9 bits (83), Expect(3) = 8e-035
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -2 / +2
Query: 591 SHLTFENIRMEEVANPIVIDQYFCPQ 514
S++ F+NI M +V NPI+IDQ +C Q
Sbjct: 263 SNIKFQNIEMNKVTNPIIIDQNYCDQ 340
>gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_H13 3', mRNA sequence
Length = 937
Score = 119 bits (254), Expect(2) = 2e-034
Identities = 43/98 (43%), Positives = 69/98 (70%)
Frame = -2 / -2
Query: 912 VKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQ 733
+K +++++P NTDG+H+ + + I +S I GDDC+SIG GC+ V +D +TCGP
Sbjct: 933 IKKLSISSPKLSPNTDGIHIENTKAVGIYDSFISNGDDCISIGTGCSNVDIDGLTCGPSH 754
Query: 732 GISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
GIS+G LG + + VS+ITVRN ++K + +G+RIK++
Sbjct: 753 GISIGSLGVHNSQACVSNITVRNTIIKESDDGLRIKTW 640
Score = 47.8 bits (98), Expect(2) = 2e-034
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -2 / -2
Query: 591 SHLTFENIRMEEVANPIVIDQYFCPQKVCPGKRS 490
S + FENI+ME V N I+IDQY+C K C + S
Sbjct: 618 SDINFENIQMENVRNCIIIDQYYCLSKACQNETS 517
>gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01032F08 5', mRNA sequence
Length = 696
Score = 129 bits (276), Expect(2) = 1e-033
Identities = 53/134 (39%), Positives = 77/134 (57%)
Frame = -2 / +3
Query: 1020 PNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSS 841
P L + V GI + NS H+ D ++ V D +P + NTDG+H+ S
Sbjct: 243 PTALRFYGSTRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSH 422
Query: 840 KISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNC 661
+ I +S + GDDCVSI GC+ V + ++ CGPG GIS+G LGR + VS++TVR+
Sbjct: 423 DVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDV 602
Query: 660 VLKNTTNGVRIKSY 619
+ NT GVRIK++
Sbjct: 603 AMLNTLTGVRIKTW 644
Score = 35.4 bits (71), Expect(2) = 1e-033
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2 / +3
Query: 1131 WIELSHVNNIGITGSGTLDGQGTAVYSKSKT 1039
WIE + +N I I G G +DGQG+ ++ T
Sbjct: 96 WIEFTKLNGITIQGKGIIDGQGSVWWNNLPT 188
>gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 644
Score = 134 bits (288), Expect(2) = 2e-033
Identities = 56/144 (38%), Positives = 88/144 (61%)
Frame = -2 / -1
Query: 1050 KSKTDNVKAMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVEN 871
K+K++ + P L + + G+ + NS+ H I +S+S+ V DV V+AP D N
Sbjct: 458 KNKSNPCRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPN 279
Query: 870 TDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEK 691
TDG+H+ GS+ + + + IGTGDDCVSI G + + + I CGPG+GIS+G LG+
Sbjct: 278 TDGIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTG 99
Query: 690 DVSDITVRNCVLKNTTNGVRIKSY 619
V+ + + L+ TTNG+RIK++
Sbjct: 98 MVTKVVLDTAFLRETTNGLRIKTW 27
Score = 29.0 bits (57), Expect(2) = 2e-033
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2 / -1
Query: 1131 WIELSHVNNIGITGSGTLDGQGTAVYSKSKTDN 1033
W+ S +N + G+G +DG G+ ++ S N
Sbjct: 551 WLYFSKLNGVLFQGNGVIDGSGSKWWASSCKKN 453
>gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 579
Score = 129 bits (277), Expect(2) = 6e-032
Identities = 55/144 (38%), Positives = 87/144 (60%)
Frame = -2 / -2
Query: 1050 KSKTDNVKAMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVEN 871
K+K++ + P L + + G+ + NS+ H I +S+S+ V DV V+AP D N
Sbjct: 458 KNKSNPCRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPN 279
Query: 870 TDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEK 691
TDG+H+ GS+ + + + IGTGDDCVSI G + + + I GPG+GIS+G LG+
Sbjct: 278 TDGIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFYGPGRGISIGSLGKDNSTG 99
Query: 690 DVSDITVRNCVLKNTTNGVRIKSY 619
V+ + + L+ TTNG+RIK++
Sbjct: 98 MVTKVVLDTAFLRETTNGLRIKTW 27
Score = 29.0 bits (57), Expect(2) = 6e-032
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2 / -2
Query: 1131 WIELSHVNNIGITGSGTLDGQGTAVYSKSKTDN 1033
W+ S +N + G+G +DG G+ ++ S N
Sbjct: 551 WLYFSKLNGVLFQGNGVIDGSGSKWWASSCKKN 453
>gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_M05 3', mRNA sequence
Length = 928
Score = 75.8 bits (159), Expect(3) = 7e-032
Identities = 30/64 (46%), Positives = 40/64 (62%)
Frame = -2 / -3
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVR 631
TGDDC+SI + + + +I CGPG GIS+G LG+ V D+ V L NT NGVR
Sbjct: 926 TGDDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNTDNGVR 747
Query: 630 IKSY 619
IK++
Sbjct: 746 IKTW 735
Score = 52.8 bits (109), Expect(3) = 7e-032
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = -2 / -3
Query: 492 SNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
+ +S V V++++FR I GTS+T EAI CS+ PC G+ L DV +
Sbjct: 620 NQTSAVKVENISFRRIKGTSATEEAIKFACSDDLPCKGLYLEDVQL 483
Score = 47.8 bits (98), Expect(3) = 7e-032
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = -2 / -3
Query: 594 ASHLTFENIRMEEVANPIVIDQYFCPQKV 508
A+++TF+NI ME V+NPI+IDQY+C V
Sbjct: 716 ATNITFQNIFMENVSNPIIIDQYYCDAHV 630
>gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01032C08 5', mRNA sequence
Length = 698
Score = 122 bits (262), Expect(2) = 8e-032
Identities = 53/145 (36%), Positives = 77/145 (53%)
Frame = -2 / +3
Query: 1020 PNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSS 841
P L + V GI + NS H+ D ++ V D +P + NTDG+H+ S
Sbjct: 243 PTALRFYGSTRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSH 422
Query: 840 KISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNC 661
+ I +S + GDDCVSI GC+ V + ++ CGPG GIS+G LGR + VS++TVR+
Sbjct: 423 DVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDV 602
Query: 660 VLKNTTNGVRIKSYVDAESVLTASH 586
+ NT N + K + T SH
Sbjct: 603 AMLNTXNWCQNKDMAGRLWLSTRSH 677
Score = 35.4 bits (71), Expect(2) = 8e-032
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2 / +3
Query: 1131 WIELSHVNNIGITGSGTLDGQGTAVYSKSKT 1039
WIE + +N I I G G +DGQG+ ++ T
Sbjct: 96 WIEFTKLNGITIQGKGIIDGQGSVWWNNLPT 188
>gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 3', mRNA sequence
Length = 934
Score = 112 bits (240), Expect(3) = 1e-031
Identities = 44/101 (43%), Positives = 65/101 (64%)
Frame = -2 / -2
Query: 921 SITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCG 742
++ V D +P + NTDG+H+ S + I +S + GDDCVSI GC+ V + ++ CG
Sbjct: 924 TVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCG 745
Query: 741 PGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
PG GIS+G LGR + VS++TVR+ + NT GVRIK++
Sbjct: 744 PGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKTW 622
Score = 38.2 bits (77), Expect(3) = 1e-031
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2 / -2
Query: 585 LTFENIRMEEVANPIVIDQYFCPQKVCPGKRS 490
+TF NI++ V PI+IDQ++C + C + S
Sbjct: 594 VTFSNIQVSGVKTPIMIDQFYCDRSKCQNESS 499
Score = 24.4 bits (47), Expect(3) = 1e-031
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2 / -2
Query: 417 ISLLCSETQPCSGVS 373
+ L CS+ PC+G+S
Sbjct: 438 VHLACSDDLPCTGIS 394
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
Length = 143392
Score = 58.8 bits (122), Expect(7) = 1e-030
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = -2 / +2
Query: 981 VAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTG 805
V G+ + NS+ H I S S+ + V+V+AP D NTDG+H+ S+ + + + IGTG
Sbjct: 98702 VKGLTIKNSQQMHFVISKSASVRISQVSVSAPGDSPNTDGIHITQSTNVVLQDCKIGTG 98878
Score = 51.0 bits (105), Expect(7) = 1e-030
Identities = 17/45 (37%), Positives = 33/45 (73%)
Frame = -2 / +2
Query: 486 SSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNVE 352
+S V + ++ +RNI+GT+ + +A++ CS++ PCS + L +VN+E
Sbjct: 99758 TSAVKISEIMYRNISGTTKSEKAMTFACSDSVPCSNIVLSNVNLE 99892
Score = 42.3 bits (86), Expect(7) = 1e-030
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2 / +2
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCL 712
+GDDC+SI G +G+ + I CGPG G+ + +
Sbjct: 99011 SGDDCISIVNGSSGIKMKRIYCGPGHGVRLSSI 99109
Score = 41.4 bits (84), Expect(7) = 1e-030
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -2 / +1
Query: 579 FENIRMEEVANPIVIDQYFC 520
FEN+RM+ V NPI+IDQ++C
Sbjct: 99544 FENVRMDNVDNPIIIDQFYC 99603
Score = 33.6 bits (67), Expect(7) = 1e-030
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2 / +3
Query: 729 ISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
+S+G LG+ V+ + + + TTNGVRIK++
Sbjct: 99264 LSIGSLGKDNSTGIVAKVVLDTAFISETTNGVRIKTW 99374
Score = 33.6 bits (67), Expect(7) = 1e-030
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2 / +3
Query: 1317 KAVQDAWTSACEATGSATVVIPKGDYLVGPLNFTGPCK 1204
+A AW +AC S +V + YLV F GPC+
Sbjct: 98016 QAFVKAWETACATPESVFLVPSEHHYLVNATRFKGPCE 98129
Score = 32.7 bits (65), Expect(7) = 1e-030
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2 / +2
Query: 1143 YTASWIELSHVNNIGITGSGTLDGQGTAVYSKSKTDN 1033
+ W+E S +N + G+G +DG G+ ++ S N
Sbjct: 98351 HARQWLEFSKLNGVLFQGNGVIDGSGSKWWASSCKKN 98461
>gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 527
Score = 131 bits (281), Expect = 1e-029
Identities = 55/144 (38%), Positives = 87/144 (60%)
Frame = -2 / -1
Query: 1050 KSKTDNVKAMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVEN 871
K+K++ + P L + + G+ + NS+ H I +S+S+ V V V+AP D N
Sbjct: 458 KNKSNPCRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSHVLVSAPEDSPN 279
Query: 870 TDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEK 691
TDG+H+ GS+ + + + IGTGDDCVSI G + + + I CGPG+GIS+G LG+
Sbjct: 278 TDGIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTG 99
Query: 690 DVSDITVRNCVLKNTTNGVRIKSY 619
V+ + + L+ TTNG+RIK++
Sbjct: 98 MVTKVVLDTAFLRETTNGLRIKTW 27
>gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01023H02 5', mRNA sequence
Length = 611
Score = 129 bits (276), Expect = 5e-029
Identities = 53/134 (39%), Positives = 77/134 (57%)
Frame = -2 / +2
Query: 1020 PNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSS 841
P L + V GI + NS H+ D ++ V D +P + NTDG+H+ S
Sbjct: 131 PTALRFYGSTRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSH 310
Query: 840 KISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNC 661
+ I +S + GDDCVSI GC+ V + ++ CGPG GIS+G LGR + VS++TVR+
Sbjct: 311 DVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDV 490
Query: 660 VLKNTTNGVRIKSY 619
+ NT GVRIK++
Sbjct: 491 AMLNTLTGVRIKTW 532
>gb|DT516784.1|DT516784 WS02432.B21_G08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02432_G08 3', mRNA sequence
Length = 826
Score = 87.2 bits (184), Expect(3) = 5e-024
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = -2 / -2
Query: 825 NSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNT 646
+S + GDDCVSI GC+ V + ++ CGPG GIS+G LGR + VS++TVR+ + NT
Sbjct: 825 SSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNT 646
Query: 645 TNGVRIKSY 619
GVRIK++
Sbjct: 645 LTGVRIKTW 619
Score = 38.2 bits (77), Expect(3) = 5e-024
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2 / -2
Query: 585 LTFENIRMEEVANPIVIDQYFCPQKVCPGKRS 490
+TF NI++ V PI+IDQ++C + C + S
Sbjct: 591 VTFSNIQVSGVKTPIMIDQFYCDRSKCQNESS 496
Score = 24.4 bits (47), Expect(3) = 5e-024
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2 / -2
Query: 417 ISLLCSETQPCSGVS 373
+ L CS+ PC+G+S
Sbjct: 435 VHLACSDDLPCTGIS 391
>gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_J07 3', mRNA sequence
Length = 722
Score = 56.1 bits (116), Expect(3) = 5e-022
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = -2 / -2
Query: 747 CGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
CGPG GIS+G LG+ E V ++TV+ T NGVRIK++
Sbjct: 721 CGPGHGISIGSLGKDSQEAGVQNVTVKTTTFTGTENGVRIKTW 593
Score = 51.9 bits (107), Expect(3) = 5e-022
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = -2 / -2
Query: 483 SHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
S V + DVT+++I G+S+T A+ CS+T PCSG+ L DV +
Sbjct: 466 SGVKISDVTYQDIHGSSATELAVKFDCSKTNPCSGIKLEDVKL 338
Score = 35.0 bits (70), Expect(3) = 5e-022
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2 / -2
Query: 594 ASHLTFENIRMEEVANPIVIDQYFCP 517
A ++ F++ M V NPIVIDQ +CP
Sbjct: 571 ARNILFQHAVMTNVQNPIVIDQNYCP 494
>gb|DT521184.1|DT521184 WS02033.B21_J21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_J21 3', mRNA sequence
Length = 847
Score = 77.6 bits (163), Expect(2) = 5e-022
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = -2 / -3
Query: 792 SIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
SIG GC+ V +D +TCGP GIS+G LG + + VS+ITVRN ++K + +G+RIK++
Sbjct: 845 SIGTGCSNVDIDGLTCGPSHGISIGSLGVHNSQACVSNITVRNTIIKESDDGLRIKTW 672
Score = 47.8 bits (98), Expect(2) = 5e-022
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -2 / -3
Query: 591 SHLTFENIRMEEVANPIVIDQYFCPQKVCPGKRS 490
S + FENI+ME V N I+IDQY+C K C + S
Sbjct: 650 SDINFENIQMENVRNCIIIDQYYCLSKACQNETS 549
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 613,132,967
Number of Sequences: 369679
Number of extensions: 7924215
Number of successful extensions: 45490
Number of sequences better than 1.0e-020: 25
length of database: 67,802,888
effective HSP length: 54
effective length of database: 47,840,222
effective search space used: 21767301010
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)