TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3642920.2.1
(570 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU837261.1|BU837261 T096G03 Populus apical shoot cDNA li... 145 2e-052
gb|DT491778.1|DT491778 WS02548.C21_M04 PT-MB-N-A-15 Populus... 123 2e-047
gb|AY278315.1| Populus alba ecotype 2AS11 glycosyl transfer... 100 2e-042
gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferas... 100 5e-042
gb|AJ778757.1|AJ778757 AJ778757 Populus euphratica cambium ... 170 6e-042
gb|AY124702.1| Populus alba glycosyl transferase protein A ... 98 7e-042
gb|BU812059.1|BU812059 UL91TG07 Populus leaf cDNA library P... 169 2e-041
gb|BI127989.1|BI127989 G069P39Y Populus cambium cDNA librar... 165 2e-040
gb|BU809805.1|BU809805 UL62PD02 Populus leaf cDNA library P... 165 2e-040
gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDN... 165 2e-040
gb|CK318880.1|CK318880 X9P04d06 Populus stem seasonal libra... 133 2e-036
gb|CX658367.1|CX658367 PO01034C09 Poplar SC cDNA library Po... 83 2e-036
gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal libra... 150 7e-036
gb|CX659010.1|CX659010 PO01025C10 Poplar SC cDNA library Po... 104 4e-032
gb|CX659267.1|CX659267 PO01028E05 Poplar SC cDNA library Po... 104 4e-032
gb|BP923962.1|BP923962 BP923962 full-length enriched poplar... 135 2e-031
gb|BI129508.1|BI129508 G091P66Y Populus cambium cDNA librar... 133 1e-030
gb|BU895500.1|BU895500 X025A03 Populus wood cDNA library Po... 107 5e-023
gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA librar... 107 6e-023
gb|BP929261.1|BP929261 BP929261 full-length enriched poplar... 105 2e-022
gb|BI127176.1|BI127176 G003P83Y Populus cambium cDNA librar... 96 2e-022
gb|AI164749.1|AI164749 A068P23U Hybrid aspen plasmid librar... 105 2e-022
gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid lib... 105 2e-022
gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Popul... 100 6e-022
gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Popu... 104 6e-022
gb|AI164976.1|AI164976 A071P67U Hybrid aspen plasmid librar... 101 3e-021
gb|CV226147.1|CV226147 WS0163.B21_G20 PT-DX-A-7 Populus tri... 100 8e-021
>gb|BU837261.1|BU837261 T096G03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 632
Score = 145 bits (312), Expect(3) = 2e-052
Identities = 54/69 (78%), Positives = 63/69 (91%)
Frame = +3 / +2
Query: 363 VLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRGGDSWVMS 542
+LNH+RIY+PELFP+L+KVVFLDDDVV+Q DLSPLW+IDL GKVNGAVETC+G D WVMS
Sbjct: 197 ILNHLRIYIPELFPNLDKVVFLDDDVVIQRDLSPLWEIDLKGKVNGAVETCKGEDEWVMS 376
Query: 543 KRFRNYLNF 569
K F+NY NF
Sbjct: 377 KHFKNYFNF 403
Score = 84.9 bits (179), Expect(2) = 2e-024
Identities = 40/68 (58%), Positives = 43/68 (63%)
Frame = -3 / -3
Query: 568 KFK*FLNLLDITQLSPPLQVSTAPLTFPDRSISQSGDRSCWXXXXXXXXXXXXXLGNNSG 389
K K*FL LDIT S PLQVSTAPLTFP RSISQSGD+S W G +SG
Sbjct: 402 KLK*FLKCLDITHSSSPLQVSTAPLTFPLRSISQSGDKSRWITTSSSRNTTLSRFGKSSG 223
Query: 388 MYIRI*LS 365
+YIR LS
Sbjct: 222 IYIRRWLS 199
Score = 70.7 bits (148), Expect(3) = 2e-052
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +3 / +1
Query: 171 IVEVKGVHQFDWLTQENVPVLESIETQRAARDRYHGS 281
IVEVKGVHQFDWLT+ENVPVLE++E R+ YHG+
Sbjct: 1 IVEVKGVHQFDWLTRENVPVLEAVENHNGVRNYYHGN 111
Score = 47.3 bits (97), Expect(2) = 2e-024
Identities = 24/35 (68%), Positives = 24/35 (68%)
Frame = -3 / -1
Query: 277 PW*RSLAAR*VSIDSSTGTFSCVNQSN**TPFTST 173
PW* L S SSTGTFS VNQSN *TPFTST
Sbjct: 107 PW**FLTPLWFSTASSTGTFSLVNQSNW*TPFTST 3
Score = 28.1 bits (55), Expect(3) = 2e-052
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +1
Query: 300 ANDSPRVFAAKLQAGSPTY 356
++ +PR FA+KLQA SP Y
Sbjct: 133 SDTTPRRFASKLQARSPKY 189
>gb|DT491778.1|DT491778 WS02548.C21_M04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_M04 3', mRNA sequence
Length = 880
Score = 123 bits (264), Expect(3) = 2e-047
Identities = 48/94 (51%), Positives = 67/94 (71%)
Frame = +3 / -3
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
H VL +DN+LAASVV+ ST++ S PE++VFH++TDKKTY M++WFA+N + A VEVK
Sbjct: 641 HVVLLTDNVLAASVVISSTVQHSANPEKLVFHIVTDKKTYIPMNAWFAINPIKSAAVEVK 462
Query: 186 GVHQFDWLTQENVPVLESIETQRAARDRYHGSRR 287
G+HQ+DW + NV V E +E R Y+ + R
Sbjct: 461 GLHQYDWSHEVNVHVKEMLEIHRLIWSHYNDNLR 360
Score = 71.6 bits (150), Expect(3) = 2e-047
Identities = 29/52 (55%), Positives = 39/52 (75%)
Frame = +3 / -3
Query: 393 ELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRGGDSWVMSKR 548
+LFP LNK+VFLD+DVVVQHD+S LW++DL+ K GAV GD++ K+
Sbjct: 164 QLFPDLNKIVFLDEDVVVQHDMSSLWELDLNKKKVGAVVDSWCGDNYGPKKK 9
Score = 32.2 bits (64), Expect(3) = 2e-047
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = +3 / -3
Query: 333 LQAGSPTYTNVLNHIRIYMPEL 398
L+A +P+ ++LNH+RIY+PE+
Sbjct: 320 LEALTPSCLSLLNHLRIYIPEV 255
>gb|AY278315.1| Populus alba ecotype 2AS11 glycosyl transferase protein A gene,
partial cds
Length = 804
Score = 99.6 bits (211), Expect(2) = 2e-042
Identities = 39/57 (68%), Positives = 48/57 (84%)
Frame = +3 / +1
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETC 515
+P Y ++LNH+R Y+PE+FP+L KVVFLDDDVVVQ DLS L+ IDL+ VNGAVETC
Sbjct: 544 NPKYLSMLNHLRFYIPEVFPALEKVVFLDDDVVVQKDLSGLFSIDLNSNVNGAVETC 714
Score = 92.7 bits (196), Expect(2) = 2e-042
Identities = 36/80 (45%), Positives = 52/80 (65%)
Frame = +3 / +1
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HF + SDNILA SVVV ST +S P+ +VFH++TD+ Y AM +WF++N+ +EV+
Sbjct: 235 HFCVFSDNILATSVVVNSTTLNSKNPDMVVFHLVTDEINYAAMKAWFSMNTFRGVTIEVQ 414
Query: 186 GVHQFDWLTQENVPVLESIE 245
F WL VPVL+ ++
Sbjct: 415 KFEDFKWLNASYVPVLKQLQ 474
>gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferase protein A gene,
partial cds
Length = 804
Score = 99.6 bits (211), Expect(2) = 5e-042
Identities = 39/57 (68%), Positives = 48/57 (84%)
Frame = +3 / +1
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETC 515
+P Y ++LNH+R Y+PE+FP+L KVVFLDDDVVVQ DLS L+ IDL+ VNGAVETC
Sbjct: 544 NPKYLSMLNHLRFYIPEVFPALEKVVFLDDDVVVQKDLSGLFSIDLNSNVNGAVETC 714
Score = 91.3 bits (193), Expect(2) = 5e-042
Identities = 36/80 (45%), Positives = 51/80 (63%)
Frame = +3 / +1
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HF + SDNILA SVVV ST +S P+ +VFH++TD+ Y AM +WF++N+ EV+
Sbjct: 235 HFCVFSDNILATSVVVNSTTLNSKNPDMVVFHLVTDEINYAAMKAWFSMNTFRGVTTEVQ 414
Query: 186 GVHQFDWLTQENVPVLESIE 245
F WL VPVL+ ++
Sbjct: 415 KFEDFKWLNASYVPVLKQLQ 474
>gb|AJ778757.1|AJ778757 AJ778757 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600005G03F1, mRNA sequence
Length = 435
Score = 170 bits (366), Expect = 6e-042
Identities = 67/98 (68%), Positives = 81/98 (82%)
Frame = +3 / +3
Query: 276 GSRRPITSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHD 455
GS + + D P + AAKLQ SP Y +V+NHIRI++PELFPSLNKVVFLDDD+VVQ D
Sbjct: 24 GSSAIVANNTDKPHIIAAKLQTLSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQSD 203
Query: 456 LSPLWDIDLSGKVNGAVETCRGGDSWVMSKRFRNYLNF 569
LSPLWDID++GKVNGAVETCRG D +VMSK+ ++YLNF
Sbjct: 204 LSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNF 317
>gb|AY124702.1| Populus alba glycosyl transferase protein A gene, partial cds
Length = 808
Score = 97.7 bits (207), Expect(2) = 7e-042
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +3 / +3
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETC 515
+P Y ++LNH+R Y+PE+FP+L KVVFLDDDVVV+ DLS L+ IDL+ VNGAVETC
Sbjct: 546 NPKYLSMLNHLRFYIPEVFPALEKVVFLDDDVVVKKDLSGLFSIDLNSNVNGAVETC 716
Score = 92.7 bits (196), Expect(2) = 7e-042
Identities = 36/80 (45%), Positives = 52/80 (65%)
Frame = +3 / +3
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HF + SDNILA SVVV ST +S P+ +VFH++TD+ Y AM +WF++N+ +EV+
Sbjct: 237 HFCVFSDNILATSVVVNSTTLNSKNPDMVVFHLVTDEINYAAMKAWFSMNTFRGVTIEVQ 416
Query: 186 GVHQFDWLTQENVPVLESIE 245
F WL VPVL+ ++
Sbjct: 417 KFEDFKWLNASYVPVLKQLQ 476
>gb|BU812059.1|BU812059 UL91TG07 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 611
Score = 169 bits (363), Expect = 2e-041
Identities = 69/107 (64%), Positives = 82/107 (76%)
Frame = +3 / +2
Query: 249 QRAARDRYHGSRRPITSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFL 428
QR GS + + + P V AAKLQ SP Y +V+NHIRI++PELFPSLNKVVFL
Sbjct: 71 QRVRSQFRGGSSAIVANNTEKPHVIAAKLQTLSPKYNSVMNHIRIHLPELFPSLNKVVFL 250
Query: 429 DDDVVVQHDLSPLWDIDLSGKVNGAVETCRGGDSWVMSKRFRNYLNF 569
DDD+VVQ DLSPLWDID+ GKVNGAVETCRG D +VMSK+ ++YLNF
Sbjct: 251 DDDIVVQSDLSPLWDIDMDGKVNGAVETCRGEDKFVMSKKLKSYLNF 391
>gb|BI127989.1|BI127989 G069P39Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 505
Score = 165 bits (355), Expect = 2e-040
Identities = 65/88 (73%), Positives = 76/88 (86%)
Frame = +3 / +3
Query: 306 DSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLS 485
+ P V AAKLQ SP Y +V+NHIRI++PELFPSLNKVVFLDDD+VVQ DLSPLWDID+
Sbjct: 12 EKPHVIAAKLQTLSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQSDLSPLWDIDMD 191
Query: 486 GKVNGAVETCRGGDSWVMSKRFRNYLNF 569
GKVNGAVETCRG D +VMSK+ ++YLNF
Sbjct: 192 GKVNGAVETCRGEDKFVMSKKLKSYLNF 275
>gb|BU809805.1|BU809805 UL62PD02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 412
Score = 165 bits (355), Expect = 2e-040
Identities = 68/107 (63%), Positives = 80/107 (74%)
Frame = +3 / +3
Query: 249 QRAARDRYHGSRRPITSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFL 428
QR GS + + + P V AAKLQ SP Y +V+NHIRI++PELFPSLNKVVFL
Sbjct: 69 QRVRSQFRGGSSAIVANNTEKPHVIAAKLQTLSPKYNSVMNHIRIHLPELFPSLNKVVFL 248
Query: 429 DDDVVVQHDLSPLWDIDLSGKVNGAVETCRGGDSWVMSKRFRNYLNF 569
DDD+VVQ DLSPLWDID+ GKVNGAVETCRG D VMSK+ ++Y NF
Sbjct: 249 DDDIVVQSDLSPLWDIDMDGKVNGAVETCRGEDKXVMSKKLKSYXNF 389
>gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G069P39 5', mRNA sequence
Length = 568
Score = 165 bits (355), Expect = 2e-040
Identities = 65/88 (73%), Positives = 76/88 (86%)
Frame = +3 / +3
Query: 306 DSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLS 485
+ P V AAKLQ SP Y +V+NHIRI++PELFPSLNKVVFLDDD+VVQ DLSPLWDID+
Sbjct: 12 EKPHVIAAKLQTLSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQSDLSPLWDIDMD 191
Query: 486 GKVNGAVETCRGGDSWVMSKRFRNYLNF 569
GKVNGAVETCRG D +VMSK+ ++YLNF
Sbjct: 192 GKVNGAVETCRGEDKFVMSKKLKSYLNF 275
>gb|CK318880.1|CK318880 X9P04d06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 655
Score = 133 bits (286), Expect(2) = 2e-036
Identities = 51/96 (53%), Positives = 69/96 (71%)
Frame = +3 / +2
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HFVLASDN+LAASVV S +++L+PE+ V H++TD+KTY M +WF+L+ LSPAI+EVK
Sbjct: 263 HFVLASDNVLAASVVASSLFQNALRPEKFVLHIVTDRKTYSPMQAWFSLHPLSPAIIEVK 442
Query: 186 GVHQFDWLTQENVPVLESIETQRAARDRYHGSRRPI 293
+H FDW + VPVLE++E R R+ G I
Sbjct: 443 ALHHFDWFAKGKVPVLEAMEKDLRVRSRFRGGSSAI 550
Score = 38.6 bits (78), Expect(2) = 2e-036
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3 / +2
Query: 276 GSRRPITSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPE 395
GS + + P + +KL P Y +V+NHIRI++PE
Sbjct: 536 GSSAIVEKVHR*PHIXRSKLXTLGPKYXSVMNHIRIHLPE 655
>gb|CX658367.1|CX658367 PO01034C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01034C09 5', mRNA sequence
Length = 698
Score = 82.6 bits (174), Expect(3) = 2e-036
Identities = 34/81 (41%), Positives = 52/81 (64%)
Frame = +3 / +1
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
H+ + SDN++AASVVV S ++++ +P + VFHV+TDK AM F L + A +EVK
Sbjct: 85 HYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVK 264
Query: 186 GVHQFDWLTQENVPVLESIET 248
V + +L VPVL+ +E+
Sbjct: 265 AVEDYKFLNSSYVPVLKQLES 327
Score = 73.0 bits (153), Expect(3) = 2e-036
Identities = 23/42 (54%), Positives = 36/42 (85%)
Frame = +3 / +1
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLW 470
+P Y ++LNH+R Y+PE++P L++++FLDDD+VVQ DL+ LW
Sbjct: 403 NPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQKDLTGLW 528
Score = 34.5 bits (69), Expect(3) = 2e-036
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3 / +2
Query: 474 IDLSGKVNGAVETCRG 521
ID+ GKVNGAVETC G
Sbjct: 533 IDMDGKVNGAVETCFG 580
>gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 150 bits (322), Expect = 7e-036
Identities = 58/74 (78%), Positives = 68/74 (91%)
Frame = +3 / +3
Query: 348 PTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRGGD 527
P Y +V+NHIRI++PELFPSLNKVVFLDDDVVVQ DLSPLWDID++GKVNGAVETCRG D
Sbjct: 6 PKYNSVMNHIRIHLPELFPSLNKVVFLDDDVVVQSDLSPLWDIDMNGKVNGAVETCRGED 185
Query: 528 SWVMSKRFRNYLNF 569
+VMSK+ ++YLNF
Sbjct: 186 KFVMSKKLKSYLNF 227
>gb|CX659010.1|CX659010 PO01025C10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025C10 5', mRNA sequence
Length = 654
Score = 104 bits (221), Expect(2) = 4e-032
Identities = 36/59 (61%), Positives = 50/59 (84%)
Frame = +3 / +3
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRG 521
+P Y ++LNH+R Y+PE++P L++++FLDDD+VVQ DL+ LW ID+ GKVNGAVETC G
Sbjct: 261 NPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQKDLTGLWKIDMDGKVNGAVETCFG 437
Score = 53.8 bits (111), Expect(2) = 4e-032
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3 / +3
Query: 66 RSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVKGVHQFDWLTQENVPVLESIE 245
+++ +P + VFHV+TDK AM F L + A +EVK V + +L VPVL+ +E
Sbjct: 3 KNAKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLKQLE 182
Query: 246 T 248
+
Sbjct: 183 S 185
>gb|CX659267.1|CX659267 PO01028E05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01028E05 5', mRNA sequence
Length = 623
Score = 104 bits (221), Expect(2) = 4e-032
Identities = 36/59 (61%), Positives = 50/59 (84%)
Frame = +3 / +3
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRG 521
+P Y ++LNH+R Y+PE++P L++++FLDDD+VVQ DL+ LW ID+ GKVNGAVETC G
Sbjct: 261 NPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQKDLTGLWKIDMDGKVNGAVETCFG 437
Score = 53.8 bits (111), Expect(2) = 4e-032
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3 / +3
Query: 66 RSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVKGVHQFDWLTQENVPVLESIE 245
+++ +P + VFHV+TDK AM F L + A +EVK V + +L VPVL+ +E
Sbjct: 3 KNAKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLKQLE 182
Query: 246 T 248
+
Sbjct: 183 S 185
>gb|BP923962.1|BP923962 BP923962 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-025_O03.f 5', mRNA sequence
Length = 484
Score = 135 bits (290), Expect = 2e-031
Identities = 52/100 (52%), Positives = 71/100 (71%)
Frame = +3 / +3
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HFVLASDN+LAASVV S +++L+PE+ V H+ITD+KTY M +WF+L+ LSPAI+EVK
Sbjct: 165 HFVLASDNVLAASVVANSLFQNALRPEKFVLHIITDRKTYSPMQAWFSLHPLSPAIIEVK 344
Query: 186 GVHQFDWLTQENVPVLESIETQRAARDRYHGSRRPITSAN 305
+H FDW + VPVLE++E R R+ G I ++
Sbjct: 345 ALHHFDWFAKGKVPVLEAMEKDLRVRSRFRGGSSAIVESS 464
>gb|BI129508.1|BI129508 G091P66Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 489
Score = 133 bits (284), Expect = 1e-030
Identities = 48/100 (48%), Positives = 73/100 (73%)
Frame = +3 / +2
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HFVLASDN+LAA+VV S ++++L+P++ V H+ITD+KTY M +WF+L+ L+PAI+EVK
Sbjct: 116 HFVLASDNVLAAAVVANSLVQNALRPQKFVLHIITDRKTYSPMQAWFSLHPLAPAIIEVK 295
Query: 186 GVHQFDWLTQENVPVLESIETQRAARDRYHGSRRPITSAN 305
+H FDW + VPV+E++E + R ++ G I + N
Sbjct: 296 ALHHFDWFAKGKVPVMEAMEKDQRVRSQFRGGSSAIVANN 415
>gb|BU895500.1|BU895500 X025A03 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 273
Score = 107 bits (229), Expect = 5e-023
Identities = 37/81 (45%), Positives = 60/81 (74%)
Frame = +3 / +2
Query: 36 AASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVKGVHQFDWLTQ 215
AA+VV S ++++L+P++ V H+ITD+KTY M +WF+L+ L+PAI+EVK +H FDW +
Sbjct: 2 AAAVVANSLVQNALRPQKFVLHIITDRKTYSPMQAWFSLHPLAPAIIEVKALHHFDWFAK 181
Query: 216 ENVPVLESIETQRAARDRYHG 278
VPV+E++E + R ++ G
Sbjct: 182 GKVPVMEAMEKDQRVRSQFRG 244
>gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 758
Score = 107 bits (228), Expect = 6e-023
Identities = 39/65 (60%), Positives = 52/65 (80%)
Frame = +3 / +1
Query: 324 AAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGA 503
A L+ +P Y ++LNH+R Y+PE++P L K++FLDDD+VVQ DL+PLW IDL G VNGA
Sbjct: 82 ADNLKYRNPKYLSMLNHLRFYLPEVYPKLGKILFLDDDIVVQKDLTPLWSIDLQGMVNGA 261
Query: 504 VETCR 518
VETC+
Sbjct: 262 VETCK 276
>gb|BP929261.1|BP929261 BP929261 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-095_F13.f 5', mRNA sequence
Length = 360
Score = 105 bits (225), Expect = 2e-022
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +3 / +3
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HFVLASDN+LAASVV S +++L+PE+ V H+ITD+KTY M +WF+L+ LSPAI+EVK
Sbjct: 165 HFVLASDNVLAASVVANSLFQNALRPEKFVLHIITDRKTYSPMQAWFSLHPLSPAIIEVK 344
Query: 186 GVHQF 200
+H F
Sbjct: 345 ALHHF 359
>gb|BI127176.1|BI127176 G003P83Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 524
Score = 96.4 bits (204), Expect(2) = 2e-022
Identities = 41/71 (57%), Positives = 50/71 (70%)
Frame = +3 / +1
Query: 249 QRAARDRYHGSRRPITSANDSPRVFAAKLQAGSPTYTNVLNHIRIYMPELFPSLNKVVFL 428
QR GS + + + P V AAKLQ SP Y +V+NHIRI++PELFPSLNKVV+L
Sbjct: 310 QRVRSQFRGGSSAIVANNTEKPHVIAAKLQTLSPKYNSVMNHIRIHLPELFPSLNKVVYL 489
Query: 429 DDDVVVQHDLS 461
DDD+VVQ DLS
Sbjct: 490 DDDIVVQSDLS 522
Score = 29.9 bits (59), Expect(2) = 2e-022
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3 / +1
Query: 6 HFVLASDNILAASVVVRST 62
HFVLASDN+LAA+ + T
Sbjct: 58 HFVLASDNVLAAACCCQFT 114
>gb|AI164749.1|AI164749 A068P23U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 375
Score = 105 bits (224), Expect = 2e-022
Identities = 38/59 (64%), Positives = 50/59 (84%)
Frame = +3 / +2
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRG 521
+P Y ++LNH+R Y+PE++P L+K++FLDDDVVVQ DL+ LW +DL GKVNGAVETC G
Sbjct: 137 NPKYLSMLNHLRFYLPEMYPKLHKILFLDDDVVVQKDLTGLWKVDLDGKVNGAVETCFG 313
>gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P23 5', mRNA sequence
Length = 579
Score = 105 bits (224), Expect = 2e-022
Identities = 38/59 (64%), Positives = 50/59 (84%)
Frame = +3 / +1
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRG 521
+P Y ++LNH+R Y+PE++P L+K++FLDDDVVVQ DL+ LW +DL GKVNGAVETC G
Sbjct: 181 NPKYLSMLNHLRFYLPEMYPKLHKILFLDDDVVVQKDLTGLWKVDLDGKVNGAVETCFG 357
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_K12 3', mRNA sequence
Length = 937
Score = 99.6 bits (211), Expect(2) = 6e-022
Identities = 39/57 (68%), Positives = 48/57 (84%)
Frame = +3 / -2
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETC 515
+P Y ++LNH+R Y+PE+FP+L KVVFLDDDVVVQ DLS L+ IDL+ VNGAVETC
Sbjct: 795 NPKYLSMLNHLRFYIPEVFPALEKVVFLDDDVVVQKDLSGLFSIDLNSNVNGAVETC 625
Score = 24.0 bits (46), Expect(2) = 6e-022
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +3 / -2
Query: 174 VEVKGVHQFDWLTQENVPVLESIE 245
+ V+ F WL VPVL+ ++
Sbjct: 936 MRVQNFEDFKWLNASYVPVLKQLQ 865
>gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_O22 3', mRNA sequence
Length = 918
Score = 104 bits (221), Expect = 6e-022
Identities = 36/59 (61%), Positives = 50/59 (84%)
Frame = +3 / -3
Query: 345 SPTYTNVLNHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRG 521
+P Y ++LNH+R Y+PE++P L++++FLDDD+VVQ DL+ LW ID+ GKVNGAVETC G
Sbjct: 892 NPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQKDLTGLWKIDMDGKVNGAVETCFG 716
>gb|AI164976.1|AI164976 A071P67U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 339
Score = 101 bits (216), Expect(2) = 3e-021
Identities = 39/89 (43%), Positives = 57/89 (64%)
Frame = +3 / +2
Query: 84 ERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVKGVHQFDWLTQENVPVLESIETQRAAR 263
++ V H+ITD+KTY M +WF+L+ L+PAI+EVK +H FDW + VPV+E++E + R
Sbjct: 35 QKFVLHIITDRKTYSPMQAWFSLHPLAPAIIEVKALHHFDWFAKGKVPVMEAMEKDQRVR 214
Query: 264 DRYHGSRRPITSANDSPRVFAAKLQAGSP 350
G + + + P V AAKLQ SP
Sbjct: 215 HSLEGVVCIVANNTEKPHVIAAKLQTLSP 301
Score = 18.5 bits (34), Expect(2) = 3e-021
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = +3 / +1
Query: 360 NVLNHIRI 383
+V+NHIRI
Sbjct: 310 SVMNHIRI 333
>gb|CV226147.1|CV226147 WS0163.B21_G20 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_G20
3', mRNA sequence
Length = 930
Score = 100 bits (213), Expect = 8e-021
Identities = 36/63 (57%), Positives = 53/63 (84%)
Frame = +3 / +1
Query: 6 HFVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVK 185
HFVLASDN+LAA+VV S ++++L+P++ V H+ITD+KTY M +WF+L+ L+PAI+EVK
Sbjct: 742 HFVLASDNVLAAAVVANSLVQNALRPQKFVLHIITDRKTYSPMQAWFSLHPLAPAIIEVK 921
Query: 186 GVH 194
+H
Sbjct: 922 ALH 930
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 281,760,148
Number of Sequences: 369679
Number of extensions: 3910294
Number of successful extensions: 46417
Number of sequences better than 1.0e-020: 32
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6754997742
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)