TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus t... 192 3e-048
gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus... 191 5e-048
gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populu... 191 5e-048
gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA librar... 191 5e-048
gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed l... 188 4e-047
gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Popul... 177 1e-043
gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Popu... 177 1e-043
gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Popu... 177 1e-043
gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus... 175 4e-043
gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Popul... 175 4e-043
gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Popu... 175 4e-043
gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus... 171 3e-042
gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichoca... 164 7e-040
gb|CV235386.1|CV235386 WS01218.B21_O19 PT-GT-FL-A-3 Populus... 161 5e-039
gb|DT491616.1|DT491616 WS02548.C21_E07 PT-MB-N-A-15 Populus... 161 5e-039
gb|DT520719.1|DT520719 WS02448.B21_F15 PTxD-ICC-N-A-14 Popu... 161 5e-039
gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library ... 158 3e-038
gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus t... 146 2e-034
gb|BP933938.1|BP933938 BP933938 full-length enriched poplar... 122 2e-027
gb|BU829781.1|BU829781 K067P31P Populus apical shoot cDNA l... 71 2e-023
>gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_O02 3', mRNA sequence
Length = 816
Score = 192 bits (413), Expect = 3e-048
Identities = 82/117 (70%), Positives = 92/117 (78%)
Frame = +3 / -2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + + D N AFKEVAII HPR GEYAFGFITS++VLQ + GDEELCSVYVPTNH
Sbjct: 764 SKQISSAISPDQNTTAFKEVAIIRHPRHGEYAFGFITSSLVLQRENGDEELCSVYVPTNH 585
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRV 353
LYIGD+FLVNS EIIRPNLSIREGIEIIVS GMTMPQV+ +E P S + L+RV
Sbjct: 584 LYIGDVFLVNSEEIIRPNLSIREGIEIIVSIGMTMPQVLSPIERIPHPSNRLPLNRV 414
Score = 131 bits (281), Expect = 5e-030
Identities = 66/107 (61%), Positives = 77/107 (71%)
Frame = -3 / +1
Query: 352 TLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LV 173
TL + + L G+ S T GIVIP ET+ISMPSRIDK GL+IS+E T+ SP+Y+ LV
Sbjct: 415 TLLRGSLLLG*GILSIGDNT*GIVIPIETMISMPSRIDKFGLMISSELTRNTSPMYRWLV 594
Query: 172 GT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXFXS 32
GT*TLHNSSSP S+ RT DVM PNAYSP RG +IATSL A F S
Sbjct: 595 GT*TLHNSSSPFSLWRTKDDVMKPNAYSP*RGCRIIATSLKAVVFWS 735
>gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_L02 3', mRNA sequence
Length = 715
Score = 191 bits (411), Expect = 5e-048
Identities = 80/117 (68%), Positives = 93/117 (79%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITST++LQ D DEELCSV+VPTNH
Sbjct: 658 SKQISAAISPDQNTTAFKEVAIIHHPRVGEYAFGFITSTVILQRDNEDEELCSVFVPTNH 479
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRV 353
LYIGDIFLVNS +IIRPNLSIREGIEIIVSGGMTMPQ+I +E +++ + L+R+
Sbjct: 478 LYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQMISPVERVVHQNEGIPLNRM 308
Score = 140 bits (300), Expect = 1e-032
Identities = 63/91 (69%), Positives = 73/91 (80%)
Frame = -3 / +3
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S+ I CGIVIPPET+IS+PSRID+ GLI+S EFT+ +SPIY+ VGT TLHNSSS LS+
Sbjct: 351 STGEIICGIVIPPETMISIPSRIDRFGLIMSLEFTRNISPIYRWFVGTKTLHNSSSSLSL 530
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXF 38
*R VDVM P AYSPTRG* +IATSL A F
Sbjct: 531 *RITVDVMKPKAYSPTRG**IIATSLKAVVF 623
>gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_K22 3', mRNA sequence
Length = 745
Score = 191 bits (411), Expect = 5e-048
Identities = 80/117 (68%), Positives = 93/117 (79%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITST++LQ D DEELCSV+VPTNH
Sbjct: 658 SKQISAAISPDQNTTAFKEVAIIHHPRVGEYAFGFITSTVILQRDNEDEELCSVFVPTNH 479
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRV 353
LYIGDIFLVNS +IIRPNLSIREGIEIIVSGGMTMPQ+I +E +++ + L+R+
Sbjct: 478 LYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQMISPVERVVHQNEGIPLNRM 308
Score = 140 bits (300), Expect = 1e-032
Identities = 63/91 (69%), Positives = 73/91 (80%)
Frame = -3 / +3
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S+ I CGIVIPPET+IS+PSRID+ GLI+S EFT+ +SPIY+ VGT TLHNSSS LS+
Sbjct: 351 STGEIICGIVIPPETMISIPSRIDRFGLIMSLEFTRNISPIYRWFVGTKTLHNSSSSLSL 530
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXF 38
*R VDVM P AYSPTRG* +IATSL A F
Sbjct: 531 *RITVDVMKPKAYSPTRG**IIATSLKAVVF 623
>gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone V017D11 3', mRNA sequence
Length = 765
Score = 191 bits (411), Expect = 5e-048
Identities = 80/117 (68%), Positives = 93/117 (79%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITST++LQ D DEELCSV+VPTNH
Sbjct: 627 SKQISAAISPDQNTTAFKEVAIIHHPRVGEYAFGFITSTVILQRDNEDEELCSVFVPTNH 448
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRV 353
LYIGDIFLVNS +IIRPNLSIREGIEIIVSGGMTMPQ+I +E +++ + L+R+
Sbjct: 447 LYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQMISPVERVVHQNEGIPLNRM 277
Score = 140 bits (300), Expect = 1e-032
Identities = 63/91 (69%), Positives = 73/91 (80%)
Frame = -3 / +2
Query: 310 SSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV 131
S+ I CGIVIPPET+IS+PSRID+ GLI+S EFT+ +SPIY+ VGT TLHNSSS LS+
Sbjct: 320 STGEIICGIVIPPETMISIPSRIDRFGLIMSLEFTRNISPIYRWFVGTKTLHNSSSSLSL 499
Query: 130 *RTMVDVMNPNAYSPTRG*LMIATSLNAXXF 38
*R VDVM P AYSPTRG* +IATSL A F
Sbjct: 500 *RITVDVMKPKAYSPTRG**IIATSLKAVVF 592
>gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL76PH09 3',
mRNA sequence
Length = 715
Score = 188 bits (405), Expect = 4e-047
Identities = 80/105 (76%), Positives = 88/105 (83%)
Frame = +3 / -1
Query: 39 NXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSA 218
N AFKEVAII HPR GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGD+FLVNS
Sbjct: 598 NTTAFKEVAIIRHPRHGEYAFGFITSSLVLQRENGDEELCSVYVPTNHLYIGDVFLVNSE 419
Query: 219 EIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRV 353
EIIRPNLSIREGIEIIVS GMTMPQV+ +E P S + L+RV
Sbjct: 418 EIIRPNLSIREGIEIIVSIGMTMPQVLSPIERIPHPSNRLPLNRV 284
Score = 133 bits (284), Expect = 2e-030
Identities = 66/105 (62%), Positives = 77/105 (73%)
Frame = -3 / +3
Query: 352 TLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LV 173
TL + + L G+ S T GIVIP ET+ISMPSRIDK GL+IS+E T+ SP+Y+ LV
Sbjct: 285 TLLRGSLLLG*GILSIGDNT*GIVIPIETMISMPSRIDKFGLMISSELTRNTSPMYRWLV 464
Query: 172 GT*TLHNSSSPLSV*RTMVDVMNPNAYSPTRG*LMIATSLNAXXF 38
GT*TLHNSSSP S+*RT DVM PNAYSP RG +IATSL A F
Sbjct: 465 GT*TLHNSSSPFSL*RTKDDVMKPNAYSP*RGCRIIATSLKAVVF 599
>gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_J18 3', mRNA sequence
Length = 874
Score = 177 bits (380), Expect = 1e-043
Identities = 69/103 (66%), Positives = 85/103 (82%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITS+++LQ G+EELC VYVPTNH
Sbjct: 556 SKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVILQNYSGEEELCCVYVPTNH 377
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFLVN+ ++IRPNLS+REGIEI+VSGGM+MPQ++ +L+
Sbjct: 376 LYIGDIFLVNTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLD 248
Score = 105 bits (224), Expect = 3e-022
Identities = 50/86 (58%), Positives = 61/86 (70%)
Frame = -3 / +3
Query: 289 GIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVDV 110
GI IPP+T IS+PSR ++LGLI S T+ +SP+Y+* VGT T HNSSSP R +V
Sbjct: 270 GIDIPPDTTISIPSRTERLGLITSLVLTRNISPMYR*FVGTYTQHNSSSPE*FWRMTDEV 449
Query: 109 MNPNAYSPTRG*LMIATSLNAXXFXS 32
MNP AYSP RG L++ATSL A F S
Sbjct: 450 MNPKAYSPIRGCLIMATSLKA*VFWS 527
>gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N17 3', mRNA sequence
Length = 871
Score = 177 bits (380), Expect = 1e-043
Identities = 69/103 (66%), Positives = 85/103 (82%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITS+++LQ G+EELC VYVPTNH
Sbjct: 562 SKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVILQNYSGEEELCCVYVPTNH 383
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFLVN+ ++IRPNLS+REGIEI+VSGGM+MPQ++ +L+
Sbjct: 382 LYIGDIFLVNTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLD 254
Score = 105 bits (224), Expect = 3e-022
Identities = 50/86 (58%), Positives = 61/86 (70%)
Frame = -3 / +3
Query: 289 GIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVDV 110
GI IPP+T IS+PSR ++LGLI S T+ +SP+Y+* VGT T HNSSSP R +V
Sbjct: 276 GIDIPPDTTISIPSRTERLGLITSLVLTRNISPMYR*FVGTYTQHNSSSPE*FWRMTDEV 455
Query: 109 MNPNAYSPTRG*LMIATSLNAXXFXS 32
MNP AYSP RG L++ATSL A F S
Sbjct: 456 MNPKAYSPIRGCLIMATSLKA*VFWS 533
>gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N19 3', mRNA sequence
Length = 876
Score = 177 bits (380), Expect = 1e-043
Identities = 69/103 (66%), Positives = 85/103 (82%)
Frame = +3 / -2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITS+++LQ G+EELC VYVPTNH
Sbjct: 563 SKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVILQNYSGEEELCCVYVPTNH 384
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFLVN+ ++IRPNLS+REGIEI+VSGGM+MPQ++ +L+
Sbjct: 383 LYIGDIFLVNTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLD 255
Score = 105 bits (224), Expect = 3e-022
Identities = 50/86 (58%), Positives = 61/86 (70%)
Frame = -3 / +1
Query: 289 GIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVDV 110
GI IPP+T IS+PSR ++LGLI S T+ +SP+Y+* VGT T HNSSSP R +V
Sbjct: 277 GIDIPPDTTISIPSRTERLGLITSLVLTRNISPMYR*FVGTYTQHNSSSPE*FWRMTDEV 456
Query: 109 MNPNAYSPTRG*LMIATSLNAXXFXS 32
MNP AYSP RG L++ATSL A F S
Sbjct: 457 MNPKAYSPIRGCLIMATSLKA*VFWS 534
>gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_O22 3', mRNA sequence
Length = 866
Score = 175 bits (376), Expect = 4e-043
Identities = 70/103 (67%), Positives = 83/103 (80%)
Frame = +3 / -3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITST+ LQ G+EELC VYVPTNH
Sbjct: 651 SKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSTVTLQNYSGEEELCCVYVPTNH 472
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFLV + ++IRPNLS+REGIEI+VSGGM+MPQV+ +L+
Sbjct: 471 LYIGDIFLVTTKDVIRPNLSVREGIEIVVSGGMSMPQVLSTLD 343
Score = 113 bits (241), Expect = 1e-024
Identities = 54/88 (61%), Positives = 64/88 (72%)
Frame = -3 / +2
Query: 295 TCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMV 116
T GI IPPET IS+PSR ++LGLI S T+ +SP+Y+* VGT*T H+SSSP R V
Sbjct: 359 TWGIDIPPETTISIPSRTERLGLITSLVVTRNISPMYR*FVGT*TQHSSSSPE*FWRVTV 538
Query: 115 DVMNPNAYSPTRG*LMIATSLNAXXFXS 32
+VMNP AYSP RG LM+ATSL A F S
Sbjct: 539 EVMNPKAYSPIRGCLMMATSLKA*VFWS 622
>gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 5', mRNA sequence
Length = 919
Score = 175 bits (376), Expect = 4e-043
Identities = 70/103 (67%), Positives = 83/103 (80%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITST+ LQ G+EELC VYVPTNH
Sbjct: 461 SKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSTVTLQNYSGEEELCCVYVPTNH 640
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFLV + ++IRPNLS+REGIEI+VSGGM+MPQV+ +L+
Sbjct: 641 LYIGDIFLVTTKDVIRPNLSVREGIEIVVSGGMSMPQVLSTLD 769
Score = 113 bits (241), Expect = 1e-024
Identities = 54/88 (61%), Positives = 64/88 (72%)
Frame = -3 / -2
Query: 295 TCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMV 116
T GI IPPET IS+PSR ++LGLI S T+ +SP+Y+* VGT*T H+SSSP R V
Sbjct: 753 TWGIDIPPETTISIPSRTERLGLITSLVVTRNISPMYR*FVGT*TQHSSSSPE*FWRVTV 574
Query: 115 DVMNPNAYSPTRG*LMIATSLNAXXFXS 32
+VMNP AYSP RG LM+ATSL A F S
Sbjct: 573 EVMNPKAYSPIRGCLMMATSLKA*VFWS 490
>gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 3', mRNA sequence
Length = 817
Score = 175 bits (376), Expect = 4e-043
Identities = 70/103 (67%), Positives = 83/103 (80%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITST+ LQ G+EELC VYVPTNH
Sbjct: 652 SKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSTVTLQNYSGEEELCCVYVPTNH 473
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
LYIGDIFLV + ++IRPNLS+REGIEI+VSGGM+MPQV+ +L+
Sbjct: 472 LYIGDIFLVTTKDVIRPNLSVREGIEIVVSGGMSMPQVLSTLD 344
Score = 113 bits (241), Expect = 1e-024
Identities = 54/88 (61%), Positives = 64/88 (72%)
Frame = -3 / +3
Query: 295 TCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMV 116
T GI IPPET IS+PSR ++LGLI S T+ +SP+Y+* VGT*T H+SSSP R V
Sbjct: 360 TWGIDIPPETTISIPSRTERLGLITSLVVTRNISPMYR*FVGT*TQHSSSSPE*FWRVTV 539
Query: 115 DVMNPNAYSPTRG*LMIATSLNAXXFXS 32
+VMNP AYSP RG LM+ATSL A F S
Sbjct: 540 EVMNPKAYSPIRGCLMMATSLKA*VFWS 623
>gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_N14 3', mRNA sequence
Length = 624
Score = 171 bits (369), Expect = 3e-042
Identities = 68/91 (74%), Positives = 80/91 (87%)
Frame = +3 / -1
Query: 39 NXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSA 218
N AFKEVAII HPR+GEYAFGFITST+ LQ G+EELC VYVPTNHLYIGDIFLV +
Sbjct: 621 NTQAFKEVAIIRHPRIGEYAFGFITSTVTLQNYSGEEELCCVYVPTNHLYIGDIFLVTTK 442
Query: 219 EIIRPNLSIREGIEIIVSGGMTMPQVIMSLE 311
++IRPNLS+REGIEI+VSGGM+MPQV+ +L+
Sbjct: 441 DVIRPNLSVREGIEIVVSGGMSMPQVLSTLD 349
Score = 112 bits (239), Expect = 3e-024
Identities = 53/86 (61%), Positives = 63/86 (73%)
Frame = -3 / +2
Query: 295 TCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMV 116
T GI IPPET IS+PSR ++LGLI S T+ +SP+Y+* VGT*T H+SSSP R V
Sbjct: 365 TWGIDIPPETTISIPSRTERLGLITSLVVTRNISPMYR*FVGT*TQHSSSSPE*FWRVTV 544
Query: 115 DVMNPNAYSPTRG*LMIATSLNAXXF 38
+VMNP AYSP RG LM+ATSL A F
Sbjct: 545 EVMNPKAYSPIRGCLMMATSLKA*VF 622
>gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_N05 5', mRNA sequence
Length = 772
Score = 164 bits (352), Expect = 7e-040
Identities = 69/91 (75%), Positives = 74/91 (81%)
Frame = +3 / +3
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPRVGEYAFGFITST++LQ D DEELCSV+VPTNH
Sbjct: 453 SKQISAAISPDQNTTAFKEVAIIHHPRVGEYAFGFITSTVILQRDNEDEELCSVFVPTNH 632
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSG 275
LYIGDIFLVNS +IIRPNLSIREGIEII SG
Sbjct: 633 LYIGDIFLVNSKDIIRPNLSIREGIEIIXSG 725
Score = 120 bits (256), Expect = 1e-026
Identities = 54/79 (68%), Positives = 63/79 (79%)
Frame = -3 / -1
Query: 274 PETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVDVMNPNA 95
PE +IS+PSRID+ GLI+S EFT+ +SPIY+ VGT TLHNSSS LS+*R VDVM P A
Sbjct: 724 PEXMISIPSRIDRFGLIMSLEFTRNISPIYRWFVGTKTLHNSSSSLSL*RITVDVMKPKA 545
Query: 94 YSPTRG*LMIATSLNAXXF 38
YSPTRG* +IATSL A F
Sbjct: 544 YSPTRG**IIATSLKAVVF 488
>gb|CV235386.1|CV235386 WS01218.B21_O19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_O19 3', mRNA sequence
Length = 722
Score = 161 bits (346), Expect = 5e-039
Identities = 67/129 (51%), Positives = 91/129 (70%)
Frame = +3 / -2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D + AFKEVAII HPR GEYAFGFITS ++L+ G EELC VYVPTNH
Sbjct: 685 SKQISAAISPDQSSNAFKEVAIIRHPRHGEYAFGFITSIVILRGSMGAEELCCVYVPTNH 506
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRVRTV 362
LY+GDIFL++S +I+RPNLS+REGIEI++SGGM++PQ++ +++ + + V V
Sbjct: 505 LYLGDIFLISSKDILRPNLSVREGIEIVISGGMSIPQILNTMDSHAVHATGLGKFAVPPV 326
Query: 363 *LYEACMKV 389
*L+ +V
Sbjct: 325 *LFSTICQV 299
Score = 104 bits (222), Expect = 6e-022
Identities = 49/82 (59%), Positives = 61/82 (74%)
Frame = -3 / +3
Query: 292 CGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVD 113
CGI IPPE IS+PSR ++LGL IS E +K+SP + LVGT*T H+SS+P+ R +D
Sbjct: 396 CGIDIPPEMTISIPSRTERLGLKISFELMRKISPR*RWLVGT*TQHSSSAPMLPRRITMD 575
Query: 112 VMNPNAYSPTRG*LMIATSLNA 47
V+NP AYSP RG LM+ATSL A
Sbjct: 576 VINPKAYSP*RGCLMMATSLKA 641
>gb|DT491616.1|DT491616 WS02548.C21_E07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_E07 3', mRNA sequence
Length = 834
Score = 161 bits (346), Expect = 5e-039
Identities = 67/129 (51%), Positives = 91/129 (70%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D + AFKEVAII HPR GEYAFGFITS ++L+ G EELC VYVPTNH
Sbjct: 681 SKQISAAISPDQSSNAFKEVAIIRHPRHGEYAFGFITSIVILRGSMGAEELCCVYVPTNH 502
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRVRTV 362
LY+GDIFL++S +I+RPNLS+REGIEI++SGGM++PQ++ +++ + + V V
Sbjct: 501 LYLGDIFLISSKDILRPNLSVREGIEIVISGGMSIPQILNTMDSHAVHATGLGKFAVPPV 322
Query: 363 *LYEACMKV 389
*L+ +V
Sbjct: 321 *LFSTICQV 295
Score = 104 bits (222), Expect = 6e-022
Identities = 49/82 (59%), Positives = 61/82 (74%)
Frame = -3 / +2
Query: 292 CGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVD 113
CGI IPPE IS+PSR ++LGL IS E +K+SP + LVGT*T H+SS+P+ R +D
Sbjct: 392 CGIDIPPEMTISIPSRTERLGLKISFELMRKISPR*RWLVGT*TQHSSSAPMLPRRITMD 571
Query: 112 VMNPNAYSPTRG*LMIATSLNA 47
V+NP AYSP RG LM+ATSL A
Sbjct: 572 VINPKAYSP*RGCLMMATSLKA 637
>gb|DT520719.1|DT520719 WS02448.B21_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_F15 3', mRNA sequence
Length = 874
Score = 161 bits (346), Expect = 5e-039
Identities = 67/129 (51%), Positives = 91/129 (70%)
Frame = +3 / -1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D + AFKEVAII HPR GEYAFGFITS ++L+ G EELC VYVPTNH
Sbjct: 715 SKQISAAISPDQSSNAFKEVAIIRHPRHGEYAFGFITSIVILRGSMGAEELCCVYVPTNH 536
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEPTPRKSQNVRLDRVRTV 362
LY+GDIFL++S +I+RPNLS+REGIEI++SGGM++PQ++ +++ + + V V
Sbjct: 535 LYLGDIFLISSKDILRPNLSVREGIEIVISGGMSIPQILNTMDSHAVHATGLGKFAVPPV 356
Query: 363 *LYEACMKV 389
*L+ +V
Sbjct: 355 *LFSTICQV 329
Score = 104 bits (222), Expect = 6e-022
Identities = 49/82 (59%), Positives = 61/82 (74%)
Frame = -3 / +3
Query: 292 CGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVD 113
CGI IPPE IS+PSR ++LGL IS E +K+SP + LVGT*T H+SS+P+ R +D
Sbjct: 426 CGIDIPPEMTISIPSRTERLGLKISFELMRKISPR*RWLVGT*TQHSSSAPMLPRRITMD 605
Query: 112 VMNPNAYSPTRG*LMIATSLNA 47
V+NP AYSP RG LM+ATSL A
Sbjct: 606 VINPKAYSP*RGCLMMATSLKA 671
>gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 734
Score = 158 bits (340), Expect = 3e-038
Identities = 64/94 (68%), Positives = 74/94 (78%)
Frame = +3 / +2
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTDKGDEELCSVYVPTNH 182
S + D N AFKEVAII HPR+GEYAFGFITST+ LQ G+E LC VYVPTNH
Sbjct: 452 SKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSTVTLQNYSGEEVLCCVYVPTNH 631
Query: 183 LYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMT 284
LYIGDIFLV + ++IRPNLS+REGIEI+VSGGM+
Sbjct: 632 LYIGDIFLVTTKDVIRPNLSVREGIEIVVSGGMS 733
Score = 107 bits (228), Expect = 9e-023
Identities = 50/83 (60%), Positives = 61/83 (73%)
Frame = -3 / -3
Query: 280 IPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LVGT*TLHNSSSPLSV*RTMVDVMNP 101
IPPET IS+PSR ++LGLI S T+ +SP+Y+* VGT*T H++SSP R V+VMNP
Sbjct: 729 IPPETTISIPSRTERLGLITSLVVTRNISPMYR*FVGT*TQHSTSSPE*FWRVTVEVMNP 550
Query: 100 NAYSPTRG*LMIATSLNAXXFXS 32
AYSP RG LM+ATSL A F S
Sbjct: 549 KAYSPIRGCLMMATSLKA*VFWS 481
>gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_O23 3', mRNA sequence
Length = 638
Score = 146 bits (313), Expect = 2e-034
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +3 / -1
Query: 105 FITSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMT 284
FITS++VLQ + GDEELCSVYVPTNHLYIGD+FLVNS EIIRPNLSIREGIEIIVS GMT
Sbjct: 629 FITSSLVLQRENGDEELCSVYVPTNHLYIGDVFLVNSEEIIRPNLSIREGIEIIVSIGMT 450
Query: 285 MPQVIMSLEPTPRKSQNVRLDRV 353
MPQV+ +E P S + L+RV
Sbjct: 449 MPQVLSPIERIPHPSNRLPLNRV 381
Score = 102 bits (218), Expect = 2e-021
Identities = 51/82 (62%), Positives = 61/82 (74%)
Frame = -3 / +1
Query: 352 TLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK*LV 173
TL + + L G+ S T GIVIP ET+ISMPSRIDK GL+IS+E T+ SP+Y+ LV
Sbjct: 382 TLLRGSLLLG*GILSIGDNT*GIVIPIETMISMPSRIDKFGLMISSELTRNTSPMYRWLV 561
Query: 172 GT*TLHNSSSPLSV*RTMVDVM 107
GT*TLHNSSSP S+*RT DVM
Sbjct: 562 GT*TLHNSSSPFSL*RTKDDVM 627
>gb|BP933938.1|BP933938 BP933938 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-058_G12.r 3', mRNA sequence
Length = 568
Score = 122 bits (262), Expect = 2e-027
Identities = 51/73 (69%), Positives = 61/73 (83%)
Frame = +3 / -1
Query: 135 DKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMPQVIMSLEP 314
D DEELCSV+ PTNHLYIGDIFLVNS +IIRPNLSIREGIEIIVSGGMTMPQ+I +E
Sbjct: 565 DNEDEELCSVFGPTNHLYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQMISPVER 386
Query: 315 TPRKSQNVRLDRV 353
+++ + L+R+
Sbjct: 385 VVHQNEGIPLNRM 347
>gb|BU829781.1|BU829781 K067P31P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 535
Score = 70.7 bits (148), Expect(2) = 2e-023
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +3 / +1
Query: 3 SXXVXTXXXXDXNXXAFKEVAIISHPRVGEYAFGFITSTMVLQTD 137
S + D N AFKEVAII HPRVGEYAFGFITST++LQ D
Sbjct: 325 SKQISAAISPDQNTTAFKEVAIIHHPRVGEYAFGFITSTVILQRD 459
Score = 58.3 bits (121), Expect(2) = 2e-023
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3 / +2
Query: 144 DEELCSVYVPTNHLYIGDIFLVN 212
DEELCSV+VPTNHLYIGDIFLVN
Sbjct: 467 DEELCSVFVPTNHLYIGDIFLVN 535
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 366,892,608
Number of Sequences: 369679
Number of extensions: 5332474
Number of successful extensions: 38563
Number of sequences better than 1.0e-020: 22
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9715916000
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)