TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.2
(860 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 64 5e-024
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 64 5e-024
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 64 5e-024
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 64 5e-024
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 64 5e-024
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 64 5e-024
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 64 5e-024
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 62 1e-023
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 63.8 bits (133), Expect(4) = 5e-024
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -1
Query: 102 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 230
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 590 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 462
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -1
Query: 339 SDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTV 458
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 29.0 bits (57), Expect(4) = 5e-024
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3 / -1
Query: 438 EGGTKTVYDDVIPAGWKPNTAY 503
E G V VIPAGW P Y
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTY 180
Score = 26.3 bits (51), Expect(4) = 5e-024
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 39 AKCSGKPVVVYITD 80
A CSG PV V ITD
Sbjct: 662 AACSGNPVTVVITD 621
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 63.8 bits (133), Expect(4) = 5e-024
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -3
Query: 102 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 230
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 642 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 514
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -3
Query: 339 SDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTV 458
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 399 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 280
Score = 29.0 bits (57), Expect(4) = 5e-024
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3 / -3
Query: 438 EGGTKTVYDDVIPAGWKPNTAY 503
E G V VIPAGW P Y
Sbjct: 297 ESGKTIVASGVIPAGWAPGQTY 232
Score = 26.3 bits (51), Expect(4) = 5e-024
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -3
Query: 39 AKCSGKPVVVYITD 80
A CSG PV V ITD
Sbjct: 714 AACSGNPVTVVITD 673
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 63.8 bits (133), Expect(4) = 5e-024
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -2
Query: 102 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 230
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 590 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 462
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -2
Query: 339 SDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTV 458
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 29.0 bits (57), Expect(4) = 5e-024
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3 / -2
Query: 438 EGGTKTVYDDVIPAGWKPNTAY 503
E G V VIPAGW P Y
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTY 180
Score = 26.3 bits (51), Expect(4) = 5e-024
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -2
Query: 39 AKCSGKPVVVYITD 80
A CSG PV V ITD
Sbjct: 662 AACSGNPVTVVITD 621
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 63.8 bits (133), Expect(4) = 5e-024
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -1
Query: 102 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 230
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 570 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 442
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -1
Query: 339 SDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTV 458
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 208
Score = 29.0 bits (57), Expect(4) = 5e-024
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3 / -1
Query: 438 EGGTKTVYDDVIPAGWKPNTAY 503
E G V VIPAGW P Y
Sbjct: 225 ESGKTIVASGVIPAGWAPGQTY 160
Score = 26.3 bits (51), Expect(4) = 5e-024
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 39 AKCSGKPVVVYITD 80
A CSG PV V ITD
Sbjct: 642 AACSGNPVTVVITD 601
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 63.8 bits (133), Expect(4) = 5e-024
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -3
Query: 102 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 230
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 569 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 441
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -3
Query: 339 SDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTV 458
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 326 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 207
Score = 29.0 bits (57), Expect(4) = 5e-024
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3 / -3
Query: 438 EGGTKTVYDDVIPAGWKPNTAY 503
E G V VIPAGW P Y
Sbjct: 224 ESGKTIVASGVIPAGWAPGQTY 159
Score = 26.3 bits (51), Expect(4) = 5e-024
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -3
Query: 39 AKCSGKPVVVYITD 80
A CSG PV V ITD
Sbjct: 641 AACSGNPVTVVITD 600
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 63.8 bits (133), Expect(4) = 5e-024
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -1
Query: 102 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 230
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 666 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 538
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -1
Query: 339 SDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTV 458
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 423 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 304
Score = 29.0 bits (57), Expect(4) = 5e-024
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3 / -1
Query: 438 EGGTKTVYDDVIPAGWKPNTAY 503
E G V VIPAGW P Y
Sbjct: 321 ESGKTIVASGVIPAGWAPGQTY 256
Score = 26.3 bits (51), Expect(4) = 5e-024
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 39 AKCSGKPVVVYITD 80
A CSG PV V ITD
Sbjct: 738 AACSGNPVTVVITD 697
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 63.8 bits (133), Expect(4) = 5e-024
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -2
Query: 102 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 230
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 594 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 466
Score = 46.9 bits (96), Expect(4) = 5e-024
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -2
Query: 339 SDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTV 458
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 351 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 232
Score = 29.0 bits (57), Expect(4) = 5e-024
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3 / -2
Query: 438 EGGTKTVYDDVIPAGWKPNTAY 503
E G V VIPAGW P Y
Sbjct: 249 ESGKTIVASGVIPAGWAPGQTY 184
Score = 26.3 bits (51), Expect(4) = 5e-024
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -2
Query: 39 AKCSGKPVVVYITD 80
A CSG PV V ITD
Sbjct: 666 AACSGNPVTVVITD 625
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 62.5 bits (130), Expect(4) = 1e-023
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +3
Query: 102 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 230
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 84 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 212
Score = 46.9 bits (96), Expect(4) = 1e-023
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / +3
Query: 339 SDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGGTKTV 458
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 446
Score = 29.0 bits (57), Expect(4) = 1e-023
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3 / +3
Query: 438 EGGTKTVYDDVIPAGWKPNTAY 503
E G V VIPAGW P Y
Sbjct: 429 ESGKTIVASGVIPAGWAPGQTY 494
Score = 26.3 bits (51), Expect(4) = 1e-023
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 39 AKCSGKPVVVYITD 80
A CSG PV V ITD
Sbjct: 12 AACSGNPVTVVITD 53
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 396,143,880
Number of Sequences: 369679
Number of extensions: 5422601
Number of successful extensions: 37290
Number of sequences better than 1.0e-020: 8
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11367621720
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)