TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.1
(1003 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 64 2e-035
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 64 2e-032
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 64 3e-032
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 64 8e-031
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 64 8e-031
gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Po... 62 3e-030
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 64 9e-030
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 64 2e-026
gb|CX654070.1|CX654070 PO02012F04 Poplar SC cDNA library Po... 62 9e-025
gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Po... 62 9e-025
gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Po... 52 2e-024
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 64 3e-022
gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Po... 62 4e-022
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 62 7e-022
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 63.8 bits (133), Expect(6) = 2e-035
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -1
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 590 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 462
Score = 47.3 bits (97), Expect(6) = 2e-035
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPITVRLTTEGGTKTV 788
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 46.4 bits (95), Expect(6) = 2e-035
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3 / -1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +APF+S + G I+K G GCG+C+++KC
Sbjct: 773 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 678
Score = 32.7 bits (65), Expect(6) = 2e-035
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / -1
Query: 174 SDWLDAKATWYGKPT 218
SDW A ATWYG PT
Sbjct: 860 SDWSPAGATWYGSPT 816
Score = 26.3 bits (51), Expect(6) = 2e-035
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 662 AACSGNPVTVVITD 621
Score = 22.6 bits (43), Expect(6) = 2e-035
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3 / -1
Query: 768 EGGTKTVYDDVIPAEWKP 821
E G V VIPA W P
Sbjct: 245 ESGKTIVASGVIPAGWAP 192
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 63.8 bits (133), Expect(6) = 2e-032
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -1
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 570 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 442
Score = 47.3 bits (97), Expect(6) = 2e-032
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPITVRLTTEGGTKTV 788
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 208
Score = 46.4 bits (95), Expect(6) = 2e-032
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3 / -1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +APF+S + G I+K G GCG+C+++KC
Sbjct: 753 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 658
Score = 26.3 bits (51), Expect(6) = 2e-032
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 642 AACSGNPVTVVITD 601
Score = 22.6 bits (43), Expect(6) = 2e-032
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3 / -1
Query: 768 EGGTKTVYDDVIPAEWKP 821
E G V VIPA W P
Sbjct: 225 ESGKTIVASGVIPAGWAP 172
Score = 22.6 bits (43), Expect(6) = 2e-032
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3 / -1
Query: 189 AKATWYGKPT 218
A TWYG PT
Sbjct: 825 AGGTWYGSPT 796
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 63.8 bits (133), Expect(6) = 3e-032
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -3
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 642 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 514
Score = 47.3 bits (97), Expect(6) = 3e-032
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -3
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPITVRLTTEGGTKTV 788
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 399 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 280
Score = 44.6 bits (91), Expect(6) = 3e-032
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3 / -3
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +APF S + G I+K G GCG+C+++KC
Sbjct: 825 VEQAPFFSFISAGGDSIYKSGQGCGACYQVKC 730
Score = 26.3 bits (51), Expect(6) = 3e-032
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -3
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 714 AACSGNPVTVVITD 673
Score = 23.5 bits (45), Expect(6) = 3e-032
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3 / -3
Query: 195 ATWYGKPT 218
ATWYG PT
Sbjct: 891 ATWYGSPT 868
Score = 22.6 bits (43), Expect(6) = 3e-032
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3 / -3
Query: 768 EGGTKTVYDDVIPAEWKP 821
E G V VIPA W P
Sbjct: 297 ESGKTIVASGVIPAGWAP 244
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 63.8 bits (133), Expect(5) = 8e-031
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 590 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 462
Score = 47.3 bits (97), Expect(5) = 8e-031
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -2
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPITVRLTTEGGTKTV 788
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 46.4 bits (95), Expect(5) = 8e-031
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3 / -2
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +APF+S + G I+K G GCG+C+++KC
Sbjct: 773 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 678
Score = 26.3 bits (51), Expect(5) = 8e-031
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -2
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 662 AACSGNPVTVVITD 621
Score = 22.6 bits (43), Expect(5) = 8e-031
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3 / -2
Query: 768 EGGTKTVYDDVIPAEWKP 821
E G V VIPA W P
Sbjct: 245 ESGKTIVASGVIPAGWAP 192
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 63.8 bits (133), Expect(5) = 8e-031
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 449 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 577
Score = 46.4 bits (95), Expect(5) = 8e-031
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +APF+S + G I+K G GCG+C+++KC
Sbjct: 266 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 361
Score = 37.3 bits (75), Expect(5) = 8e-031
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +3 / +1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPI 749
SD++ P++ SWGA+W+ D+ ++ P+
Sbjct: 691 SDSWVPMQKSWGAVWKLDAGSLLRAPL 771
Score = 32.7 bits (65), Expect(5) = 8e-031
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 174 SDWLDAKATWYGKPT 218
SDW A ATWYG PT
Sbjct: 179 SDWSPAGATWYGSPT 223
Score = 26.3 bits (51), Expect(5) = 8e-031
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 377 AACSGNPVTVVITD 418
>gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B10 5', mRNA sequence
Length = 639
Score = 62.5 bits (130), Expect(5) = 3e-030
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 428 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 556
Score = 47.3 bits (97), Expect(5) = 3e-030
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +2
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +APF+S+ + G I+K G GCG+C+++KC
Sbjct: 245 VEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 340
Score = 35.9 bits (72), Expect(5) = 3e-030
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3 / +2
Query: 552 GSKVTFHLEKGCNPNYLALLVK 617
G KVTFH++ G NP Y A LV+
Sbjct: 551 GKKVTFHVDSGSNPYYFATLVE 616
Score = 32.7 bits (65), Expect(5) = 3e-030
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 174 SDWLDAKATWYGKPT 218
SDW A ATWYG PT
Sbjct: 158 SDWSPAGATWYGSPT 202
Score = 26.3 bits (51), Expect(5) = 3e-030
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 356 AACSGNPVTVVITD 397
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 63.8 bits (133), Expect(5) = 9e-030
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -3
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 569 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 441
Score = 47.3 bits (97), Expect(5) = 9e-030
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -3
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPITVRLTTEGGTKTV 788
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 326 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 207
Score = 42.8 bits (87), Expect(5) = 9e-030
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3 / -3
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +AP +S + G I+K G GCG+C+++KC
Sbjct: 752 VEQAPSSSFISAGGDSIYKSGQGCGACYQVKC 657
Score = 26.3 bits (51), Expect(5) = 9e-030
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -3
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 641 AACSGNPVTVVITD 600
Score = 22.6 bits (43), Expect(5) = 9e-030
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3 / -3
Query: 768 EGGTKTVYDDVIPAEWKP 821
E G V VIPA W P
Sbjct: 224 ESGKTIVASGVIPAGWAP 171
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 63.8 bits (133), Expect(5) = 2e-026
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 594 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 466
Score = 47.3 bits (97), Expect(5) = 2e-026
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -2
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPITVRLTTEGGTKTV 788
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 351 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 232
Score = 31.3 bits (62), Expect(5) = 2e-026
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 318 KDGLGCGSCFEIKC 359
K G GCG+C+++KC
Sbjct: 723 KSGQGCGACYQVKC 682
Score = 26.3 bits (51), Expect(5) = 2e-026
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -2
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 666 AACSGNPVTVVITD 625
Score = 22.6 bits (43), Expect(5) = 2e-026
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3 / -2
Query: 768 EGGTKTVYDDVIPAEWKP 821
E G V VIPA W P
Sbjct: 249 ESGKTIVASGVIPAGWAP 196
>gb|CX654070.1|CX654070 PO02012F04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012F04 5', mRNA sequence
Length = 591
Score = 62.5 bits (130), Expect(4) = 9e-025
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 428 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 556
Score = 47.3 bits (97), Expect(4) = 9e-025
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +2
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +APF+S+ + G I+K G GCG+C+++KC
Sbjct: 245 VEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 340
Score = 32.7 bits (65), Expect(4) = 9e-025
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 174 SDWLDAKATWYGKPT 218
SDW A ATWYG PT
Sbjct: 158 SDWSPAGATWYGSPT 202
Score = 26.3 bits (51), Expect(4) = 9e-025
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 356 AACSGNPVTVVITD 397
>gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060H08 5', mRNA sequence
Length = 581
Score = 62.5 bits (130), Expect(4) = 9e-025
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +1
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 400 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 528
Score = 47.3 bits (97), Expect(4) = 9e-025
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +APF+S+ + G I+K G GCG+C+++KC
Sbjct: 217 VEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 312
Score = 32.7 bits (65), Expect(4) = 9e-025
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 174 SDWLDAKATWYGKPT 218
SDW A ATWYG PT
Sbjct: 130 SDWSPAGATWYGSPT 174
Score = 26.3 bits (51), Expect(4) = 9e-025
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +1
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 328 AACSGNPVTVVITD 369
>gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 767
Score = 52.4 bits (108), Expect(4) = 2e-024
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
HFDL+G AFG MA GE +LR G + + +RR CKY K
Sbjct: 220 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYPGK 342
Score = 46.9 bits (96), Expect(4) = 2e-024
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +3 / +1
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITD 410
V+ PF + + +FK+G GCG+C++++C + CS + V + +TD
Sbjct: 37 VDVKPFRARVGAVSPVLFKNGEGCGACYKVRCLDKSICSRRAVTIIVTD 183
Score = 42.3 bits (86), Expect(4) = 2e-024
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3 / +1
Query: 552 GSKVTFHLEKGCNPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
G + FH+ +G +L+LLV++ +E G + + H WGA W
Sbjct: 337 GKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 498
Score = 25.8 bits (50), Expect(4) = 2e-024
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3 / +1
Query: 732 PIKGPITVRLTTEGGTKTV 788
P+KGP +V+LTT +T+
Sbjct: 514 PLKGPFSVKLTTLSTRRTL 570
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 63.8 bits (133), Expect(4) = 3e-022
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -1
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 666 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 538
Score = 47.3 bits (97), Expect(4) = 3e-022
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / -1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPITVRLTTEGGTKTV 788
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 423 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 304
Score = 26.3 bits (51), Expect(4) = 3e-022
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 738 AACSGNPVTVVITD 697
Score = 22.6 bits (43), Expect(4) = 3e-022
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3 / -1
Query: 768 EGGTKTVYDDVIPAEWKP 821
E G V VIPA W P
Sbjct: 321 ESGKTIVASGVIPAGWAP 268
>gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043E09 5', mRNA sequence
Length = 621
Score = 62.5 bits (130), Expect(3) = 4e-022
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 428 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 556
Score = 47.3 bits (97), Expect(3) = 4e-022
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3 / +2
Query: 264 VNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC 359
V +APF+S+ + G I+K G GCG+C+++KC
Sbjct: 245 VEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 340
Score = 32.7 bits (65), Expect(3) = 4e-022
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 174 SDWLDAKATWYGKPT 218
SDW A ATWYG PT
Sbjct: 158 SDWSPAGATWYGSPT 202
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 62.5 bits (130), Expect(4) = 7e-022
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +3
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 84 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 212
Score = 47.3 bits (97), Expect(4) = 7e-022
Identities = 14/40 (35%), Positives = 29/40 (72%)
Frame = +3 / +3
Query: 669 SDTYEPLKHSWGAIWRKDSDKPIKGPITVRLTTEGGTKTV 788
SD++ P++ SWGA+W+ D+ ++ P++++LT+ KT+
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 446
Score = 26.3 bits (51), Expect(4) = 7e-022
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 369 AECSGKPVVVYITD 410
A CSG PV V ITD
Sbjct: 12 AACSGNPVTVVITD 53
Score = 22.6 bits (43), Expect(4) = 7e-022
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3 / +3
Query: 768 EGGTKTVYDDVIPAEWKP 821
E G V VIPA W P
Sbjct: 429 ESGKTIVASGVIPAGWAP 482
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 501,982,484
Number of Sequences: 369679
Number of extensions: 7883653
Number of successful extensions: 56686
Number of sequences better than 1.0e-020: 15
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 13498772280
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)