TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204272.2.1
(739 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA libr... 104 7e-045
gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus... 103 2e-042
gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus ... 104 5e-040
gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus... 103 1e-039
gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated wit... 82 2e-037
gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus t... 104 3e-037
gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library P... 89 6e-037
gb|CA823251.1|CA823251 R23A11 two-month-old roots from clon... 94 2e-036
gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library f... 100 5e-034
gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichoca... 73 1e-033
gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated wit... 79 2e-026
gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, comple... 70 1e-023
gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populu... 104 1e-023
>gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P61 3', mRNA sequence
Length = 835
Score = 104 bits (221), Expect(4) = 7e-045
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = -3 / -1
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++NFG+ V L +S GL S GST TVLTS+++MDENSF+NP KVVP ++
Sbjct: 484 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 305
Query: 296 DLSNAAEQMQVTLAPRSFSSFDL 228
L NA + M V L+P S +SFDL
Sbjct: 304 MLENADKDMDVVLSPYSLTSFDL 236
Score = 73.5 bits (154), Expect(4) = 7e-045
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3 / -1
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RWNPDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 661 RWNPDAIVFNSSMHYGTPSYWVQKFFRESSGA 566
Score = 68.4 bits (143), Expect(4) = 1e-034
Identities = 35/81 (43%), Positives = 45/81 (55%)
Frame = +1 / +3
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALILAWS 408
+SNE+KE G S T + +A + GTT G KEFSSI +V TV VDP L+ +
Sbjct: 237 KSNEVKEYGESTTSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 416
Query: 409 PLVEIVRVTASDPKFMTFTLR 471
P +E +R T PKF F R
Sbjct: 417 PSMETLRFTLLFPKFTIFIFR 479
Score = 62.5 bits (130), Expect(4) = 1e-034
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1 / +3
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFHL 654
+APLDS K+ C Q*LGVP*C ELKTIASGFHL
Sbjct: 564 VAPLDSLKNFCTQ*LGVP*CIDELKTIASGFHL 662
Score = 46.0 bits (94), Expect(4) = 1e-034
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1 / +3
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFSSP+RK ASA+ A+RLP+PAS
Sbjct: 705 STISLFFSSPIRKPASASAAKRLPVPAS 788
Score = 34.1 bits (68), Expect(4) = 7e-045
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1 / -2
Query: 727 EVMQVEEVFLLHWQKLLSLLDWRR 656
E M+ +EVF LH KL+SLL W+R
Sbjct: 792 EKMRAQEVF*LHSLKLVSLLGWKR 721
Score = 25.4 bits (49), Expect(4) = 1e-034
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 481 SESCQVIADAASEPE 525
SE CQVIADA S E
Sbjct: 492 SEFCQVIADATSVEE 536
Score = 25.4 bits (49), Expect(4) = 7e-045
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / -3
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 530 YTCCICNYLAKFRWQ 486
>gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_H10 3', mRNA sequence
Length = 790
Score = 103 bits (219), Expect(4) = 2e-042
Identities = 42/83 (50%), Positives = 60/83 (72%)
Frame = -3 / -1
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++NFG+ V L +S GL S GST TVLTS+++MDENSF+NP KVVP ++
Sbjct: 493 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 314
Query: 296 DLSNAAEQMQVTLAPRSFSSFDL 228
+ NA + M V L+P S +SFDL
Sbjct: 313 MIENADKDMDVVLSPYSLTSFDL 245
Score = 73.0 bits (153), Expect(4) = 2e-042
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3 / -1
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RWNPDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 670 RWNPDAIVFNSSTHYGTPSYWVQKFFRESSGA 575
Score = 68.9 bits (144), Expect(4) = 4e-032
Identities = 35/81 (43%), Positives = 46/81 (56%)
Frame = +1 / +3
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALILAWS 408
+SNE+KE G S T + +A ++ GTT G KEFSSI +V TV VDP L+ +
Sbjct: 246 KSNEVKEYGESTTSMSLSAFSIIVWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 425
Query: 409 PLVEIVRVTASDPKFMTFTLR 471
P +E +R T PKF F R
Sbjct: 426 PSMETLRFTLLFPKFTIFIFR 488
Score = 62.5 bits (130), Expect(4) = 4e-032
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1 / +3
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFHL 654
+APLDS K+ C Q*LGVP*C ELKTIASGFHL
Sbjct: 573 VAPLDSLKNFCTQ*LGVP*CVDELKTIASGFHL 671
Score = 36.8 bits (74), Expect(4) = 4e-032
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 640 SGFHLFFSSPVRKAASANEARRLPL 714
S LFFSSP+R ASA+ A+RLP+
Sbjct: 714 STISLFFSSPIRNPASASAAKRLPV 788
Score = 27.2 bits (53), Expect(4) = 2e-042
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1 / -2
Query: 712 EEVFLLHWQKLLSLLDWRR 656
+EVF LH KL SLL W+R
Sbjct: 786 QEVF*LH*LKLDSLLGWKR 730
Score = 25.4 bits (49), Expect(4) = 4e-032
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 481 SESCQVIADAASEPE 525
SE CQVIADA S E
Sbjct: 501 SEFCQVIADATSVEE 545
Score = 25.4 bits (49), Expect(4) = 2e-042
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / -3
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 539 YTCCICNYLAKFRWQ 495
>gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_A19 3', mRNA sequence
Length = 716
Score = 104 bits (221), Expect(3) = 5e-040
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = -3 / -1
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++NFG+ V L +S GL S GST TVLTS+++MDENSF+NP KVVP ++
Sbjct: 473 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 294
Query: 296 DLSNAAEQMQVTLAPRSFSSFDL 228
L NA + M V L+P S +SFDL
Sbjct: 293 MLENADKDMDVVLSPYSLTSFDL 225
Score = 73.5 bits (154), Expect(3) = 5e-040
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3 / -1
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RWNPDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 650 RWNPDAIVFNSSMHYGTPSYWVQKFFRESSGA 555
Score = 68.4 bits (143), Expect(3) = 3e-026
Identities = 35/81 (43%), Positives = 45/81 (55%)
Frame = +1 / +1
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALILAWS 408
+SNE+KE G S T + +A + GTT G KEFSSI +V TV VDP L+ +
Sbjct: 226 KSNEVKEYGESTTSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 405
Query: 409 PLVEIVRVTASDPKFMTFTLR 471
P +E +R T PKF F R
Sbjct: 406 PSMETLRFTLLFPKFTIFIFR 468
Score = 62.5 bits (130), Expect(3) = 3e-026
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFHL 654
+APLDS K+ C Q*LGVP*C ELKTIASGFHL
Sbjct: 553 VAPLDSLKNFCTQ*LGVP*CIDELKTIASGFHL 651
Score = 25.4 bits (49), Expect(3) = 3e-026
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / +1
Query: 481 SESCQVIADAASEPE 525
SE CQVIADA S E
Sbjct: 481 SEFCQVIADATSVEE 525
Score = 25.4 bits (49), Expect(3) = 5e-040
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / -3
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 519 YTCCICNYLAKFRWQ 475
>gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_F18 3', mRNA sequence
Length = 765
Score = 103 bits (219), Expect(3) = 1e-039
Identities = 42/83 (50%), Positives = 60/83 (72%)
Frame = -3 / -3
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++NFG+ V L +S GL S GST TVLTS+++MDENSF+NP KVVP ++
Sbjct: 493 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 314
Query: 296 DLSNAAEQMQVTLAPRSFSSFDL 228
+ NA + M V L+P S +SFDL
Sbjct: 313 MIENADKDMDVVLSPYSLTSFDL 245
Score = 73.0 bits (153), Expect(3) = 1e-039
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3 / -3
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RWNPDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 670 RWNPDAIVFNSSTHYGTPSYWVQKFFRESSGA 575
Score = 68.9 bits (144), Expect(4) = 5e-029
Identities = 35/81 (43%), Positives = 46/81 (56%)
Frame = +1 / +3
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALILAWS 408
+SNE+KE G S T + +A ++ GTT G KEFSSI +V TV VDP L+ +
Sbjct: 246 KSNEVKEYGESTTSMSLSAFSIIVWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 425
Query: 409 PLVEIVRVTASDPKFMTFTLR 471
P +E +R T PKF F R
Sbjct: 426 PSMETLRFTLLFPKFTIFIFR 488
Score = 62.5 bits (130), Expect(4) = 5e-029
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1 / +3
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFHL 654
+APLDS K+ C Q*LGVP*C ELKTIASGFHL
Sbjct: 573 VAPLDSLKNFCTQ*LGVP*CVDELKTIASGFHL 671
Score = 26.3 bits (51), Expect(4) = 5e-029
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1 / +3
Query: 640 SGFHLFFSSPVRKAASA 690
S LFFSSP+R ASA
Sbjct: 714 STISLFFSSPIRNPASA 764
Score = 25.4 bits (49), Expect(4) = 5e-029
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 481 SESCQVIADAASEPE 525
SE CQVIADA S E
Sbjct: 501 SEFCQVIADATSVEE 545
Score = 25.4 bits (49), Expect(3) = 1e-039
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / -2
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 539 YTCCICNYLAKFRWQ 495
>gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 512
Score = 81.7 bits (172), Expect(4) = 2e-037
Identities = 32/64 (50%), Positives = 47/64 (73%)
Frame = -3 / +1
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++NFG+ V L +S GL S GST TVLTS+++MDENSF+NP KVVP ++
Sbjct: 319 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 498
Query: 296 DLSN 285
+ N
Sbjct: 499 MIEN 510
Score = 73.0 bits (153), Expect(4) = 2e-037
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3 / +1
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RWNPDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 142 RWNPDAIVFNSSTHYGTPSYWVQKFFRESSGA 237
Score = 62.5 bits (130), Expect(4) = 2e-029
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1 / -1
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFHL 654
+APLDS K+ C Q*LGVP*C ELKTIASGFHL
Sbjct: 239 VAPLDSLKNFCTQ*LGVP*CVDELKTIASGFHL 141
Score = 52.8 bits (109), Expect(4) = 2e-029
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +1 / -1
Query: 298 LFTGTTLVGLLKEFSSITSADVRTVAVDPRALILAWSPLVEIVRVTASDPKFMTFTLR 471
++ GTT G KEFSSI +V TV VDP L+ +P +E +R T PKF F R
Sbjct: 497 VWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLFPKFTIFIFR 324
Score = 43.7 bits (89), Expect(4) = 2e-029
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1 / -1
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFSSP+R ASA+ A+RLP+PAS
Sbjct: 98 STISLFFSSPIRNPASASAAKRLPVPAS 15
Score = 31.3 bits (62), Expect(4) = 2e-037
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1 / +2
Query: 727 EVMQVEEVFLLHWQKLLSLLDWRR 656
E M+ +EVF LH KL SLL W+R
Sbjct: 11 EKMRAQEVF*LH*LKLDSLLGWKR 82
Score = 25.4 bits (49), Expect(4) = 2e-037
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / +3
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 273 YTCCICNYLAKFRWQ 317
Score = 25.4 bits (49), Expect(4) = 2e-029
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / -1
Query: 481 SESCQVIADAASEPE 525
SE CQVIADA S E
Sbjct: 311 SEFCQVIADATSVEE 267
>gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_A12 3', mRNA sequence
Length = 671
Score = 104 bits (221), Expect(3) = 3e-037
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = -3 / -3
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++NFG+ V L +S GL S GST TVLTS+++MDENSF+NP KVVP ++
Sbjct: 477 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 298
Query: 296 DLSNAAEQMQVTLAPRSFSSFDL 228
L NA + M V L+P S +SFDL
Sbjct: 297 MLENADKDMDVVLSPYSLTSFDL 229
Score = 68.4 bits (143), Expect(3) = 7e-024
Identities = 35/81 (43%), Positives = 45/81 (55%)
Frame = +1 / +2
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALILAWS 408
+SNE+KE G S T + +A + GTT G KEFSSI +V TV VDP L+ +
Sbjct: 230 KSNEVKEYGESTTSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 409
Query: 409 PLVEIVRVTASDPKFMTFTLR 471
P +E +R T PKF F R
Sbjct: 410 PSMETLRFTLLFPKFTIFIFR 472
Score = 63.8 bits (133), Expect(3) = 3e-037
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -3 / -3
Query: 647 NPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
+PDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 648 DPDAIVFNSSMHYGTPSYWVQKFFRESSGA 559
Score = 54.2 bits (112), Expect(3) = 7e-024
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +1 / +2
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASG 645
+APLDS K+ C Q*LGVP*C ELKTIASG
Sbjct: 557 VAPLDSLKNFCTQ*LGVP*CIDELKTIASG 646
Score = 25.4 bits (49), Expect(3) = 7e-024
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / +2
Query: 481 SESCQVIADAASEPE 525
SE CQVIADA S E
Sbjct: 485 SEFCQVIADATSVEE 529
Score = 25.4 bits (49), Expect(3) = 3e-037
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / -2
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 523 YTCCICNYLAKFRWQ 479
>gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 593
Score = 88.6 bits (187), Expect(4) = 6e-037
Identities = 37/75 (49%), Positives = 53/75 (70%)
Frame = -3 / +3
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++NFG+ V L +S GL + GST TVLTS++VMDENSF++P KVVP S
Sbjct: 369 TYLKIKIVNFGNRHVNLEVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVVPDLS 548
Query: 296 DLSNAAEQMQVTLAP 252
L NA + M + +AP
Sbjct: 549 LLENADKDMNIIIAP 593
Score = 73.5 bits (154), Expect(4) = 6e-037
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3 / +3
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RWNPDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 189 RWNPDAIVFNSSMHYGTPSYWVQKFFRESSGA 284
Score = 63.4 bits (132), Expect(4) = 2e-031
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +1 / -2
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFHL 654
+APLDS K+ C Q*LGVP*C +ELKTIASGFHL
Sbjct: 286 VAPLDSLKNFCTQ*LGVP*CIEELKTIASGFHL 188
Score = 62.5 bits (130), Expect(4) = 2e-031
Identities = 33/73 (45%), Positives = 41/73 (56%)
Frame = +1 / -2
Query: 253 GASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALILAWSPLVEIVRV 432
GA + + +A L +GTTL G +KEFSSIT +VRTV VDP L+ +P E R
Sbjct: 592 GAIIMFMSLSAFSSKLRSGTTLFGSVKEFSSITFEEVRTVFVDPDNCELSPNPSTETSRF 413
Query: 433 TASDPKFMTFTLR 471
T PKF F R
Sbjct: 412 TCLFPKFTIFIFR 374
Score = 42.8 bits (87), Expect(4) = 2e-031
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1 / -2
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFSSP+R ASA+ A+RLP+PAS
Sbjct: 145 STISLFFSSPMRNPASASAAKRLPVPAS 62
Score = 25.4 bits (49), Expect(4) = 6e-037
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1 / +1
Query: 727 EVMQVEEVFLLHWQKLLSLLDWRR 656
E M +EVF H KL S L W+R
Sbjct: 58 EKMLAQEVF*QHLLKLDSSLGWKR 129
Score = 22.6 bits (43), Expect(4) = 6e-037
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -2 / +2
Query: 519 FTCSVCDYL 493
FTC +C+YL
Sbjct: 320 FTCCICNYL 346
Score = 22.6 bits (43), Expect(4) = 2e-031
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1 / -2
Query: 481 SESCQVIADAASEPE 525
+E QVIADA SE E
Sbjct: 358 TEFVQVIADATSEEE 314
>gb|CA823251.1|CA823251 R23A11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 536
Score = 94.1 bits (199), Expect(3) = 2e-036
Identities = 40/91 (43%), Positives = 61/91 (67%)
Frame = -3 / +1
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++N G+ V+L +S GL + GST TVLTS++VMDENSF++P KVVP S
Sbjct: 247 TYLKIKIVNVGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVVPDLS 426
Query: 296 DLSNAAEQMQVTLAPRSFSSFDLALAQSKLV 204
L NA + M + +AP S +S DL + ++
Sbjct: 427 LLENADKDMNIIIAPYSMTSLDLLTESNNIM 519
Score = 73.5 bits (154), Expect(3) = 2e-036
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3 / +1
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RWNPDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 67 RWNPDAIVFNSSMHYGTPSYWVQKFFRESSGA 162
Score = 64.8 bits (135), Expect(3) = 6e-025
Identities = 34/81 (41%), Positives = 47/81 (58%)
Frame = +1 / -1
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALILAWS 408
+S+E+ E GA + + +A L +GTTL G +KEFSSIT +V TV VDP L+ +
Sbjct: 494 KSSEVIEYGAIIMFMSLSAFSSRLRSGTTLFGSVKEFSSITFEEVSTVFVDPDNCELSPN 315
Query: 409 PLVEIVRVTASDPKFMTFTLR 471
P E +R+T P F F R
Sbjct: 314 PSTETLRLTCLFPTFTIFIFR 252
Score = 64.3 bits (134), Expect(3) = 6e-025
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +1 / -1
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFHLFFSSPVRKAA 684
+APLDS K+ C Q*LGVP*C +ELKTIASGFHL S + A
Sbjct: 164 VAPLDSLKNFCTQ*LGVP*CIEELKTIASGFHLLSLSFTKSGA 36
Score = 23.1 bits (44), Expect(3) = 2e-036
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2 / +3
Query: 519 FTCSVCDYL 493
FTC VC+YL
Sbjct: 198 FTCCVCNYL 224
Score = 22.6 bits (43), Expect(3) = 6e-025
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1 / -1
Query: 481 SESCQVIADAASEPE 525
+E QVIADA SE E
Sbjct: 236 TEFVQVIADATSEEE 192
>gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 630
Score = 100 bits (214), Expect(2) = 4e-025
Identities = 53/116 (45%), Positives = 64/116 (55%)
Frame = +1 / -3
Query: 307 GTTLVGLLKEFSSITSADVRTVAVDPRALILAWSPLVEIVRVTASDPKFMTFTLRKLFSE 486
GTT G KEFSSI +V TV VDP L+ +P +E +R T PKF F R +
Sbjct: 457 GTTFFGFGKEFSSIKLEEVSTVFVDPDNCELSPNPTMETLRFTLLFPKFTIFIFR*VLPS 278
Query: 487 SCQVIADAASEPE*LELIVVGWNIAPLDSRKSVCIQ*LGVP*CCQELKTIASGFHL 654
+ A+ E + +APLDS K+ C Q*LGVP*C ELKTIASG HL
Sbjct: 277 ELCQVIADATSVEEFVCSLASRRVAPLDSLKNFCTQ*LGVP*CIDELKTIASGLHL 110
Score = 76.7 bits (161), Expect(4) = 5e-034
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = -3 / +3
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVP 306
++L++K++NFG+ V L +S GL S GST TVLTS+++MDENSF NP KVVP
Sbjct: 288 TYLKIKIVNFGNSKVNLKVSIVGLGLSSQLSGSTKTVLTSSNLMDENSFPNPKKVVP 458
Score = 71.2 bits (149), Expect(4) = 5e-034
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -3 / +3
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RW+PDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 111 RWSPDAIVFNSSMHYGTPSYWVQKFFRESSGA 206
Score = 33.6 bits (67), Expect(2) = 4e-025
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1 / -3
Query: 640 SGFHLFFSSPVRKAASANEARR 705
S LFFSSP+RK ASA+ A+R
Sbjct: 67 STISLFFSSPIRKPASASAAKR 2
Score = 26.7 bits (52), Expect(4) = 5e-034
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / +1
Query: 706 VFLLHWQKLLSLLDWRR 656
VF LH KL+SLL W+R
Sbjct: 1 VF*LHSLKLVSLLGWKR 51
Score = 25.4 bits (49), Expect(4) = 5e-034
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / +2
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 242 YTCCICNYLAKFRWQ 286
>gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_D15 5', mRNA sequence
Length = 754
Score = 73.5 bits (154), Expect(4) = 1e-033
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3 / +2
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RWNPDAIVFNS HYGTPSYW+Q FRESSGA
Sbjct: 380 RWNPDAIVFNSSMHYGTPSYWVQKFFRESSGA 475
Score = 65.7 bits (137), Expect(4) = 1e-033
Identities = 26/55 (47%), Positives = 38/55 (69%)
Frame = -3 / +2
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKV 312
++L++K++NFG+ V L +S GL S GST TVLTS+++MD F+NP KV
Sbjct: 557 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDXXXFANPKKV 721
Score = 62.5 bits (130), Expect(4) = 1e-026
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1 / -2
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFHL 654
+APLDS K+ C Q*LGVP*C ELKTIASGFHL
Sbjct: 477 VAPLDSLKNFCTQ*LGVP*CIDELKTIASGFHL 379
Score = 46.0 bits (94), Expect(4) = 1e-026
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1 / -2
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFSSP+RK ASA+ A+RLP+PAS
Sbjct: 336 STISLFFSSPIRKPASASAAKRLPVPAS 253
Score = 40.9 bits (83), Expect(4) = 1e-026
Identities = 22/53 (41%), Positives = 27/53 (50%)
Frame = +1 / -2
Query: 313 TLVGLLKEFSSITSADVRTVAVDPRALILAWSPLVEIVRVTASDPKFMTFTLR 471
T G K SSI +V TV VDP L+ +P +E +R T PKF F R
Sbjct: 720 TFFGFAKXXSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLFPKFTIFIFR 562
Score = 34.1 bits (68), Expect(4) = 1e-033
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1 / +3
Query: 727 EVMQVEEVFLLHWQKLLSLLDWRR 656
E M+ +EVF LH KL+SLL W+R
Sbjct: 249 EKMRAQEVF*LHSLKLVSLLGWKR 320
Score = 25.4 bits (49), Expect(4) = 1e-033
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / +1
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 511 YTCCICNYLAKFRWQ 555
Score = 25.4 bits (49), Expect(4) = 1e-026
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / -2
Query: 481 SESCQVIADAASEPE 525
SE CQVIADA S E
Sbjct: 549 SEFCQVIADATSVEE 505
>gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 380
Score = 79.4 bits (167), Expect(3) = 2e-026
Identities = 31/60 (51%), Positives = 45/60 (75%)
Frame = -3 / +3
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++NFG+ V L +S GL S GST TVLTS+++MDENSF+NP KVVP ++
Sbjct: 198 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 377
Score = 51.9 bits (107), Expect(3) = 2e-026
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -3 / +3
Query: 629 FNSWQHYGTPSYWMQTLFRESSGA 558
FNS HYGTPSYW+Q FRESSGA
Sbjct: 45 FNSSMHYGTPSYWVQKFFRESSGA 116
Score = 25.4 bits (49), Expect(3) = 2e-026
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / +2
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 152 YTCCICNYLAKFRWQ 196
>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
Length = 96930
Score = 70.3 bits (147), Expect(3) = 1e-023
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -3 / -3
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGA 558
RWNPDAIVFNS HYGTPSYW+ FRESSGA
Sbjct: 66910 RWNPDAIVFNSSMHYGTPSYWVLKFFRESSGA 66815
Score = 63.4 bits (132), Expect(3) = 1e-023
Identities = 26/50 (52%), Positives = 37/50 (74%)
Frame = -3 / -3
Query: 461 KVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKV 312
+++NFG+ V+L +S GL + GST TVLTS++VMDENSF++P KV
Sbjct: 66526 QIVNFGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKV 66377
Score = 30.9 bits (61), Expect(3) = 1e-023
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3 / -1
Query: 317 KVVPVKSDLSNAAEQMQVTLAPRSFSSFDL 228
+VVP S L NA + M + +AP S +S DL
Sbjct: 66225 QVVPDLSLLENADKDMNIIIAPYSLTSLDL 66136
>gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_D20 3', mRNA sequence
Length = 587
Score = 104 bits (221), Expect(2) = 1e-023
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = -3 / -1
Query: 476 SFLRVKVINFGSDAVTLTISTSGLQASINALGSTATVLTSADVMDENSFSNPTKVVPVKS 297
++L++K++NFG+ V L +S GL S GST TVLTS+++MDENSF+NP KVVP ++
Sbjct: 476 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 297
Query: 296 DLSNAAEQMQVTLAPRSFSSFDL 228
L NA + M V L+P S +SFDL
Sbjct: 296 MLENADKDMDVVLSPYSLTSFDL 228
Score = 25.4 bits (49), Expect(2) = 1e-023
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / -3
Query: 519 FTCSVCDYLAGLREQ 475
+TC +C+YLA R Q
Sbjct: 522 YTCCICNYLAKFRWQ 478
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 377,596,695
Number of Sequences: 369679
Number of extensions: 5585873
Number of successful extensions: 44142
Number of sequences better than 1.0e-020: 15
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9375858940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)